SMYD3

General Information

Gene Name       : SMYD3
Gene ID             : ENSG00000185420.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMYD3)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMYD3ENSG00000185420.1818.0312.4815.26ENCSR000AEF
HepG2SMYD3ENSG00000185420.1821.8619.1920.52ENCSR985KAT
K562SMYD3ENSG00000185420.18101.42103.51102.47ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq SMYD3-BGKcLV19-K562ENCSR775USNSMYD3K562ReleasedENCSR978MMZ   CRISPRKD% = 91.4,90.6
knockdown followed by RNA-seq SMYD3-BGHcLV20-HepG2ENCSR989GNVSMYD3HepG2ReleasedENCSR306EWE   CRISPRKD% = 99.0,99.0






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SMYD3ENCAB101UYPPA5-31919UA2701668DReleased, ENCODE4BGHcLV20-35, Released, ENCODE4BGKcLV19-49, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SMYD3K562CRISPRBGKcLV19-49,BGKcLV19-50BGKcLV19-1,BGKcLV19-288.7,89.2NotSatisfiedENCODE4
SMYD3K562CRISPRENCSR775USNENCSR978MMZSMYD3-BGKcLV19-51,SMYD3-BGKcLV19-52NT-BGKcLV19-1,NT-BGKcLV19-291.4,90.6ReleasedENCODE4
SMYD3HepG2CRISPRENCSR989GNVENCSR306EWESMYD3-BGHcLV20-35,SMYD3-BGHcLV20-36NT-BGHcLV20-1,NT-BGHcLV20-299.0,99.0ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
SMYD3Product_ID: PA5-31919
Lot_ID: UA2701668D
Source: Thermo Fisher
Target Name: SMYD3-human
smyd3-HEPG2-CRISPR-PA5-31919.png<br>Caption: Western blot following CRISPR against SMYD3 in HepG2 whole cell lysate using SMYD3 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against SMYD3. SMYD3 protein appears as the green arrow, Tubulin serves as a control and appears in red arrow.
ThermoFisher_PA5-31919_UA2701668D_SMYD3.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the NUP35 specific antibody, A301-781A. Lanes 1 and 3 are 2.5% of five million whole cell lysate input. Lanes 2 and 4 are 50% of IP enrichment from five million whole cell lysate using normal IgG antibody and the NUP35-specific antibody, A301-781A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
SMYD3-K562-CRISPR-PA5-31919.png<br>Caption: Western blot following CRISPR against SMYD3 in K562 whole cell lysate using SMYD3 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against SMYD3. SMYD3 protein appears as the green arrow, Tubulin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for SMYD3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • SMYD3 RNA is bound by 61 proteins.  







eCLIP assay for SMYD3 is not avaliable on ENCORE database.





61 proteins are bound to SMYD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1246093229246093240-3'-UTR,CDS,intron-Distal,intron-Proximal3.615238.62113K562YBX3
chr1246093164246093240-3'-UTR,CDS,intron-Distal,intron-Proximal3.148475.71022K562BUD13
chr1246489320246489350-3'-UTR,intron-Distal5.2831010.47957K562KHSRP
chr1246489058246489154-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.3780115.04708K562KHSRP
chr1246489285246489320-3'-UTR,intron-Distal3.998507.90970K562KHSRP
chr1246489163246489224-3'-UTR,intron-Distal3.145465.42536K562KHSRP
chr1246093200246093229-3'-UTR,CDS,intron-Distal3.5454510.50401K562YBX3
chr1246489147246489268-3'-UTR,intron-Distal4.195048.51210HepG2KHSRP
chr1246489378246489470-3'-UTR,intron-Distal3.8484711.21801K562KHSRP
chr1246670492246670544-5'-UTR,CDS,intron-Distal,intron-Proximal4.987403.69821K562DDX3X
chr1246670491246670548-5'-UTR,CDS,intron-Distal,intron-Proximal4.264105.11007HepG2GRWD1
chr1246350078246350180-5'-UTR,intron-Distal3.272538.95936K562ZNF622
chr1246646691246646779-5'-UTR,intron-Distal4.7629718.63259K562EXOSC5
chr1246647052246647128-5'-UTR,intron-Distal,intron-Proximal6.2190317.66037K562EXOSC5
chr1246646937246646978-5'-UTR,intron-Distal3.489788.56768K562EXOSC5
chr1246350007246350190-5'-UTR,intron-Distal,intron-Proximal3.631443.14726K562SRSF7
chr1246646782246646829-5'-UTR,intron-Distal4.3999313.07109K562EXOSC5
chr1246021837246021969-CDS,intron-Distal,intron-Proximal3.384185.15500HepG2BCLAF1
chr1246021790246021879-CDS,intron-Distal,intron-Proximal4.062483.49332HepG2PPIG
chr1246078831246078943-CDS,intron-Distal,intron-Proximal3.9949910.31199K562UPF1
