TGFBR1

General Information

Gene Name       : TGFBR1
Gene ID             : ENSG00000106799.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TGFBR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TGFBR1ENSG00000106799.1211.069.2810.17ENCSR000AEF
HepG2TGFBR1ENSG00000106799.1211.1611.5011.33ENCSR985KAT
K562TGFBR1ENSG00000106799.1216.5814.1315.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TGFBR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TGFBR1 RNA is bound by 30 proteins.  







eCLIP assay for TGFBR1 is not avaliable on ENCORE database.





30 proteins are bound to TGFBR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9101915456101915496+3'-UTR4.330608.61496K562PUM2
chr9101912005101912067+3'-UTR3.284463.07411K562LIN28B
chr9101911618101911670+3'-UTR3.343594.02462K562TIA1
chr9101914244101914300+3'-UTR3.234987.26174K562FAM120A
chr9101914524101914692+3'-UTR3.380463.91115K562LIN28B
chr9101915807101915887+3'-UTR4.3604635.15612K562PUM2
chr9101915840101915893+3'-UTR4.641694.90799K562UPF1
chr9101914692101914760+3'-UTR3.796483.25521K562LIN28B
chr9101914579101914631+3'-UTR5.511689.60749K562UPF1
chr9101913199101913270+3'-UTR3.768588.70833K562YBX3
chr9101915500101915542+3'-UTR3.9012711.87563K562PUM2
chr9101891163101891259+3'-UTR,5'-UTR,CDS4.0759111.58765K562DDX3X
chr9101867428101867496+5'-UTR,CDS,intron-Distal3.772427.47133K562NCBP2
chr9101867480101867585+5'-UTR,CDS,intron-Distal,intron-Proximal3.053729.11994K562DDX3X
chr9101867416101867483+5'-UTR,intron-Distal3.997487.54819K562HNRNPM
chr9101867418101867521+5'-UTR,CDS,intron-Distal5.6525339.71944HepG2DDX3X
chr9101867404101867527+5'-UTR,CDS,intron-Distal3.566294.20395K562GTF2F1
chr9101867482101867535+5'-UTR,CDS,intron-Distal4.381486.81263K562DROSHA
chr9101867412101867562+5'-UTR,CDS,intron-Distal3.219975.13820HepG2NCBP2
chr9101867423101867480+5'-UTR,intron-Distal4.674609.24431K562DDX3X
chr9101867425101867479+5'-UTR,intron-Distal3.359073.77433K562XRN2
chr9101867429101867517+5'-UTR,CDS,intron-Distal3.191313.57774K562EWSR1
chr9101900202101900287+CDS3.624264.49347K562UCHL5
chr9101894786101894794+CDS,intron-Distal,intron-Proximal3.281583.29348K562YBX3
chr9101894826101894874+CDS,intron-Distal3.531839.30098K562YBX3
chr9101894806101894826+CDS,intron-Distal3.519518.31323K562YBX3
chr9101891346101891382+CDS3.360973.08662K562YBX3
chr9101867577101867661+CDS,intron-Distal,intron-Proximal3.756807.17506K562DDX51
chr9101867561101867585+CDS,intron-Distal,intron-Proximal4.859644.70918K562FTO
chr9101867564101867640+CDS,intron-Distal,intron-Proximal3.325613.35044K562HNRNPM
chr9101867521101867583+CDS,intron-Distal7.5794526.74594HepG2DDX3X
chr9101867546101867636+CDS,intron-Distal,intron-Proximal4.067347.10584K562GEMIN5
chr9101894654101894784+CDS,intron-Distal,intron-Proximal3.9148210.37908K562KHSRP
chr9101894794101894806+CDS,intron-Distal3.967249.34382K562YBX3
chr9101900309101900370+CDS4.054103.38968HepG2BCLAF1
chr9101868175101868225+intron-Distal4.221463.99137K562NONO
chr9101867869101867965+intron-Distal4.442633.02711K562EWSR1
chr9101867870101867956+intron-Distal3.666527.88956K562CSTF2T
