SMARCA4

General Information

Gene Name       : SMARCA4
Gene ID             : ENSG00000127616.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SMARCA4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCA4ENSG00000127616.1822.0643.2332.64ENCSR000AEF
HepG2SMARCA4ENSG00000127616.1885.1643.6364.39ENCSR985KAT
K562SMARCA4ENSG00000127616.1885.4966.2975.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCA4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMARCA4 RNA is bound by 45 proteins.  







eCLIP assay for SMARCA4 is not avaliable on ENCORE database.





45 proteins are bound to SMARCA4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191117285611172883+3'-UTR,intron-Distal3.235344.11795K562YBX3
chr191117256711172625+3'-UTR,intron-Distal3.231355.75036K562PUM2
chr191117255211172582+3'-UTR,intron-Distal4.083533.56019HepG2GRWD1
chr191117265011172704+3'-UTR,intron-Distal3.102883.94979HepG2BCLAF1
chr191117262911172701+3'-UTR,intron-Distal3.1616115.34188K562UCHL5
chr191117285511172904+3'-UTR,intron-Distal4.433935.47880HepG2SUB1
chr191117255811172616+3'-UTR,intron-Distal3.511463.67254K562YWHAG
chr191117284511172895+3'-UTR,intron-Distal4.832516.50203HepG2GRWD1
chr191117249411172544+3'-UTR,intron-Distal3.587429.42877K562GRWD1
chr191117256411172597+3'-UTR,intron-Distal3.9805712.23733K562ZNF622
chr191117257811172693+3'-UTR,intron-Distal3.271673.43531K562APOBEC3C
chr191117263211172651+3'-UTR,intron-Distal4.1143610.37409K562ZNF622
chr191117263111172693+3'-UTR,intron-Distal4.1312210.75904HepG2SUB1
chr191117249211172542+3'-UTR,intron-Distal3.402244.89942HepG2GRWD1
chr191117277011172855+3'-UTR,intron-Distal4.1571311.98121HepG2SUB1
chr191117262511172697+3'-UTR,intron-Distal4.500873.42472HepG2FXR2
chr191117247411172545+3'-UTR,CDS,intron-Distal3.0483116.28219K562PUM1
chr191117245911172495+3'-UTR,CDS,intron-Distal,intron-Proximal6.6593524.19412K562UCHL5
chr191117263911172691+3'-UTR,intron-Distal3.646809.03588K562GRWD1
chr191117261711172709+3'-UTR,intron-Distal4.1098714.79781K562PABPC4
chr191117265111172674+3'-UTR,intron-Distal3.6308812.17136K562ZNF622
chr191117246511172531+3'-UTR,CDS,intron-Distal3.364794.38944K562TRA2A
chr191117249511172592+3'-UTR,intron-Distal4.3588432.07997K562UCHL5
chr191107174511071848+5'-UTR3.412425.08489K562FXR2
chr191109474811094810+5'-UTR,intron-Proximal4.230169.48554K562SF3B4
chr191107191611072003+5'-UTR,intron-Distal,intron-Proximal3.232095.89182K562EFTUD2
chr191107167211071715+5'-UTR4.264178.77659K562PUM1
chr191109482211094944+5'-UTR,CDS4.3002727.77350K562PCBP1
chr191109481411094894+5'-UTR,CDS3.828745.00225K562GEMIN5
chr191107222811072288+5'-UTR,intron-Distal4.370683.76710K562NONO
chr191107191511072001+5'-UTR,intron-Distal,intron-Proximal3.334425.37861K562GEMIN5
chr191107191511072002+5'-UTR,intron-Distal,intron-Proximal4.823077.21143HepG2EFTUD2
chr191107167411071781+5'-UTR3.043514.56947K562GEMIN5
chr191113262411132640+CDS3.648424.17219K562METAP2
chr191117050811170561+CDS3.9910119.24938K562UCHL5
chr191109835811098524+CDS3.3339124.95892K562PUM1
chr191110688711106990+CDS,intron-Proximal3.400684.88178HepG2FXR2