chr1246091287246091383-CDS,intron-Distal,intron-Proximal3.626946.06585K562SF3B4
chr1246078919246078942-CDS,intron-Distal4.380555.37961K562YBX3
chr1246078874246078919-CDS,intron-Distal3.676726.19204K562YBX3
chr1246027098246027130-CDS,intron-Distal,intron-Proximal3.128376.50677K562UCHL5
chr1246021938246021972-CDS,intron-Distal,intron-Proximal4.023903.20743HepG2PPIG
chr1246027160246027189-CDS,intron-Distal,intron-Proximal3.286453.06830K562UPF1
chr1246078855246078943-CDS,intron-Distal,intron-Proximal3.274833.50904K562LIN28B
chr1246091232246091335-CDS,intron-Distal,intron-Proximal3.2957217.33250K562YBX3
chr1246490489246490596-CDS,intron-Distal,intron-Proximal3.994047.73111HepG2GRWD1
chr1246027100246027168-CDS,intron-Distal,intron-Proximal4.308413.79199HepG2PPIG
chr1246078864246078937-CDS,intron-Distal3.320094.19577K562UCHL5
chr1246021781246021803-CDS,intron-Distal,intron-Proximal3.679315.35619K562AQR
chr1246091232246091295-CDS,intron-Distal,intron-Proximal3.097763.44337K562METAP2
chr1246400815246400892-intron-Distal4.336514.85401HepG2CSTF2
chr1246345051246345101-intron-Distal5.4044610.99895HepG2HNRNPM
chr1246418413246418535-intron-Distal3.713966.73902K562SAFB2
chr1246423989246424036-intron-Distal3.934663.10243K562SLTM
chr1246489027246489107-intron-Distal,intron-Proximal3.050643.73766HepG2SFPQ
chr1246311991246312037-intron-Distal4.454635.11328HepG2SUGP2
chr1246447255246447291-intron-Distal3.389794.02190K562EXOSC5
chr1246074461246074493-intron-Distal4.749735.12432K562EXOSC5
chr1246383546246383605-intron-Distal3.096623.70333HepG2FUS
chr1246397730246397802-intron-Distal4.944255.76606K562EXOSC5
chr1246283617246283735-intron-Distal3.075376.17288K562SAFB2
chr1246394729246394794-intron-Distal3.220303.73266K562KHSRP
chr1246363553246363622-intron-Distal5.3282715.56192K562PTBP1
chr1246455554246455563-intron-Distal4.983604.80399K562EXOSC5
chr1246333634246333708-intron-Distal3.061743.51693K562KHDRBS1
chr1246460163246460271-intron-Distal4.817605.86803HepG2SFPQ
chr1246284126246284243-intron-Distal3.388437.18036K562SAFB2
chr1245978327245978397-intron-Distal4.807476.08869K562EXOSC5
chr1246383541246383594-intron-Distal3.374623.29341HepG2HNRNPUL1
chr1246290234246290317-intron-Distal3.258275.31346HepG2QKI
chr1246553945246554066-intron-Distal4.038093.90026K562KHSRP
chr1246388863246388905-intron-Distal4.111673.27829HepG2MATR3
chr1245914801245914902-intron-Distal4.449204.40847HepG2PTBP1
chr1246591837246591966-intron-Distal6.146769.75847HepG2DROSHA
chr1246546297246546370-intron-Distal5.098607.78465HepG2HNRNPM
chr1246309728246309759-intron-Distal4.118183.86809HepG2SUGP2
chr1246460657246460766-intron-Distal4.633849.44715HepG2QKI
chr1246226797246226900-intron-Distal3.266443.43220HepG2FAM120A
chr1246073129246073230-intron-Distal3.933864.08043K562HNRNPM
chr1246655706246655819-intron-Distal4.036803.23532K562MATR3
chr1245961970245962038-intron-Distal4.9530222.66302K562EIF4G2
chr1246309852246309911-intron-Distal3.574274.57452HepG2SUGP2
chr1246456089246456157-intron-Distal4.9882413.19522K562EXOSC5
chr1246255853246255931-intron-Distal4.177413.78162K562HNRNPM
chr1246363573246363636-intron-Distal4.154033.90241K562MATR3
chr1246484620246484698-intron-Distal3.131614.40834HepG2QKI
chr1246417263246417327-intron-Distal3.865493.81115K562LARP4
chr1246375239246375355-intron-Distal3.470036.85960K562KHSRP
chr1246363815246363870-intron-Distal4.189233.98115K562MATR3
chr1246591944246591997-intron-Distal3.926194.86325K562DDX6
chr1246247535246247581-intron-Distal4.008173.18683K562DGCR8
chr1246065911246065986-intron-Distal4.248554.75572K562MATR3
chr1246488264246488312-intron-Distal5.423889.99173HepG2CSTF2T
chr1246073002246073013-intron-Distal4.431025.12361K562EXOSC5
chr1246387893246387954-intron-Distal3.712846.91197HepG2MATR3
chr1246326854246326911-intron-Distal3.381004.43635HepG2CSTF2
chr1246423656246423717-intron-Distal4.460844.16015K562SAFB2
chr1246310063246310132-intron-Distal3.974817.43032K562MATR3
chr1246142856246142917-intron-Distal3.128613.99081K562NONO
chr1246113389246113445-intron-Distal3.890654.30679K562KHSRP
chr1246358010246358135-intron-Distal3.877933.30664K562NONO