chr9101908624101908723+intron-Distal,intron-Proximal4.606286.51328K562KHSRP
chr9101893897101893959+intron-Distal3.983683.87596K562KHDRBS1
chr9101868117101868193+intron-Distal4.747706.10662K562HNRNPM
chr9101869900101869961+intron-Distal3.320743.32889K562MATR3
chr9101867886101867966+intron-Distal3.697938.59527K562NONO
chr9101867672101867748+intron-Distal,intron-Proximal4.611195.31505K562HNRNPM
chr9101867602101867661+intron-Distal,intron-Proximal3.544644.01575K562NONO
chr9101908541101908624+intron-Distal4.207303.02234K562KHSRP
chr9101902898101902971+intron-Distal4.374823.91475K562PTBP1
chr9101868071101868129+intron-Distal4.715026.08649K562CSTF2T
chr9101868065101868122+intron-Distal3.661663.75624K562AKAP8L
chr9101881407101881523+intron-Distal4.324254.51735HepG2QKI
chr9101874250101874484+intron-Distal4.011044.53229K562FUS
chr9101874696101874814+intron-Distal5.1314912.06736K562QKI
chr9101867899101867954+intron-Distal4.737683.68931K562XRCC6
chr9101874480101874586+intron-Distal3.208503.15041K562EXOSC5
chr9101868146101868211+intron-Distal3.695355.37374HepG2XPO5
chr9101881407101881482+intron-Distal4.107366.64835K562QKI
chr9101868064101868153+intron-Distal3.851829.97692K562NONO
chr9101867870101867960+intron-Distal3.011183.62115K562GTF2F1
chr9101867966101868027+intron-Distal4.329453.76710K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TGFBR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TGFBR1 is not available on ENCORE database.

  • 111 RBPs can affect the levels of TGFBR1.  








The Knockdown/knockout RNA-Seq assay for TGFBR1 is not available on ENCORE database.





111 RBPs can affect the gene expression of TGFBR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TGFBR1ENSG00000106799.81378.716301719.75520-0.318901.781501.34480HepG2AKAP1
TGFBR1ENSG00000106799.8490.36180718.31140-0.550803.604102.42200HepG2AKAP8
TGFBR1ENSG00000106799.8975.930701422.99920-0.544104.900903.86780HepG2ASCC1
TGFBR1ENSG00000106799.8560.71290876.17330-0.644004.178803.02980HepG2BCCIP
TGFBR1ENSG00000106799.8394.99840674.41560-0.771807.608506.67680HepG2BOP1
TGFBR1ENSG00000106799.8919.68260711.123200.370902.948202.15460HepG2CALR
TGFBR1ENSG00000106799.8869.343501351.93230-0.637004.942403.92550HepG2CIRBP
TGFBR1ENSG00000106799.8621.034101017.19130-0.7118014.4979013.22410HepG2CKAP4
TGFBR1ENSG00000106799.8559.65110916.87120-0.712202.293501.60110HepG2CNOT7
TGFBR1ENSG00000106799.8442.42810658.13360-0.572904.818303.38260HepG2CPSF7
TGFBR1ENSG00000106799.8880.332601153.47500-0.389904.558703.76980HepG2CELF1
TGFBR1ENSG00000106799.8582.52790734.80730-0.335002.516801.41690HepG2DDX1
TGFBR1ENSG00000106799.81067.70910797.134600.421503.519902.76270HepG2DDX21
TGFBR1ENSG00000106799.8990.72710780.129200.344702.720801.81650HepG2DDX24
TGFBR1ENSG00000106799.8343.15530806.11310-1.2321011.702109.37750HepG2DDX27
TGFBR1ENSG00000106799.81255.655301647.49450-0.391802.826102.19410HepG2DDX3X
TGFBR1ENSG00000106799.8410.09310861.41570-1.0708010.685409.28270HepG2DDX55
TGFBR1ENSG00000106799.8484.27610718.89730-0.570004.658303.36340HepG2DDX5
TGFBR1ENSG00000106799.81024.717701414.99840-0.465603.323502.65310HepG2DDX6
TGFBR1ENSG00000106799.8541.70060720.52070-0.411503.702102.89510HepG2DNAJC21