chr191109847511098514+CDS4.3144012.34066K562UCHL5
chr191114408911144129+CDS,intron-Distal,intron-Proximal3.124266.16987K562UCHL5
chr191113697711137000+CDS4.097814.01763HepG2GRWD1
chr191112108411121123+CDS5.5271710.69860K562FMR1
chr191114396211143988+CDS,intron-Proximal3.534195.52031HepG2GRWD1
chr191110688811107030+CDS,intron-Proximal4.0673345.86909K562UCHL5
chr191116893411168954+CDS3.7961311.34892K562UCHL5
chr191109688411096976+CDS3.299465.73961K562GEMIN5
chr191115204811152092+CDS4.636188.58706K562UCHL5
chr191109835211098372+CDS4.960497.81156K562BUD13
chr191113037411130387+CDS,intron-Proximal3.5462916.31110K562AQR
chr191115212911152162+CDS4.416748.63879K562UCHL5
chr191111402011114066+CDS4.3172521.48796K562UCHL5
chr191109602311096075+CDS3.260586.10930K562FXR2
chr191110699111107030+CDS3.124467.71640K562ZNF622
chr191113860411138627+CDS,intron-Proximal3.058763.92867K562METAP2
chr191110551711105601+CDS4.314725.06180HepG2BCLAF1
chr191111858811118625+CDS4.2291222.68167K562UCHL5
chr191114146411141527+CDS4.1804914.73634K562METAP2
chr191111401711114034+CDS3.212219.65936K562PUM1
chr191109693411096994+CDS3.213725.37040K562FMR1
chr191113502311135109+CDS3.796688.53736K562FMR1
chr191115204311152086+CDS4.742566.92104HepG2GRWD1
chr191115197111152042+CDS,intron-Proximal4.415554.10368HepG2TRA2A
chr191111401911114068+CDS3.0903024.98636K562ZNF800
chr191109852911098589+CDS3.042327.73943K562PUM1
chr191114564411145672+CDS,intron-Proximal3.533725.32794K562FXR2
chr191114391711143997+CDS,intron-Proximal5.3088131.51849K562SF3B4
chr191111371911113803+CDS3.6300120.19789K562UCHL5
chr191117049311170561+CDS3.6794623.64674K562ZNF622
chr191114482211144878+CDS,intron-Distal,intron-Proximal4.167647.91706K562FMR1
chr191113257211132624+CDS3.9402816.15076K562YBX3
chr191117053711170560+CDS3.370643.76985K562MTPAP
chr191110551011105536+CDS3.305207.83156K562ZNF622
chr191113026811130332+CDS4.251159.88739K562FXR2
chr191110690611106935+CDS3.503953.79741HepG2GRWD1
chr191114559011145638+CDS,intron-Distal,intron-Proximal3.678837.53312K562FXR2
chr191117045511170508+CDS4.6619017.85310K562UCHL5
chr191113612511136165+CDS3.730296.36816K562YBX3
chr191109694711096987+CDS3.905715.63221K562METAP2
chr191114155011141588+CDS,intron-Proximal4.515934.67689HepG2PPIG
chr191113035411130364+CDS3.711193.84718K562METAP2
chr191114391511143990+CDS,intron-Proximal5.2697313.78156HepG2SF3B4
chr191113026611130331+CDS,intron-Proximal3.612087.00091K562FMR1
chr191114568111145731+CDS,intron-Proximal4.987208.08487HepG2GRWD1
chr191113495811135034+CDS,intron-Proximal4.0463010.56837K562SF3B4
chr191116895611169018+CDS3.424786.39282HepG2GRWD1
chr191110550211105604+CDS,intron-Proximal4.004244.68025HepG2FTO
chr191111402011114073+CDS3.206414.16775K562TRA2A
chr191112112311121179+CDS4.4360114.08950K562FMR1
chr191110718311107220+CDS4.771554.91614HepG2GRWD1
chr191113240411132461+CDS3.781699.33771K562METAP2
chr191112362811123656+CDS3.8388310.82249K562UCHL5
chr191111405111114075+CDS,intron-Proximal3.923584.68575HepG2FXR2
chr191111857711118613+CDS,intron-Proximal3.0460818.18004K562PUM1