chr1246363560246363615-intron-Distal3.659306.10762HepG2PTBP1
chr1245961947245962028-intron-Distal4.750574.36811K562FAM120A
chr1245927195245927314-intron-Distal,intron-Proximal3.369585.03897K562PRPF8
chr1246040241246040347-intron-Distal3.592904.51915K562MATR3
chr1246401582246401659-intron-Distal4.213177.60069K562SAFB2
chr1246383860246383899-intron-Distal4.411833.70058HepG2XPO5
chr1246591926246591971-intron-Distal5.9820916.78298HepG2RBFOX2
chr1246423121246423208-intron-Distal3.573294.74894HepG2HLTF
chr1246488191246488249-intron-Distal4.003216.86777K562CSTF2T
chr1246487848246487936-intron-Distal4.016468.01661K562ILF3
chr1246387977246388050-intron-Distal5.3483721.07505HepG2QKI
chr1245948899245948967-intron-Distal4.393083.18981K562PTBP1
chr1246039353246039446-intron-Distal3.553324.38938K562TARDBP
chr1245955375245955490-intron-Distal4.132327.54016K562TARDBP
chr1246181505246181632-intron-Distal4.439308.68660K562SAFB2
chr1246488563246488600-intron-Distal6.7833919.23199HepG2PCBP2
chr1246073959246074011-intron-Distal4.6969617.34220K562EXOSC5
chr1245978469245978530-intron-Distal4.141877.31419K562EXOSC5
chr1246363450246363548-intron-Distal4.5918922.36765K562PTBP1
chr1246226788246226877-intron-Distal4.162556.93263K562GTF2F1
chr1245961633245961712-intron-Distal5.232939.32163K562TARDBP
chr1246433362246433447-intron-Distal3.251605.95362K562SAFB2
chr1246616417246616525-intron-Distal4.975537.97897HepG2QKI
chr1246438559246438624-intron-Distal4.007023.01445K562EXOSC5
chr1246112354246112462-intron-Distal3.801933.38183K562NONO
chr1246198649246198771-intron-Distal3.839515.85821K562NONO
chr1246066728246066778-intron-Distal3.903793.01456K562EXOSC5
chr1246363300246363353-intron-Distal4.315005.01208K562MATR3
chr1246235645246235762-intron-Distal4.3877411.48146HepG2QKI
chr1246112054246112103-intron-Distal4.377933.06347K562NONO
chr1246591354246591423-intron-Distal4.406004.17759HepG2QKI
chr1246286930246287001-intron-Distal3.021653.31558K562KHDRBS1
chr1246421163246421213-intron-Distal4.117793.26547HepG2HLTF
chr1246596914246596971-intron-Distal4.682545.35792HepG2SUGP2
chr1246375260246375346-intron-Distal3.145024.43272HepG2CSTF2
chr1246363368246363468-intron-Distal5.328508.59433HepG2MATR3
chr1246141582246141624-intron-Distal4.158393.36882K562SLTM
chr1246328501246328564-intron-Distal4.465505.61723K562MATR3
chr1246241290246241359-intron-Distal4.139654.38266K562TARDBP
chr1246488399246488448-intron-Distal3.408793.72734HepG2CSTF2T
chr1246107575246107608-intron-Distal3.208503.15041K562EXOSC5
chr1246447032246447208-intron-Distal3.305004.31608K562HNRNPM
chr1246458843246458933-intron-Distal4.919806.41216K562EXOSC5
chr1246440310246440397-intron-Distal4.341738.21618HepG2HNRNPL
chr1246397699246397813-intron-Distal3.961433.43967HepG2TAF15
chr1246142036246142102-intron-Distal4.446823.60449K562YWHAG
chr1246596924246596972-intron-Distal5.9848915.31952K562EXOSC5
chr1246073052246073087-intron-Distal4.260398.21325K562EXOSC5
chr1246304991246305062-intron-Distal3.448844.93120K562KHSRP
chr1246458554246458604-intron-Distal4.498923.34098HepG2HNRNPM
chr1246258995246259100-intron-Distal3.167503.59509K562HNRNPM
chr1246417127246417168-intron-Distal4.229503.33164K562SAFB2
chr1246475841246475940-intron-Distal3.182356.59879K562PTBP1
chr1246344722246344802-intron-Distal3.680598.23930HepG2SUGP2
chr1246346747246346804-intron-Distal3.035964.46004HepG2SUGP2
chr1246072762246072818-intron-Distal4.359174.02846K562HNRNPM
chr1246309388246309441-intron-Distal4.107483.62025K562MATR3
chr1246136555246136607-intron-Distal4.466396.10779K562QKI
chr1246648906246648931-intron-Distal5.4657910.34009K562EXOSC5
chr1245928309245928376-intron-Distal3.438573.93348K562TARDBP
chr1246346048246346117-intron-Distal3.524968.19203HepG2HNRNPM
chr1246645794246645923-intron-Distal4.283173.54147K562HNRNPM
chr1246328207246328372-intron-Distal3.437934.53157HepG2MATR3
chr1246447073246447128-intron-Distal3.349394.46810K562EXOSC5
chr1246324396246324477-intron-Distal3.043563.23179HepG2RBFOX2
chr1246436163246436264-intron-Distal4.713397.78978K562SAFB2