TGFBR1ENSG00000106799.8538.83830714.15670-0.406404.480903.68670HepG2DNAJC2
TGFBR1ENSG00000106799.8358.208501360.50400-1.9253031.8438029.98480HepG2EIF2S1
TGFBR1ENSG00000106799.81037.586701503.62890-0.535204.286203.49520HepG2EIF4A3
TGFBR1ENSG00000106799.8918.35260692.270100.407602.983301.85350HepG2ESF1
TGFBR1ENSG00000106799.82039.909001652.861700.303404.332703.60950HepG2ETF1
TGFBR1ENSG00000106799.8589.229101516.75950-1.3641015.9320014.41490HepG2FXR1
TGFBR1ENSG00000106799.8725.908001139.87460-0.6510011.131809.49060HepG2HNRNPA2B1
TGFBR1ENSG00000106799.8602.88900757.37650-0.329102.844402.11790HepG2HNRNPF
TGFBR1ENSG00000106799.8614.992201129.87910-0.8775022.4746020.74230HepG2HNRNPL
TGFBR1ENSG00000106799.8663.85290803.77420-0.275902.252701.70010HepG2HNRNPU
TGFBR1ENSG00000106799.8551.24260745.79870-0.436103.725502.89540HepG2IGF2BP1
TGFBR1ENSG00000106799.81049.177401430.44660-0.447203.558402.80200HepG2IGF2BP2
TGFBR1ENSG00000106799.8623.23100821.02880-0.397704.949403.99140HepG2ILF2
TGFBR1ENSG00000106799.8924.290401438.66620-0.638304.917903.54610HepG2KHSRP
TGFBR1ENSG00000106799.8957.152801517.28750-0.664706.893405.87210HepG2MAGOH
TGFBR1ENSG00000106799.81073.964601561.82150-0.540304.396503.60590HepG2NCBP2
TGFBR1ENSG00000106799.8680.833401229.91690-0.8532016.3150014.55240HepG2NOL12
TGFBR1ENSG00000106799.8490.85330790.77920-0.688002.988301.84760HepG2NONO
TGFBR1ENSG00000106799.8768.086101391.10990-0.8569010.121208.76030HepG2PABPC4
TGFBR1ENSG00000106799.8723.122401204.78960-0.7365014.8015013.57820HepG2PCBP1
TGFBR1ENSG00000106799.8679.52780519.520900.387303.488702.63050HepG2PRPF4
TGFBR1ENSG00000106799.8915.512201225.93880-0.421205.399604.68930HepG2PTBP1
TGFBR1ENSG00000106799.81414.455701174.042900.268701.879501.37440HepG2PUF60
TGFBR1ENSG00000106799.81045.568601245.37900-0.252301.991201.41640HepG2PUM2
TGFBR1ENSG00000106799.8816.180001036.25680-0.344404.031203.31320HepG2PUS1
TGFBR1ENSG00000106799.8354.847901327.67870-1.9036063.3638061.14590HepG2QKI
TGFBR1ENSG00000106799.8292.54800872.43370-1.5764014.7009013.19700HepG2RAVER1
TGFBR1ENSG00000106799.81864.510901381.506600.432506.563505.84680HepG2RBM22
TGFBR1ENSG00000106799.8817.321201204.97010-0.560006.498605.50500HepG2RBM25
TGFBR1ENSG00000106799.8890.170201270.72350-0.513507.824206.86580HepG2RECQL
TGFBR1ENSG00000106799.8488.67780715.79680-0.550706.875505.92770HepG2SAFB2
TGFBR1ENSG00000106799.8354.25520889.11940-1.3276015.7865013.44420HepG2SMNDC1
TGFBR1ENSG00000106799.8557.605001002.04240-0.845602.564801.32140HepG2SNRNP200
TGFBR1ENSG00000106799.81319.807901560.39640-0.241602.435001.95440HepG2SRFBP1
TGFBR1ENSG00000106799.81531.529801332.220900.201001.893801.48120HepG2SRSF1
TGFBR1ENSG00000106799.8846.045001083.84550-0.357404.212403.55810HepG2SRSF9
TGFBR1ENSG00000106799.8622.472601354.85560-1.1221023.0646021.90150HepG2SSB
TGFBR1ENSG00000106799.8341.55120539.00510-0.658204.634003.07740HepG2STAU1
TGFBR1ENSG00000106799.8712.645701318.31760-0.8874024.2718022.72400HepG2SUCLG1
TGFBR1ENSG00000106799.81775.520001197.493400.568109.929008.97160HepG2TAF15
TGFBR1ENSG00000106799.8178.14930574.85950-1.6901021.5523019.38390HepG2TFIP11