chr191114155711141568+CDS5.394658.80307K562UCHL5
chr191115222211152237+CDS,intron-Proximal3.002258.40909K562PUM1
chr191112108411121183+CDS4.7678313.84664K562FXR2
chr191113264211132653+CDS,intron-Proximal3.729448.31368K562AQR
chr191116895311168984+CDS3.244509.61069K562YBX3
chr191112967311129698+CDS4.438424.91614HepG2GRWD1
chr191116947611169527+CDS3.917143.48757K562TRA2A
chr191113238911132422+CDS,intron-Proximal3.009928.11691K562AQR
chr191114485711144876+CDS,intron-Distal4.334213.79347HepG2GRWD1
chr191115206011152078+CDS3.872518.62113K562YBX3
chr191111402911114073+CDS3.347554.71502HepG2GRWD1
chr191113031611130339+CDS3.154085.96307K562BUD13
chr191113240011132463+CDS,intron-Proximal3.878833.93112K562RBM15
chr191110717411107221+CDS,intron-Proximal3.6571018.31292K562PUM1
chr191109999211100023+CDS,intron-Proximal3.688336.11414K562BUD13
chr191114580311145883+CDS,intron-Proximal3.8060618.38902HepG2PRPF8
chr191114147511141525+CDS4.8064112.34900K562FMR1
chr191111866911118694+CDS3.255518.30824K562GRWD1
chr191110010511100119+CDS3.185697.96329K562UCHL5
chr191114567111145731+CDS,intron-Proximal4.4027310.07191K562FMR1
chr191111857611118626+CDS,intron-Proximal3.2056427.50183K562ZNF622
chr191109492711094963+CDS3.346515.36360K562METAP2
chr191110007511100119+CDS3.621688.07380HepG2GRWD1
chr191111857611118644+CDS,intron-Proximal3.3340012.39557K562FXR2
chr191109853611098593+CDS4.365137.85254K562FMR1
chr191117046211170500+CDS3.455853.60157HepG2GRWD1
chr191109859911098621+CDS,intron-Proximal4.060868.27931K562AQR
chr191117077411170852+CDS4.2710421.92771K562UCHL5
chr191111370311113720+CDS,intron-Proximal3.972258.83090K562FXR2
chr191111370511113803+CDS3.284006.49533K562DDX24
chr191117072311170761+CDS3.5106514.50016K562UCHL5
chr191115203611152060+CDS3.476887.76316K562YBX3
chr191110557811105632+CDS3.006415.61744K562FXR2
chr191115197911152026+CDS,intron-Proximal4.6173616.28549K562UCHL5
chr191111370411113822+CDS,intron-Proximal3.649386.47196HepG2BCLAF1
chr191114558811145662+CDS,intron-Distal,intron-Proximal4.4714814.16595K562FMR1
chr191116893111168956+CDS,intron-Proximal3.098685.33987HepG2GRWD1
chr191117083711170864+CDS,intron-Proximal4.118103.06934HepG2FXR2
chr191111857611118586+CDS,intron-Proximal3.018596.88117K562BUD13
chr191109597911096078+CDS3.2638716.49895K562PUM1
chr191113502611135085+CDS3.632187.33300K562FXR2
chr191114141311141462+CDS3.758258.10680HepG2GRWD1
chr191111865511118701+CDS,intron-Proximal3.364794.38944K562TRA2A
chr191111857711118588+CDS,intron-Proximal4.4311620.29732K562UCHL5
chr191111861511118680+CDS3.5548727.74606K562ZNF800
chr191114154511141571+CDS,intron-Proximal3.593085.10069HepG2GRWD1
chr191112365611123703+CDS3.278327.93618K562UCHL5
chr191112965811129697+CDS3.622166.22645K562FXR2
chr191110692511106970+CDS4.1034210.35242K562FXR2
chr191110563211105676+CDS3.8579214.25091K562UCHL5
chr191111373111113820+CDS3.8841722.49755K562ZNF622
chr191114403311144136+CDS,intron-Distal,intron-Proximal4.5277210.41018HepG2GRWD1
chr191113257711132643+CDS3.035045.16590K562GRWD1
chr191113261811132642+CDS3.814125.74979HepG2GRWD1
chr191111406811114073+CDS3.2591118.40895K562ZNF800