chr1246283433246283519-intron-Distal3.013065.51984K562UCHL5
chr1246616419246616511-intron-Distal5.841068.73280K562QKI
chr1246283970246284073-intron-Distal3.339516.56297K562SAFB2
chr1246581784246581905-intron-Distal4.447708.58958K562LSM11
chr1246363130246363155-intron-Distal4.936825.81225K562PTBP1
chr1245921692245921771-intron-Distal3.105533.06830K562SAFB2
chr1246591971246592024-intron-Distal5.7932329.31574HepG2RBFOX2
chr1246066549246066622-intron-Distal4.412045.26569K562MATR3
chr1246455400246455413-intron-Distal4.375503.89080K562EXOSC5
chr1246423996246424049-intron-Distal3.222923.95154K562SAFB2
chr1246107210246107265-intron-Distal4.928795.44433K562EXOSC5
chr1246074309246074348-intron-Distal4.196276.11008K562EXOSC5
chr1246417260246417326-intron-Distal5.053996.03465K562SAFB2
chr1245961532245961584-intron-Distal4.9407316.75815K562EIF4G2
chr1246299957246300023-intron-Distal3.663338.90589K562HNRNPL
chr1246269118246269207-intron-Distal3.664735.32485HepG2SUGP2
chr1246336522246336566-intron-Distal5.073294.12480HepG2HNRNPM
chr1246648734246648788-intron-Distal4.013239.69846K562EXOSC5
chr1246475867246475988-intron-Distal4.105554.18579K562MATR3
chr1246488270246488395-intron-Distal5.6164013.94358K562PCBP1
chr1246215864246215935-intron-Distal4.133143.27618K562RBFOX2
chr1246647160246647270-intron-Distal,intron-Proximal7.4366342.28135K562EXOSC5
chr1246105898246105957-intron-Distal4.9591314.17115K562EXOSC5
chr1246074617246074639-intron-Distal3.677544.61282K562EXOSC5
chr1245978065245978183-intron-Distal4.588718.68494K562TARDBP
chr1246383540246383606-intron-Distal3.287265.71658HepG2NKRF
chr1246074732246074781-intron-Distal3.841038.17294K562EXOSC5
chr1246312230246312299-intron-Distal3.352226.55984HepG2SUGP2
chr1246363188246363254-intron-Distal5.8748211.49593K562PTBP1
chr1246480685246480748-intron-Distal4.080765.53837HepG2XPO5
chr1246545583246545695-intron-Distal5.013006.41216K562EXOSC5
chr1246488303246488369-intron-Distal4.496825.78562K562HNRNPK
chr1246489007246489037-intron-Distal,intron-Proximal4.663655.02888K562KHSRP
chr1246465492246465559-intron-Distal3.522014.61322HepG2MATR3
chr1246363281246363288-intron-Distal4.232123.42734K562PTBP1
chr1246454840246454979-intron-Distal4.3616815.45584K562KHSRP
chr1246657226246657292-intron-Distal3.444726.55884K562HNRNPM
chr1246291294246291429-intron-Distal4.5939913.78233K562KHSRP
chr1246312040246312110-intron-Distal3.016543.57317HepG2SUGP2
chr1246440881246440994-intron-Distal4.267565.02888K562KHSRP
chr1246545786246545836-intron-Distal4.740655.83754K562HNRNPM
chr1246140546246140628-intron-Distal3.071023.30843K562SLTM
chr1246456838246456886-intron-Distal5.064767.71416K562EXOSC5
chr1246040824246040903-intron-Distal4.698615.90588K562MATR3
chr1246488397246488432-intron-Distal3.341343.70624HepG2HNRNPK
chr1246417548246417602-intron-Distal4.230804.37667K562SAFB2
chr1245961478245961520-intron-Distal4.238539.22151K562EIF4G2
chr1246401589246401655-intron-Distal4.492743.32022K562UCHL5
chr1246335515246335560-intron-Distal4.196276.10949K562EXOSC5
chr1246363681246363785-intron-Distal4.6258215.64482HepG2PTBP1
chr1246128530246128653-intron-Distal5.579366.23225K562QKI
chr1246283319246283402-intron-Distal3.255123.45841K562HNRNPK
chr1245978042245978154-intron-Distal4.8128119.65235K562EIF4G2
chr1246440735246440800-intron-Distal3.910705.20902K562EXOSC5
chr1245930860245930954-intron-Distal3.558824.52780K562HNRNPK
chr1246235449246235526-intron-Distal5.9774812.16319HepG2QKI
chr1246649041246649094-intron-Distal5.214549.02315K562EXOSC5
chr1246346265246346325-intron-Distal4.093767.31365K562EXOSC5
chr1246387422246387461-intron-Distal3.265553.46325HepG2SUGP2
chr1246098381246098538-intron-Distal4.562554.96658K562KHSRP
chr1246627969246628057-intron-Distal3.399106.09178HepG2QKI
chr1245978354245978492-intron-Distal3.678515.58732K562HNRNPM
chr1246545119246545182-intron-Distal4.694094.27460K562HNRNPM
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chr1246488191246488351-intron-Distal4.6577219.82838K562ILF3
chr1246128826246128899-intron-Distal4.699885.62258K562KHSRP
chr1245961825245961868-intron-Distal6.0493414.44525K562EIF4G2
