TNFRSF19

General Information

Gene Name       : TNFRSF19
Gene ID             : ENSG00000127863.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TNFRSF19)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TNFRSF19ENSG00000127863.1532.9129.4731.19ENCSR000AEF
HepG2TNFRSF19ENSG00000127863.1564.5084.5074.50ENCSR985KAT
K562TNFRSF19ENSG00000127863.150.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TNFRSF19 RNA is bound by 27 proteins.  







eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.





27 proteins are bound to TNFRSF19 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr132424950324249588+3'-UTR4.3680614.26861HepG2LIN28B
chr132424884924248915+3'-UTR3.107124.88659HepG2LIN28B
chr132424999724250084+3'-UTR3.606035.20766HepG2DDX55
chr132424321024243278+3'-UTR,CDS,intron-Proximal3.3419416.75721HepG2PRPF8
chr132424814424248255+3'-UTR3.436945.32467HepG2IGF2BP3
chr132424854124248622+3'-UTR3.878724.69646HepG2UPF1
chr132424869524248749+3'-UTR4.337644.44583HepG2UPF1
chr132425000624250094+3'-UTR3.846043.82357HepG2TIAL1
chr132420085124200866+3'-UTR,CDS3.421483.03966HepG2SND1
chr132424842324248541+3'-UTR3.8899710.75004HepG2UPF1
chr132424830924248390+3'-UTR3.202715.52636HepG2UPF1
chr132420087324200946+3'-UTR,CDS,intron-Proximal3.235824.91547HepG2GRWD1
chr132424997924250081+3'-UTR3.115925.74775HepG2FUBP3
chr132424942524249480+3'-UTR3.353644.08943HepG2LIN28B
chr132425000824250116+3'-UTR3.354697.47848HepG2ZC3H11A
chr132424805224248168+3'-UTR5.5230110.25977HepG2UPF1
chr132425001324250086+3'-UTR4.260973.43811HepG2TIA1
chr132420087024200918+3'-UTR,CDS4.8581520.12489HepG2SND1
chr132415346024153553+5'-UTR,intron-Distal3.5556014.40564HepG2CSTF2T
chr132419000524190087+5'-UTR,CDS,intron-Proximal3.329188.60746HepG2PPIG
chr132419008824190137+5'-UTR,CDS4.4487915.20357HepG2SND1
chr132415344124153523+5'-UTR,intron-Distal3.652185.28409HepG2GTF2F1
chr132415359324153670+5'-UTR,intron-Distal,intron-Proximal3.8761417.35766HepG2DDX3X
chr132414490424145010+5'-UTR,intron-Proximal4.440586.88275HepG2NCBP2
chr132419014224190184+5'-UTR,CDS4.9331513.71577HepG2SND1
chr132415345824153547+5'-UTR,intron-Distal3.856933.39593HepG2PRPF4
chr132415340924153521+5'-UTR,intron-Distal3.453047.01627HepG2XRN2
chr132419000524190145+5'-UTR,CDS,intron-Proximal4.0527117.64180HepG2RPS3
chr132415347224153531+5'-UTR,intron-Distal3.664183.54519HepG2FKBP4
chr132419002324190088+5'-UTR,CDS3.6805012.56859HepG2SND1
chr132424305624243085+CDS3.757904.95361HepG2SND1
chr132423460724234629+CDS5.0727624.01824HepG2SND1
chr132423450324234524+CDS,intron-Proximal5.012697.93299HepG2SND1
chr132424290124242946+CDS3.943229.49432HepG2SND1
chr132423449324234552+CDS,intron-Proximal3.996717.73763HepG2BUD13
chr132423313824233223+CDS,intron-Proximal3.220865.68089HepG2BUD13
chr132424220324242221+CDS3.181903.65584HepG2SND1
chr132424286424242901+CDS4.0305810.36200HepG2SND1
chr132420091824200932+CDS,intron-Proximal4.3561315.99615HepG2SND1
chr132423452424234569+CDS3.513908.86547HepG2SND1
chr132424211724242144+CDS,intron-Proximal5.3193320.34840HepG2SND1
chr132423456924234607+CDS3.6920914.19713HepG2SND1
chr132424283024242864+CDS,intron-Proximal5.402417.63354HepG2SND1
chr132423320624233262+CDS3.6091018.20409HepG2SND1
chr132423333824233353+CDS4.878407.03502HepG2SND1