chr191113026611130297+CDS,intron-Proximal4.239303.60449K562YWHAG
chr191112365911123718+CDS4.910447.86337HepG2GRWD1
chr191114144411141526+CDS3.2582410.76968K562GRWD1
chr191113230711132417+CDS,intron-Proximal4.095993.25678HepG2SF3B4
chr191114573111145783+CDS3.7389410.61740K562FMR1
chr191110198111101997+CDS3.135986.35635K562UCHL5
chr191114573111145808+CDS3.9638810.28998HepG2GRWD1
chr191117072011170723+CDS,intron-Proximal3.484718.62157K562UCHL5
chr191110180711101861+CDS,intron-Proximal3.8418911.81659K562AQR
chr191110717411107221+CDS,intron-Proximal3.135433.18789HepG2BCLAF1
chr191114416211144190+CDS,intron-Distal3.170273.60157HepG2GRWD1
chr191110183311101869+CDS3.2031314.95676K562ZNF622
chr191111857711118617+CDS,intron-Proximal3.842696.26235K562FMR1
chr191110718111107221+CDS,intron-Proximal4.103429.88739K562FXR2
chr191111405211114073+CDS3.451516.10930K562FXR2
chr191114396611143983+CDS3.425286.02234K562UCHL5
chr191117072011170737+CDS,intron-Proximal3.6024611.03353K562GRWD1
chr191117245911172474+CDS,intron-Distal,intron-Proximal3.3149110.70848K562PUM1
chr191113855711138627+CDS,intron-Proximal3.051555.78112K562YWHAG
chr191116902811169037+CDS3.070145.65791K562ZNF622
chr191110193211101995+CDS3.675154.31749K562TRA2A
chr191111866111118700+CDS,intron-Proximal4.017558.94272HepG2GRWD1
chr191110717411107223+CDS,intron-Proximal3.110915.10448HepG2PPIG
chr191116887611168958+CDS,intron-Proximal3.936606.08339HepG2SF3B4
chr191112365011123697+CDS3.122195.83563K562METAP2
chr191113698011137023+CDS,intron-Proximal4.224667.17313K562FMR1
chr191113026511130322+CDS,intron-Proximal3.489215.59887K562METAP2
chr191109758611097659+CDS3.260707.67040K562FXR2
chr191114149111141524+CDS3.327106.81934HepG2GRWD1
chr191113617411136231+CDS,intron-Proximal3.3848910.07874HepG2PRPF8
chr191111864311118669+CDS3.295249.08072K562GRWD1
chr191111406611114073+CDS4.0774315.67287K562UCHL5
chr191114483011144875+CDS,intron-Distal4.060314.99898K562FXR2
chr191110693511107003+CDS3.474735.12345HepG2GRWD1
chr191110696911107051+CDS3.556637.72705K562TRA2A
chr191111403411114073+CDS3.2659923.12192K562PUM1
chr191110183511101904+CDS3.2096516.13645K562UCHL5
chr191114580011145862+CDS,intron-Proximal4.035333.31384K562XRN2
chr191111370911113801+CDS4.8228712.43287HepG2GRWD1
chr191109855611098596+CDS3.6525510.27359K562UCHL5
chr191110551611105606+CDS3.162258.13987K562DDX24
chr191114146911141494+CDS3.195267.84297K562ZNF800
chr191110717911107219+CDS3.9420512.90299K562UCHL5
chr191111370411113761+CDS,intron-Proximal4.643874.56100HepG2FXR2
chr191109854911098634+CDS,intron-Proximal4.8632113.47152HepG2PRPF8
chr191110182511101858+CDS,intron-Proximal3.064035.39456HepG2GRWD1
chr191112378211123789+CDS,intron-Proximal3.3762616.40670K562YBX3
chr191113502111135090+CDS3.6668410.87798K562YBX3
chr191115219511152235+CDS3.6570115.29655K562ZNF622
chr191109759011097648+CDS4.164516.49839K562FMR1
chr191111864111118699+CDS4.3430829.01948K562UCHL5
chr191110182311101874+CDS,intron-Proximal3.452987.48047K562MTPAP
chr191115198811152015+CDS3.218373.79741HepG2GRWD1
chr191113234111132438+CDS,intron-Proximal3.8816918.53515K562SF3B4