chr1246455535246455570-intron-Distal4.419643.60235HepG2HNRNPM
chr1246306385246306458-intron-Distal5.026126.02873K562TARDBP
chr1246488324246488397-intron-Distal5.7737613.63136HepG2HNRNPK
chr1246303711246303766-intron-Distal4.517198.08894HepG2QKI
chr1246346079246346147-intron-Distal3.640287.51551HepG2SUGP2
chr1246476978246477062-intron-Distal4.163293.50357HepG2QKI
chr1246105094246105139-intron-Distal4.249733.59909K562EXOSC5
chr1246471888246472018-intron-Distal3.032543.11628K562KHSRP
chr1246335115246335151-intron-Distal3.899154.91094K562EXOSC5
chr1246363780246363856-intron-Distal5.4577316.06251K562PTBP1
chr1246397623246397767-intron-Distal3.785823.19850K562FUS
chr1246358881246358938-intron-Distal4.098413.34609K562TARDBP
chr1246327308246327371-intron-Distal3.399124.33009HepG2SUGP2
chr1246434378246434421-intron-Distal4.032524.48810K562SAFB2
chr1246114215246114321-intron-Distal4.291306.68498K562QKI
chr1246163621246163674-intron-Distal3.825386.71492K562PTBP1
chr1246400828246400889-intron-Distal3.517454.74884K562SAFB2
chr1246328260246328408-intron-Distal4.922067.64982K562MATR3
chr1246488517246488562-intron-Distal5.0797310.72860HepG2DDX59
chr1246546334246546420-intron-Distal5.345937.88580K562HNRNPM
chr1246021661246021741-intron-Distal,intron-Proximal3.065883.51696K562KHSRP
chr1246592056246592117-intron-Distal5.8852115.61534K562RBFOX2
chr1246108138246108200-intron-Distal3.957253.01445K562EXOSC5
chr1246231281246231386-intron-Distal3.191645.80260K562HNRNPL
chr1246150835246150939-intron-Distal3.941823.18722K562KHDRBS1
chr1246430043246430133-intron-Distal4.6561219.62173K562PTBP1
chr1246040843246040907-intron-Distal3.391167.98280K562PTBP1
chr1246395063246395127-intron-Distal4.389794.80466K562EXOSC5
chr1246447084246447121-intron-Distal4.809666.44072HepG2HNRNPM
chr1246346171246346221-intron-Distal4.0534510.24677K562HNRNPM
chr1246418954246419009-intron-Distal4.404214.79322K562SAFB2
chr1246416540246416624-intron-Distal4.989407.97284K562SAFB2
chr1246298957246299048-intron-Distal3.180947.33493K562KHSRP
chr1246591912246591963-intron-Distal5.3569511.71991K562RBFOX2
chr1246488307246488380-intron-Distal7.0158926.66084HepG2DDX59
chr1246591966246592103-intron-Distal4.336859.89272HepG2DROSHA
chr1246400445246400572-intron-Distal3.832909.56667K562SAFB2
chr1246657224246657261-intron-Distal3.618214.91037K562EXOSC5
chr1245978060245978133-intron-Distal5.254017.71416K562EXOSC5
chr1246657004246657018-intron-Distal3.961533.30687K562EXOSC5
chr1246597716246597755-intron-Distal4.111313.30687K562EXOSC5
chr1246142006246142114-intron-Distal3.043984.47424K562SLTM
chr1246303575246303626-intron-Distal4.120577.56258HepG2QKI
chr1246346175246346224-intron-Distal3.627167.46034HepG2HNRNPM
chr1245961598245961708-intron-Distal6.7375457.63913K562EIF4G2
chr1246554120246554197-intron-Distal3.816623.26999K562KHSRP
chr1246341038246341104-intron-Distal3.343125.70457K562QKI
chr1246585258246585326-intron-Distal3.881213.16028HepG2SUGP2
chr1246467593246467650-intron-Distal4.281913.30328HepG2SFPQ
chr1246648788246648828-intron-Distal4.714545.76606K562EXOSC5
chr1246343992246344068-intron-Distal3.907203.63094K562HNRNPC
chr1246283145246283222-intron-Distal4.8683331.89509K562CSTF2T
chr1246545351246545406-intron-Distal5.082106.09831K562HNRNPM
chr1246335420246335509-intron-Distal4.644337.79138K562HNRNPM
chr1246474244246474352-intron-Distal5.114807.43163HepG2QKI
chr1246488205246488236-intron-Distal3.891636.42478HepG2DDX59
chr1246387699246387789-intron-Distal5.8797615.06634HepG2QKI
chr1246387573246387628-intron-Distal3.139094.67779HepG2SUGP2
chr1246596487246596564-intron-Distal4.749736.08953K562EXOSC5
chr1245978611245978664-intron-Distal3.385063.72952K562EXOSC5
chr1246455000246455077-intron-Distal4.757094.66110HepG2SFPQ
chr1246488312246488382-intron-Distal8.0789455.68701HepG2PCBP2
chr1246345535246345573-intron-Distal3.844805.80937K562EXOSC5
chr1246430047246430131-intron-Distal4.8292313.60120HepG2PTBP1
chr1246315406246315505-intron-Distal4.396755.04209K562MATR3
chr1246016836246016897-intron-Distal4.362443.28572K562HNRNPM
chr1246075516246075578-intron-Distal4.646845.44433K562EXOSC5
