TPM3

General Information

Gene Name : TPM3
Gene ID : ENSG00000143549.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TPM3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TPM3	ENSG00000143549.19	383.15	406.56	394.86	ENCSR000AEF
HepG2	TPM3	ENSG00000143549.19	257.55	267.37	262.46	ENCSR985KAT
K562	TPM3	ENSG00000143549.19	352.87	366.47	359.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TPM3 is not avaliable on ENCORE database.

Proteins bound to RNA

TPM3 RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for TPM3 is not avaliable on ENCORE database.

36 proteins are bound to TPM3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	154155466	154155497	-	CDS,intron-Distal	4.93471	77.18877	K562	UCHL5
chr1	154129076	154129136	-	3'-UTR,intron-Distal,intron-Proximal	3.78887	64.01932	K562	FAM120A
chr1	154129356	154129451	-	3'-UTR,intron-Distal	3.53043	61.90872	K562	FAM120A
chr1	154155462	154155466	-	CDS,intron-Distal	4.82466	59.16151	K562	UCHL5
chr1	154148691	154148725	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.74379	59.12489	K562	UCHL5
chr1	154155465	154155496	-	CDS,intron-Distal	4.76612	57.21009	K562	ZNF622
chr1	154145382	154145438	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.12136	50.14602	K562	UCHL5
chr1	154129645	154129699	-	3'-UTR,intron-Distal,intron-Proximal	3.44755	46.25679	K562	FAM120A
chr1	154148689	154148725	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.37006	44.89255	K562	ZNF622
chr1	154155463	154155465	-	CDS,intron-Distal	4.50622	42.66444	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 176 entries

eCLIP assay for TPM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TPM3 is not available on ENCORE database.
105 RBPs can affect the levels of TPM3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TPM3 is not available on ENCORE database.

105 RBPs can affect the gene expression of TPM3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TPM3	ENSG00000143549.15	9508.66400	12481.48140	-0.39250	20.45840	18.70170	K562	NSUN2
TPM3	ENSG00000143549.15	6644.61080	4591.63170	0.53310	19.38480	18.09370	HepG2	ACO1
TPM3	ENSG00000143549.15	4840.72630	7268.20090	-0.58640	19.04570	17.70650	HepG2	ETF1
TPM3	ENSG00000143549.15	2851.55690	4586.87510	-0.68580	18.97950	17.69870	HepG2	TAF15
TPM3	ENSG00000143549.15	9095.62940	5998.43600	0.60050	18.86340	17.48700	HepG2	CELF1
TPM3	ENSG00000143549.15	7873.37890	5796.12960	0.44180	17.96820	16.87630	HepG2	ZNF622
TPM3	ENSG00000143549.15	3125.84140	4393.15220	-0.49100	15.47090	14.13210	HepG2	SAFB2
TPM3	ENSG00000143549.15	3341.70440	4676.88070	-0.48500	14.70640	13.48360	HepG2	PUS1
TPM3	ENSG00000143549.15	2615.48220	4578.56660	-0.80780	14.89390	13.39890	HepG2	HNRNPK
TPM3	ENSG00000143549.15	2210.70370	4702.72690	-1.08900	14.46440	12.96120	HepG2	EIF4B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 131 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TPM3 is not available on ENCORE database.

6 RBPs can affect the splicing of TPM3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154129169	154130197	154142875	154142945	0.11500	included	HepG2	U2AF1
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154129169	154130197	154142875	154142945	0.14400	included	HepG2	U2AF2
SE	TPM3	ENSG00000143549.15	chr1	-	154148590	154148724	154145559	154145677	154155463	154155648	-0.10900	excluded	K562	AQR
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154130007	154130229	154142875	154142941	-0.82700	excluded	K562	AQR
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154129169	154130197	154142875	154142945	0.14100	included	K562	U2AF1
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154129169	154130197	154142875	154142945	0.26000	included	K562	U2AF2
SE	TPM3	ENSG00000143549.15	chr1	-	154141780	154141859	154129169	154130197	154142875	154142945	0.09300	included	K562	PTBP1
SE	TPM3	ENSG00000143549.15	chr1	-	154148590	154148724	154145559	154145677	154155463	154155650	-0.18500	excluded	K562	HNRNPC
A3SS	TPM3	ENSG00000143549.15	chr1	-	154145559	154145752	154145559	154145677	154148590	154148783	0.12700	longer	K562	AQR
A3SS	TPM3	ENSG00000143549.15	chr1	-	154144504	154144731	154144504	154144580	154145383	154145478	0.08100	longer	K562	AQR

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TPM3

General Information

Functions

Localization

Domains (AlphaFold: TPM3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TPM3 is not avaliable on ENCORE database.

36 proteins are bound to TPM3 RNA:

eCLIP assay for TPM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TPM3 is not available on ENCORE database.

105 RBPs can affect the gene expression of TPM3 :

The Knockdown/knockout RNA-Seq assay for TPM3 is not available on ENCORE database.

6 RBPs can affect the splicing of TPM3 :

The Knockdown/knockout RNA-Seq assay for TPM3 is not avaliable on ENCORE database.