TGFBR1ENSG00000106799.8942.31920781.018700.270801.920701.48740HepG2TIAL1
TGFBR1ENSG00000106799.8527.76050787.99840-0.578307.645806.78560HepG2TRIM56
TGFBR1ENSG00000106799.8550.35070690.29790-0.326901.875301.34730HepG2U2AF1
TGFBR1ENSG00000106799.8612.856201166.75870-0.928902.769901.78040HepG2U2AF2
TGFBR1ENSG00000106799.8736.522701214.00410-0.721006.929305.57610HepG2UBE2L3
TGFBR1ENSG00000106799.8327.23660506.65640-0.630704.124403.19730HepG2UCHL5
TGFBR1ENSG00000106799.8428.77600949.40250-1.1468025.9924023.32310HepG2UTP18
TGFBR1ENSG00000106799.8561.39650891.76300-0.6676010.209909.17480HepG2UTP3
TGFBR1ENSG00000106799.8563.35020844.20730-0.583603.919603.06490HepG2XRN2
TGFBR1ENSG00000106799.8681.95440512.711600.411404.069703.27950HepG2ZC3H8
TGFBR1ENSG00000106799.8777.593501015.85530-0.385605.213204.52240HepG2ZNF622
TGFBR1ENSG00000106799.82064.922201510.780600.450708.471007.55010K562AGGF1
TGFBR1ENSG00000106799.81698.072802683.84610-0.660409.581408.59460K562AQR
TGFBR1ENSG00000106799.81353.282201575.63750-0.219502.254401.38820K562BCLAF1
TGFBR1ENSG00000106799.8389.67020538.59860-0.467003.145702.00480K562CCAR1
TGFBR1ENSG00000106799.81675.183902188.22110-0.385403.667702.18160K562CIRBP
TGFBR1ENSG00000106799.81325.966002126.32960-0.681304.352002.97490K562CNOT7
TGFBR1ENSG00000106799.81483.426702054.28000-0.469707.061805.26780K562CPEB4
TGFBR1ENSG00000106799.8891.849001195.35600-0.422603.420202.22590K562CSTF2
TGFBR1ENSG00000106799.81002.098701242.01060-0.309703.013901.74970K562DDX21
TGFBR1ENSG00000106799.81144.200301381.48990-0.271902.906501.54970K562DDX27
TGFBR1ENSG00000106799.81936.935201532.006200.338303.346402.18600K562DDX3X
TGFBR1ENSG00000106799.81614.906002126.05420-0.396706.484605.54560K562DDX47
TGFBR1ENSG00000106799.81372.354401682.77890-0.294203.508002.13020K562EIF2S1
TGFBR1ENSG00000106799.82693.732801791.872600.5880013.1641011.77590K562EIF2S2
TGFBR1ENSG00000106799.81088.737901406.98660-0.370004.363203.37340K562EIF3G
TGFBR1ENSG00000106799.81305.610101600.56920-0.293902.238901.49800K562EIF4A3
TGFBR1ENSG00000106799.8650.49330945.47410-0.539505.635103.78390K562EXOSC5
TGFBR1ENSG00000106799.81028.419001557.39410-0.598707.236505.80380K562FIP1L1
TGFBR1ENSG00000106799.82185.129301564.179700.482203.380002.58400K562G3BP2
TGFBR1ENSG00000106799.81380.269802387.94970-0.7908014.4423012.68810K562GRSF1
TGFBR1ENSG00000106799.8748.561001219.62850-0.704209.374108.32750K562HNRNPC
TGFBR1ENSG00000106799.8783.231901088.97160-0.475504.457002.96500K562HNRNPF
TGFBR1ENSG00000106799.81300.724901921.27140-0.562707.765305.90530K562HNRNPL
TGFBR1ENSG00000106799.81628.329902042.29470-0.326803.848802.79280K562HNRNPU
TGFBR1ENSG00000106799.82009.542801668.299800.268402.022501.32630K562KIF1C
TGFBR1ENSG00000106799.8566.73990783.65520-0.467502.491501.60880K562KRR1
TGFBR1ENSG00000106799.8909.614101236.64470-0.443103.492001.79720K562LIN28B
TGFBR1ENSG00000106799.81686.693102141.47630-0.344403.533702.47690K562MATR3
TGFBR1ENSG00000106799.82726.279801868.921800.544608.321006.57150K562MBNL1
TGFBR1ENSG00000106799.8599.26600895.85740-0.580105.890304.58610K562METAP2
TGFBR1ENSG00000106799.81032.738501430.16940-0.469707.718206.42820K562MTPAP