chr1246467370246467452-intron-Distal4.484324.79379K562KHSRP
chr1246639259246639412-intron-Distal4.404084.79379K562KHSRP
chr1246421162246421295-intron-Distal3.904438.76064K562SAFB2
chr1246363709246363788-intron-Distal4.203893.68462HepG2MATR3
chr1246307926246308005-intron-Distal3.043003.51693K562KHDRBS1
chr1246455949246455976-intron-Distal4.160737.01333K562EXOSC5
chr1246471824246471903-intron-Distal3.058414.25236HepG2HNRNPM
chr1246166298246166357-intron-Distal3.600604.12870K562PTBP1
chr1246545644246545717-intron-Distal4.875385.04680K562HNRNPM
chr1246438060246438155-intron-Distal4.623956.44435K562SAFB2
chr1246455118246455173-intron-Distal3.981526.25647K562HNRNPM
chr1246656735246656784-intron-Distal3.931026.10949K562EXOSC5
chr1246345809246345908-intron-Distal5.7097213.15154K562HNRNPM
chr1246112044246112113-intron-Distal4.054053.96304K562CSTF2T
chr1246490297246490382-intron-Distal4.936425.68841K562KHSRP
chr1246074011246074043-intron-Distal3.749734.31711K562EXOSC5
chr1246344010246344066-intron-Distal3.870243.03357HepG2HNRNPC
chr1246213861246213922-intron-Distal3.829283.23532K562MATR3
chr1246650010246650095-intron-Distal4.190087.61413K562EXOSC5
chr1246363350246363450-intron-Distal5.7967622.70665K562PTBP1
chr1246332522246332589-intron-Distal3.494774.33990HepG2QKI
chr1246140550246140658-intron-Distal5.179728.33469K562YWHAG
chr1246020567246020670-intron-Distal3.575313.04470K562FUS
chr1246106531246106583-intron-Distal4.591989.69330K562EXOSC5
chr1246487808246487899-intron-Distal4.421278.63559HepG2ILF3
chr1246141682246141713-intron-Distal3.809273.00828K562YWHAG
chr1246106055246106104-intron-Distal4.850926.09831K562HNRNPM
chr1246190429246190482-intron-Distal3.308123.26015K562PTBP1
chr1246345830246345907-intron-Distal5.6857912.65719K562EXOSC5
chr1246657430246657468-intron-Distal4.696275.12432K562EXOSC5
chr1246488092246488125-intron-Distal3.944663.03048HepG2GTF2F1
chr1246335405246335515-intron-Distal5.5591921.71865K562EXOSC5
chr1246065923246066008-intron-Distal3.935179.23955K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMYD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMYD3 is not available on ENCORE database.

  • 79 RBPs can affect the levels of SMYD3.  








The Knockdown/knockout RNA-Seq assay for SMYD3 is not available on ENCORE database.





79 RBPs can affect the gene expression of SMYD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMYD3ENSG00000185420.14229.15330315.26070-0.460202.269301.70850HepG2ACO1
SMYD3ENSG00000185420.14632.35310449.196400.493304.832303.96620HepG2AUH
SMYD3ENSG00000185420.14220.04510315.10580-0.518002.948602.26650HepG2CKAP4
SMYD3ENSG00000185420.14900.97630265.844301.7608015.7848014.01630HepG2CNOT7
SMYD3ENSG00000185420.14352.19290451.54960-0.358502.127001.55170HepG2CELF1
SMYD3ENSG00000185420.14363.48320540.82850-0.573303.633102.95850HepG2EIF2S1
SMYD3ENSG00000185420.14165.90340241.89210-0.544002.107301.31020HepG2EIF3D
SMYD3ENSG00000185420.14280.64830581.94500-1.052108.094106.94810HepG2EIF4B
SMYD3ENSG00000185420.14405.24420603.07730-0.573603.945803.12930HepG2FXR1
SMYD3ENSG00000185420.14358.66940559.40780-0.641204.445003.61030HepG2G3BP1
SMYD3ENSG00000185420.14181.27490261.85120-0.530602.263201.67410HepG2HNRNPA1
SMYD3ENSG00000185420.14234.15720142.729000.714103.273402.59530HepG2HNRNPLL
SMYD3ENSG00000185420.14336.52930568.61340-0.756706.128505.16080HepG2IGF2BP2
SMYD3ENSG00000185420.14261.01320533.66910-1.031803.802902.64740HepG2IGF2BP3
SMYD3ENSG00000185420.14221.02150295.54640-0.419202.559901.85250HepG2ILF2
SMYD3ENSG00000185420.14358.23860571.95110-0.675004.097102.85710HepG2KHSRP
SMYD3ENSG00000185420.14291.23130603.28820-1.0507010.735309.46800HepG2MAGOH
SMYD3ENSG00000185420.14211.92540606.65390-1.5173018.0132016.51860HepG2MATR3
SMYD3ENSG00000185420.14373.42010620.93530-0.733605.701804.80770HepG2NCBP2
SMYD3ENSG00000185420.14357.29890481.40220-0.430102.847402.07260HepG2NOL12
SMYD3ENSG00000185420.1494.60810259.10270-1.453507.759405.90620HepG2NONO
SMYD3ENSG00000185420.14373.52700586.10440-0.649907.396306.48280HepG2PCBP1