chr132424214424242203+CDS4.6789817.65045HepG2SND1
chr132423318824233206+CDS,intron-Proximal4.3632616.34553HepG2SND1
chr132423332324233357+CDS,intron-Proximal3.070784.39623HepG2PPIG
chr132423326224233311+CDS3.7605213.32696HepG2SND1
chr132423318724233234+CDS,intron-Proximal3.682899.59666HepG2RPS3
chr132414838124148405+intron-Distal5.374407.62903HepG2QKI
chr132414835924148381+intron-Distal3.633846.82051HepG2QKI
chr132422316324223230+intron-Distal4.553546.05753HepG2SUGP2
chr132421136124211412+intron-Distal4.376193.83958HepG2QKI
chr132415372224153854+intron-Distal,intron-Proximal3.994743.05512HepG2PRPF4
chr132415205524152143+intron-Distal3.958606.55430HepG2RBFOX2
chr132415289024152932+intron-Distal3.038163.77562HepG2CSTF2T
chr132415326324153311+intron-Distal4.370354.10387HepG2SFPQ
chr132415372824153773+intron-Distal,intron-Proximal3.995706.58651HepG2CSTF2T
chr132415385324153949+intron-Distal3.299478.67409HepG2CSTF2T
chr132415206024152130+intron-Distal3.301963.15890HepG2GTF2F1
chr132415299024153080+intron-Distal5.1195215.32974HepG2CSTF2T
chr132424224324242337+intron-Distal,intron-Proximal4.869905.20135HepG2QKI
chr132421650524216605+intron-Distal4.2666511.61291HepG2QKI
chr132415377324153853+intron-Distal3.448279.14569HepG2CSTF2T
chr132415375924153808+intron-Distal,intron-Proximal4.138174.13073HepG2GTF2F1
chr132415204924152147+intron-Distal3.403483.72699HepG2PRPF4
chr132414758424147648+intron-Distal3.973573.27582HepG2SFPQ
chr132415384524153944+intron-Distal3.125087.44180HepG2FAM120A
chr132415374824153850+intron-Distal,intron-Proximal3.133775.87309HepG2XRN2
chr132422406424224181+intron-Distal4.327755.11328HepG2SUGP2
chr132414840524148457+intron-Distal5.116734.51735HepG2QKI
chr132415445224154572+intron-Distal4.305005.19843HepG2CSTF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TNFRSF19 is not available on ENCORE database.

  • 123 RBPs can affect the levels of TNFRSF19.  








The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.





123 RBPs can affect the gene expression of TNFRSF19 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TNFRSF19ENSG00000127863.113249.398302669.709700.283402.364601.36990HepG2AATF
TNFRSF19ENSG00000127863.113350.095602425.574000.4658012.1656011.08310HepG2ACO1
TNFRSF19ENSG00000127863.113163.638902437.053700.376307.013805.85310HepG2AKAP8L
TNFRSF19ENSG00000127863.111350.421901884.17240-0.480505.471503.57140HepG2ATP5C1
TNFRSF19ENSG00000127863.112425.991604333.98070-0.8371033.4903031.57320HepG2AUH
TNFRSF19ENSG00000127863.111682.024702740.84650-0.704408.063806.63100HepG2BCLAF1
TNFRSF19ENSG00000127863.11224.136201689.94070-2.91450107.42380105.00570HepG2BOP1
TNFRSF19ENSG00000127863.111130.452102679.28860-1.2450039.9959037.80660HepG2CALR
TNFRSF19ENSG00000127863.116874.350303994.351400.783208.894007.15260HepG2CCAR1
TNFRSF19ENSG00000127863.113025.627601438.008601.0731020.8132018.93060HepG2CIRBP
TNFRSF19ENSG00000127863.113857.116502425.147500.6694027.9042026.28680HepG2CKAP4
TNFRSF19ENSG00000127863.111080.529901992.68920-0.883004.688303.68800HepG2CNOT7
TNFRSF19ENSG00000127863.11697.974401551.46570-1.1524020.6539018.99440HepG2CPSF6
TNFRSF19ENSG00000127863.112448.363301719.551800.509706.638004.98830HepG2CPSF7