TGFBR1ENSG00000106799.82013.556101598.263400.333103.548802.14310K562NCBP2
TGFBR1ENSG00000106799.83829.209003075.319500.316203.223701.59830K562NOL12
TGFBR1ENSG00000106799.81085.983601589.00340-0.5491013.1620011.70290K562NSUN2
TGFBR1ENSG00000106799.8908.043001200.59780-0.402902.870001.41270K562NUSAP1
TGFBR1ENSG00000106799.82707.073702097.131000.368204.341002.61900K562PCBP1
TGFBR1ENSG00000106799.8788.838401202.64170-0.608405.679904.48200K562PCBP3
TGFBR1ENSG00000106799.8659.67100922.49220-0.483804.691503.64800K562POLR2G
TGFBR1ENSG00000106799.81146.059601767.89830-0.625407.789706.25700K562PPIG
TGFBR1ENSG00000106799.83729.641002084.660300.8391020.0325018.32110K562PTBP1
TGFBR1ENSG00000106799.84109.526703262.628900.332804.847903.40470K562PUM1
TGFBR1ENSG00000106799.82558.140101558.970200.7144010.337309.33340K562PUS1
TGFBR1ENSG00000106799.81921.747901519.037300.339204.108103.40240K562RBM15
TGFBR1ENSG00000106799.8612.99940997.44750-0.702408.838807.05850K562RCC2
TGFBR1ENSG00000106799.81030.017801588.49980-0.625008.289305.25690K562RECQL
TGFBR1ENSG00000106799.81151.404601936.77300-0.750305.410303.15060K562SBDS
TGFBR1ENSG00000106799.8854.872101464.48190-0.776603.338901.85430K562SFPQ
TGFBR1ENSG00000106799.8656.57840945.57550-0.526204.640903.21710K562SRFBP1
TGFBR1ENSG00000106799.81082.443602043.58770-0.9168019.5269017.65090K562SRSF1
TGFBR1ENSG00000106799.8520.98660793.25690-0.606503.081501.95620K562SRSF4
TGFBR1ENSG00000106799.81562.874701929.83060-0.304302.393501.42740K562SRSF5
TGFBR1ENSG00000106799.82138.619702676.76850-0.323803.407701.74220K562SUCLG1
TGFBR1ENSG00000106799.8636.350001264.93470-0.991207.968705.27520K562TFIP11
TGFBR1ENSG00000106799.81385.577501995.16740-0.526007.270805.84280K562TIA1
TGFBR1ENSG00000106799.8537.153401051.77130-0.9694011.019109.05420K562TIAL1
TGFBR1ENSG00000106799.81241.758701822.03170-0.553205.823303.68290K562TRIP6
TGFBR1ENSG00000106799.8619.19590874.33660-0.497803.214101.30210K562TRNAU1AP
TGFBR1ENSG00000106799.82021.629301516.443600.414702.956001.82070K562U2AF1
TGFBR1ENSG00000106799.8863.100001684.85740-0.9650030.3680028.29080K562UPF1
TGFBR1ENSG00000106799.81530.449001157.168000.403302.860501.63650K562UTP3
TGFBR1ENSG00000106799.81141.323101441.67370-0.337003.022302.10960K562WDR3
TGFBR1ENSG00000106799.82231.511703179.83880-0.510907.415405.32550K562WRN
TGFBR1ENSG00000106799.81056.582101495.24710-0.501003.043501.75510K562XRN2
TGFBR1ENSG00000106799.82354.945303023.45370-0.360503.654802.63660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TGFBR1 is not available on ENCORE database.





3 RBPs can affect the splicing of TGFBR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETGFBR1ENSG00000106799.8chr9+1019077781019078941019070131019071701019087661019088910.086000.001020.02130includedK562SRSF1
A3SSTGFBR1ENSG00000106799.8chr9+1018947781018950211018947901018950211018911361018913820.302000.000120.01016longerK562SF3B4
A3SSTGFBR1ENSG00000106799.8chr9+1018947781018950211018947901018950211018911361018913820.302000.001860.07308longerK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TGFBR1 is not avaliable on ENCORE database.