SMYD3ENSG00000185420.14319.67480226.229200.498703.117702.30170HepG2PRPF4
SMYD3ENSG00000185420.14320.12430596.38520-0.8976012.2898011.29960HepG2PTBP1
SMYD3ENSG00000185420.14302.83460487.85220-0.687907.560206.68010HepG2PUM1
SMYD3ENSG00000185420.14208.67420645.89560-1.6300030.5299028.80290HepG2QKI
SMYD3ENSG00000185420.14336.53700586.19340-0.800608.315607.19540HepG2RBM25
SMYD3ENSG00000185420.14425.56840663.71780-0.641207.177706.37670HepG2NELFE
SMYD3ENSG00000185420.14382.84050618.16600-0.691308.029807.06100HepG2RECQL
SMYD3ENSG00000185420.14141.13340235.39900-0.738004.019103.29210HepG2RPS19
SMYD3ENSG00000185420.14149.72920236.21630-0.657803.204302.18960HepG2SERBP1
SMYD3ENSG00000185420.14301.98640620.91030-1.0399015.6307014.40140HepG2SF3B4
SMYD3ENSG00000185420.14188.51980300.48230-0.672604.972604.15170HepG2SMN1
SMYD3ENSG00000185420.14376.62600648.09750-0.7831010.192509.41210HepG2SRSF1
SMYD3ENSG00000185420.14252.16120453.76110-0.847609.128008.07950HepG2SRSF5
SMYD3ENSG00000185420.14241.60440527.26310-1.1259017.8915016.71160HepG2SRSF9
SMYD3ENSG00000185420.14630.58900422.719700.576906.614305.88580HepG2SSB
SMYD3ENSG00000185420.14387.19150516.03540-0.414403.229002.56760HepG2SUCLG1
SMYD3ENSG00000185420.14383.71460535.27000-0.480203.568302.62350HepG2TIA1
SMYD3ENSG00000185420.14405.35480281.144300.527803.540202.98910HepG2TIAL1
SMYD3ENSG00000185420.14214.64750283.65630-0.402202.100101.59590HepG2TRIM56
SMYD3ENSG00000185420.14331.85110475.26560-0.518202.456401.67170HepG2UBE2L3
SMYD3ENSG00000185420.14191.49610277.85870-0.537003.066802.44180HepG2UTP3
SMYD3ENSG00000185420.14405.78140789.38820-0.960004.692902.43400K562ADAR
SMYD3ENSG00000185420.141759.310602549.47250-0.535206.144204.17780K562APOBEC3C
SMYD3ENSG00000185420.141303.533202545.40970-0.9655012.8778011.74550K562AQR
SMYD3ENSG00000185420.14512.00420772.91520-0.594203.125301.98970K562CCAR1
SMYD3ENSG00000185420.142347.224803553.25650-0.5982012.3239010.35010K562CELF1
SMYD3ENSG00000185420.141905.615701490.384600.354503.505802.31470K562DDX3X
SMYD3ENSG00000185420.14536.92470865.18570-0.688303.955102.31910K562DHX30
SMYD3ENSG00000185420.143114.264002637.728000.239502.918702.01670K562DKC1
SMYD3ENSG00000185420.14456.96040881.06910-0.947204.787902.44260K562DNAJC2
SMYD3ENSG00000185420.14872.234201219.99050-0.484103.272101.87050K562EEF2
SMYD3ENSG00000185420.14903.747601178.61900-0.383102.994902.04520K562EFTUD2
SMYD3ENSG00000185420.142470.884801390.095900.8297020.3035018.61860K562EIF2S2
SMYD3ENSG00000185420.14501.76910786.22550-0.647903.582602.42260K562EIF3A
SMYD3ENSG00000185420.141545.923501076.904800.521503.845102.91630K562EIF3G
SMYD3ENSG00000185420.142073.388501557.039300.413104.107203.10900K562EIF4A3
SMYD3ENSG00000185420.141998.317602889.39800-0.5320011.9756010.09800K562EIF4G2
SMYD3ENSG00000185420.14818.022101619.24770-0.9851026.6452024.89060K562FXR1
SMYD3ENSG00000185420.142366.003701852.195200.353102.830302.06680K562GRSF1
SMYD3ENSG00000185420.141227.296801657.49650-0.433504.916603.49990K562HNRNPA1
SMYD3ENSG00000185420.142493.659501275.137200.9675011.9659010.34110K562HSPD1
SMYD3ENSG00000185420.14427.37900628.73150-0.556903.160602.15490K562KRR1
SMYD3ENSG00000185420.141122.370402074.47500-0.8862018.5914016.13730K562MATR3
SMYD3ENSG00000185420.141997.275001554.858500.361103.959102.47020K562NCBP2
SMYD3ENSG00000185420.141159.219701434.32470-0.307202.246301.56750K562NSUN2
SMYD3ENSG00000185420.14490.707601260.64000-1.3612018.2751016.21040K562PCBP3
SMYD3ENSG00000185420.14376.74830967.00530-1.3599017.8680015.92990K562POLR2G
SMYD3ENSG00000185420.141844.945001068.010100.788606.220204.90580K562PPIG
SMYD3ENSG00000185420.14750.736001146.93770-0.611406.207505.08300K562PRPF8
SMYD3ENSG00000185420.141690.216702019.58340-0.256802.213901.60950K562PTBP1
SMYD3ENSG00000185420.142288.304203152.48230-0.462205.798504.62230K562PUF60
SMYD3ENSG00000185420.141196.673201936.52960-0.6944010.023108.26870K562RBM22
SMYD3ENSG00000185420.14979.676001413.94590-0.529404.098801.87860K562SAFB2
SMYD3ENSG00000185420.14456.73040861.46350-0.915409.745407.78180K562SAFB
SMYD3ENSG00000185420.14636.69920890.72530-0.484403.682102.00480K562SDAD1