TNFRSF19ENSG00000127863.112428.485703195.05860-0.395806.666005.09620HepG2YBX3
TNFRSF19ENSG00000127863.113429.448801948.479900.8155014.9707012.81420HepG2CSTF2
TNFRSF19ENSG00000127863.115948.388604397.863000.435609.601608.54070HepG2CELF1
TNFRSF19ENSG00000127863.111191.662604728.91310-1.98850210.29150206.38310HepG2DAZAP1
TNFRSF19ENSG00000127863.112413.122203199.54300-0.407006.604304.91160HepG2DDX1
TNFRSF19ENSG00000127863.114368.872202947.253800.567808.442907.32840HepG2DDX21
TNFRSF19ENSG00000127863.111776.805902349.50410-0.403103.093301.61470HepG2DDX28
TNFRSF19ENSG00000127863.111207.681901752.33450-0.537004.931604.11570HepG2DDX3X
TNFRSF19ENSG00000127863.11959.512901533.25750-0.676206.911104.94900HepG2DDX47
TNFRSF19ENSG00000127863.11708.800601870.15970-1.3997031.9835029.32930HepG2DDX5
TNFRSF19ENSG00000127863.112678.046001505.242300.8311010.266709.15830HepG2DDX6
TNFRSF19ENSG00000127863.111297.057003025.95480-1.2221032.4805029.89340HepG2DHX30
TNFRSF19ENSG00000127863.112013.477202320.64300-0.204802.229901.61070HepG2DKC1
TNFRSF19ENSG00000127863.111004.296003137.34560-1.6434085.3948082.50910HepG2DNAJC21
TNFRSF19ENSG00000127863.112636.906403109.58740-0.237904.113303.34930HepG2DNAJC2
TNFRSF19ENSG00000127863.113111.868602415.177500.365603.210202.22310HepG2EEF2
TNFRSF19ENSG00000127863.11785.289201447.07490-0.8818011.2547010.10670HepG2EIF2S1
TNFRSF19ENSG00000127863.112411.054901960.570900.298302.104401.30790HepG2EIF3D
TNFRSF19ENSG00000127863.113590.447102782.235100.367804.416303.08420HepG2EIF3G
TNFRSF19ENSG00000127863.113333.936901557.011601.0983014.1253012.63960HepG2EIF4B
TNFRSF19ENSG00000127863.111886.844504665.25050-1.3060062.5054059.62620HepG2EIF4G1
TNFRSF19ENSG00000127863.111948.812304469.03160-1.1974030.7600028.38220HepG2EIF4G2
TNFRSF19ENSG00000127863.113894.827104976.09700-0.353507.403806.49980HepG2ETF1
TNFRSF19ENSG00000127863.111772.456802807.86440-0.663708.263406.48740HepG2FASTKD2
TNFRSF19ENSG00000127863.11494.356301554.10810-1.6525012.4000010.31050HepG2FTO
TNFRSF19ENSG00000127863.116962.766703417.394301.0267012.6217010.47180HepG2FUS
TNFRSF19ENSG00000127863.114242.878501613.465801.3948033.9796031.89380HepG2FXR1
TNFRSF19ENSG00000127863.112401.436401588.957400.595706.811105.40170HepG2G3BP2
TNFRSF19ENSG00000127863.112232.362101745.630800.354702.619801.75050HepG2GEMIN5
TNFRSF19ENSG00000127863.114420.701603047.276400.536706.181504.63680HepG2GNB2L1
TNFRSF19ENSG00000127863.111389.903201758.72940-0.339502.174501.60350HepG2GPKOW
TNFRSF19ENSG00000127863.113131.936501844.423800.763806.765405.03090HepG2GRSF1
TNFRSF19ENSG00000127863.111171.021701683.81390-0.524003.465601.92120HepG2HNRNPA0
TNFRSF19ENSG00000127863.115361.432804345.943600.302805.338504.11490HepG2HNRNPA2B1
TNFRSF19ENSG00000127863.112523.838103523.13060-0.481206.213605.20680HepG2HNRNPC
TNFRSF19ENSG00000127863.111306.839002696.23470-1.0449041.7625039.59180HepG2HNRNPF
TNFRSF19ENSG00000127863.114078.551101515.521001.4281041.2138038.84120HepG2HNRNPK
TNFRSF19ENSG00000127863.11907.545301678.38590-0.8870012.7624011.54140HepG2HNRNPLL
TNFRSF19ENSG00000127863.112657.022601454.754400.8689018.5057016.42050HepG2HNRNPM
TNFRSF19ENSG00000127863.112051.789503499.83910-0.7704028.0647026.29980HepG2HNRNPU
TNFRSF19ENSG00000127863.111047.422902655.01640-1.3419045.9248043.58220HepG2IGF2BP1