SMYD3ENSG00000185420.14502.43520700.25860-0.479002.929101.92780K562SF3B1
SMYD3ENSG00000185420.141343.471601673.29500-0.316703.152702.23910K562SF3B4
SMYD3ENSG00000185420.14579.79660851.45510-0.554402.884301.59570K562SLBP
SMYD3ENSG00000185420.14610.58110917.80940-0.588005.720004.09400K562SRFBP1
SMYD3ENSG00000185420.141048.174301979.86710-0.9175019.7115017.82160K562SRSF1
SMYD3ENSG00000185420.14769.064101029.67430-0.421003.617302.39050K562SRSF4
SMYD3ENSG00000185420.141560.461101110.793000.490302.745701.47600K562SSB
SMYD3ENSG00000185420.14818.980801110.19600-0.438903.160002.07210K562SUPV3L1
SMYD3ENSG00000185420.14551.82700969.86040-0.813609.416907.89880K562SYNCRIP
SMYD3ENSG00000185420.141552.351902003.75030-0.368203.089802.34090K562TARDBP
SMYD3ENSG00000185420.14878.696401084.32720-0.303402.111701.30120K562TRIM56
SMYD3ENSG00000185420.142308.998301520.856800.602306.810905.73890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMYD3 is not available on ENCORE database.





13 RBPs can affect the splicing of SMYD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.309000.000000.00000excludedK562SF3B4
SESMYD3ENSG00000185420.14chr1-245927377245927451245912864245912966246021797246021972-0.119000.001920.03551excludedK562SF3B4
SESMYD3ENSG00000185420.14chr1-245927342245927451245912864245912966246021797246021972-0.085000.000070.00448excludedK562PRPF8
SESMYD3ENSG00000185420.14chr1-246350044246350244246093171246093239246356976246357029-0.214000.000770.03080excludedK562PRPF8
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.100000.003330.09103excludedK562PRPF8
SESMYD3ENSG00000185420.14chr1-245927342245927451245912643245912966246021797246021983-0.059000.000050.00097excludedK562AQR
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091358-0.131000.000010.00021excludedK562AQR
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.067000.000010.00046excludedK562PUS1
SESMYD3ENSG00000185420.14chr1-245927342245927451245912864245912966246021797246021972-0.051000.000120.03008excludedK562MTPAP
SESMYD3ENSG00000185420.14chr1-245927342245927451245912864245912966246021797246021972-0.107000.000000.00018excludedK562EFTUD2
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.125000.000020.00098excludedK562U2AF1
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.081000.000890.05841excludedK562HNRNPL
SESMYD3ENSG00000185420.14chr1-2459273422459274512459128642459129662460217972460219720.159000.000960.09403includedHepG2HNRNPUL1
SESMYD3ENSG00000185420.14chr1-245927342245927451245912864245912966246021797246021972-0.095000.000260.01036excludedHepG2SF3A3
SESMYD3ENSG00000185420.14chr1-2459273422459274512459128642459129662460217972460219720.077000.000910.07743includedHepG2SUPV3L1
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.070000.000030.00139excludedK562RBM15
SESMYD3ENSG00000185420.14chr1-245927342245927451245912864245912966246021797246021972-0.081000.000250.01400excludedK562SF3B1
SESMYD3ENSG00000185420.14chr1-246078831246078942246027100246027188246091232246091335-0.257000.000000.00009excludedK562SF3B1
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913142460271002460271882461516952461518640.080000.000080.004611includedK562RBM15
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913142460271002460271882461516952461518640.079000.000030.001341includedK562PUS1
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913852460271002460271882460931712460932390.175000.000000.000011includedK562AQR
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913352460271002460271882460931712460932390.111000.000450.004561includedK562AQR
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913582460271002460271882460931712460932390.172000.000000.000021includedK562AQR
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913142460271002460271882461516952461518640.143000.000230.010561includedK562EFTUD2
MXESMYD3ENSG00000185420.14chr1-2460788312460789422460912322460913352460271002460271882460931712460932390.183000.002320.039781includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMYD3 is not avaliable on ENCORE database.