TNFRSF19ENSG00000127863.111090.689801521.44100-0.480204.068103.26440HepG2IGF2BP2
TNFRSF19ENSG00000127863.111841.209603574.97290-0.9573056.8835054.25960HepG2ILF2
TNFRSF19ENSG00000127863.11943.908101942.43640-1.041109.355706.86880HepG2ILF3
TNFRSF19ENSG00000127863.111229.794301897.53840-0.625704.885203.24210HepG2KHDRBS1
TNFRSF19ENSG00000127863.112487.242001530.284600.700602.567101.60700HepG2KHSRP
TNFRSF19ENSG00000127863.112542.925902217.341400.197602.750801.73420HepG2KIF1C
TNFRSF19ENSG00000127863.11695.531201155.67560-0.732504.595802.98110HepG2KRR1
TNFRSF19ENSG00000127863.112095.342402995.05290-0.515404.918302.70860HepG2LSM11
TNFRSF19ENSG00000127863.113473.851902528.058000.458404.715802.65200HepG2MARK2
TNFRSF19ENSG00000127863.114150.846901623.073901.3546027.6628025.84800HepG2MATR3
TNFRSF19ENSG00000127863.113238.839701706.395200.9244021.1144019.16740HepG2MSI2
TNFRSF19ENSG00000127863.111921.668201432.924200.423304.466702.92650HepG2NAA15
TNFRSF19ENSG00000127863.112819.398401661.315900.763009.919708.76400HepG2NCBP2
TNFRSF19ENSG00000127863.11592.852901096.04670-0.886607.846405.50240HepG2NKRF
TNFRSF19ENSG00000127863.11822.224201488.19400-0.8560012.0636010.60520HepG2NSUN2
TNFRSF19ENSG00000127863.111162.717201820.93830-0.647203.826502.76930HepG2PABPC1
TNFRSF19ENSG00000127863.112418.287701555.482800.6365016.8245015.53160HepG2PCBP1
TNFRSF19ENSG00000127863.111721.255302015.06090-0.227402.556001.81010HepG2PRPF4
TNFRSF19ENSG00000127863.113055.509101582.813800.9488037.0850035.55040HepG2PTBP1
TNFRSF19ENSG00000127863.111981.869604476.19010-1.1754035.4999033.66010HepG2PUF60
TNFRSF19ENSG00000127863.113968.599204751.63070-0.259806.028405.22210HepG2PUM1
TNFRSF19ENSG00000127863.112771.153704748.18650-0.7769020.6502018.92290HepG2PUM2
TNFRSF19ENSG00000127863.112869.818402470.619100.216002.974202.34150HepG2PUS1
TNFRSF19ENSG00000127863.111191.460401714.11570-0.524707.693706.73170HepG2QKI
TNFRSF19ENSG00000127863.112538.635304159.07390-0.7122010.464509.60050HepG2RBM22
TNFRSF19ENSG00000127863.112142.664701555.712000.461705.815104.86970HepG2RBM25
TNFRSF19ENSG00000127863.114845.904802923.202800.7291010.434908.42670HepG2RCC2
TNFRSF19ENSG00000127863.115411.956101761.476601.61930117.18330115.04850HepG2NELFE
TNFRSF19ENSG00000127863.113734.234201640.654401.1864061.2555059.17880HepG2RECQL
TNFRSF19ENSG00000127863.11825.950402904.58090-1.8142063.1292060.93170HepG2RPLP0
TNFRSF19ENSG00000127863.111411.848903066.63750-1.1191012.6679010.80880HepG2RPS10
TNFRSF19ENSG00000127863.111052.018901999.79700-0.926709.383807.94160HepG2RPS3A
TNFRSF19ENSG00000127863.114620.889003388.975900.447204.962903.50690HepG2RPS5
TNFRSF19ENSG00000127863.111496.473602366.83190-0.661406.718205.55280HepG2RRP9
TNFRSF19ENSG00000127863.111225.443803116.77210-1.3467082.3191079.76220HepG2SAFB2
TNFRSF19ENSG00000127863.111358.131601883.18940-0.471603.324201.89660HepG2SART3
TNFRSF19ENSG00000127863.111537.391301914.68330-0.316602.295301.43570HepG2SERBP1
TNFRSF19ENSG00000127863.112734.100601435.636400.9293010.549109.16850HepG2SF3A3
TNFRSF19ENSG00000127863.11941.844101661.28330-0.8187012.4824011.08780HepG2SF3B1
TNFRSF19ENSG00000127863.112550.660001647.820300.6302016.5234015.26320HepG2SF3B4
TNFRSF19ENSG00000127863.112901.521404291.88080-0.5648021.4914019.89830HepG2SLBP
TNFRSF19ENSG00000127863.112438.649103182.92530-0.384302.285501.42470HepG2SMNDC1
TNFRSF19ENSG00000127863.112533.559101848.464400.454702.620301.86130HepG2SNRNP70
TNFRSF19ENSG00000127863.112467.038404697.48140-0.9291049.6175048.18690HepG2SRFBP1
TNFRSF19ENSG00000127863.115546.111301720.005701.68900142.84010140.78590HepG2SRSF1
TNFRSF19ENSG00000127863.113367.445104419.53450-0.392208.777707.74510HepG2SRSF5
TNFRSF19ENSG00000127863.111244.032602648.97890-1.0904045.6237043.52790HepG2SRSF7
TNFRSF19ENSG00000127863.112189.436601399.349000.6457017.7423016.56600HepG2SRSF9
TNFRSF19ENSG00000127863.113681.412204078.45710-0.147801.742301.31220HepG2SSB
TNFRSF19ENSG00000127863.111975.434401152.112100.777809.174607.03790HepG2SSRP1
TNFRSF19ENSG00000127863.11700.866601408.24450-1.0067011.369509.08380HepG2STAU1
TNFRSF19ENSG00000127863.112444.357601739.204600.490903.546402.28780HepG2STIP1
TNFRSF19ENSG00000127863.11748.445001166.75400-0.640504.718602.97760HepG2SUGP2
TNFRSF19ENSG00000127863.11538.938401423.68210-1.4014034.6472031.88820HepG2SUPT6H
TNFRSF19ENSG00000127863.111419.503903087.23780-1.1209019.0129017.51390HepG2SUPV3L1
TNFRSF19ENSG00000127863.112824.534601546.113700.8693025.9267024.44130HepG2TAF15
TNFRSF19ENSG00000127863.111192.854401635.84770-0.455604.272103.39750HepG2TARDBP
TNFRSF19ENSG00000127863.111716.131901420.555900.272602.452901.66310HepG2TIA1
TNFRSF19ENSG00000127863.111607.321103400.81530-1.0812035.5380034.11590HepG2TIAL1
TNFRSF19ENSG00000127863.111193.736501803.71090-0.595506.741805.77300HepG2U2AF1
TNFRSF19ENSG00000127863.113216.012304628.68290-0.525305.700204.47120HepG2UBE2L3
TNFRSF19ENSG00000127863.111424.812601823.79410-0.356202.490701.77040HepG2UCHL5
TNFRSF19ENSG00000127863.111778.679902827.22570-0.668605.273703.86480HepG2UPF2
TNFRSF19ENSG00000127863.113114.247701229.215101.3410073.6959071.31000HepG2UTP3
TNFRSF19ENSG00000127863.11702.807101791.15830-1.3497016.1242013.59150HepG2XPO5
TNFRSF19ENSG00000127863.112450.877603039.04410-0.310302.048601.41730HepG2XRN2
TNFRSF19ENSG00000127863.11820.523001988.66390-1.2772060.6391058.39120HepG2ZC3H8
TNFRSF19ENSG00000127863.111051.023301400.26540-0.413907.264306.48700HepG2ZNF622
TNFRSF19ENSG00000127863.1116.378900.490205.062203.618802.53470K562KRR1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.





5 RBPs can affect the splicing of TNFRSF19 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETNFRSF19ENSG00000127863.11chr13+242428302424323624242118242422212424751024250232-0.268000.000060.00175excludedHepG2U2AF1
SETNFRSF19ENSG00000127863.11chr13+242345032423462924233188242333532424211824242221-0.170000.000690.01491excludedHepG2U2AF1
SETNFRSF19ENSG00000127863.11chr13+2415959424159684241534972415366824164288241643910.438000.000820.02290includedHepG2HNRNPK
SETNFRSF19ENSG00000127863.11chr13+241674832416759424144508241449872419000524190184-0.210000.005320.05571excludedHepG2U2AF2
SETNFRSF19ENSG00000127863.11chr13+2415959424159684241534972415366824164288241643910.507000.000530.04116includedHepG2HNRNPL
SETNFRSF19ENSG00000127863.11chr13+2415959424159684241534972415366824164288241643910.392000.000300.06553includedHepG2FUS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not avaliable on ENCORE database.