chr191109707011097122+CDS4.244577.39346K562DDX24
chr191110717611107205+CDS3.5563723.44978K562ZNF800
chr191115213911152191+CDS3.6950412.76586K562ZNF622
chr191110693611107007+CDS3.384185.15500HepG2BCLAF1
chr191112374511123782+CDS3.4113218.88035K562YBX3
chr191114140511141413+CDS,intron-Proximal3.258255.12345HepG2GRWD1
chr191114567911145733+CDS,intron-Proximal5.0378113.51514K562FXR2
chr191113258111132618+CDS4.780456.94886HepG2GRWD1
chr191114483311144876+CDS,intron-Distal3.8634312.81756K562UCHL5
chr191117074211170805+CDS4.072313.48757K562TRA2A
chr191112108211121137+CDS5.301789.70099HepG2GRWD1
chr191112963311129654+CDS3.480303.80299HepG2GRWD1
chr191111370411113731+CDS,intron-Proximal3.8397613.36200K562ZNF622
chr191111370411113715+CDS,intron-Proximal3.058566.20531K562GRWD1
chr191109692511096998+CDS4.0348813.76917K562FXR2
chr191109686511096908+CDS3.340459.28523K562PUM1
chr191115209611152180+CDS3.1914523.09824K562PUM1
chr191109685811096894+CDS,intron-Proximal3.220376.62672K562AQR
chr191110003111100075+CDS4.056446.83513K562FMR1
chr191115218011152222+CDS3.0569912.73757K562PUM1
chr191114484711144917+CDS,intron-Distal,intron-Proximal4.286018.47952HepG2PRPF8
chr191110720511107220+CDS3.6000720.25639K562ZNF800
chr191110697011107020+CDS5.263698.89821K562FXR2
chr191116946511169536+CDS3.127124.01344K562YWHAG
chr191113240811132473+CDS3.4351112.56700K562UCHL5
chr191117053411170562+CDS,intron-Proximal3.239303.39217K562YWHAG
chr191115219711152236+CDS3.473497.44807HepG2GRWD1
chr191112963411129658+CDS3.4855523.38547K562YBX3
chr191114155611141587+CDS,intron-Proximal3.001383.49427K562RBM15
chr191117078711170804+CDS3.583083.07411K562LIN28B
chr191110688911107008+CDS3.4612816.34889HepG2BUD13
chr191117080511170863+CDS3.4162215.16338K562PUM1
chr191110011611100162+CDS,intron-Proximal3.426426.18341HepG2PRPF8
chr191111857711118655+CDS,intron-Proximal3.265147.74698K562TRA2A
chr191111372111113827+CDS3.732768.25074K562TRA2A
chr191114403511144087+CDS,intron-Proximal3.9007711.69028K562METAP2
chr191110554111105648+CDS4.481328.02070HepG2FXR2
chr191114147111141524+CDS3.721005.62598K562FXR2
chr191112377011123841+CDS,intron-Proximal3.114144.65130K562PRPF8
chr191111370411113719+CDS,intron-Proximal4.0890610.26568K562UCHL5
chr191110182511101877+CDS,intron-Proximal3.784326.55815K562FMR1
chr191114569111145794+CDS,intron-Proximal3.9007227.20664K562UCHL5
chr191109706411097111+CDS3.204284.89942HepG2GRWD1
chr191116894811169007+CDS3.1901818.59066K562ZNF800
chr191113240411132463+CDS3.200147.26922HepG2GRWD1
chr191117075711170819+CDS3.8356715.30554K562ZNF622
chr191110707011107172+CDS,intron-Proximal4.1044112.47466K562EFTUD2
chr191112963111129634+CDS,intron-Proximal3.8061518.21300K562YBX3
chr191117047311170511+CDS4.016446.03462K562METAP2
chr191114573311145760+CDS4.466928.27565K562FXR2
chr191117072011170752+CDS,intron-Proximal4.7659817.44170K562ZNF622
chr191115216211152234+CDS3.7572118.20134K562UCHL5
chr191114559011145633+CDS,intron-Distal,intron-Proximal3.337605.54854HepG2GRWD1
chr191109484111094916+CDS3.263478.31377HepG2GRWD1
chr191113253811132572+CDS3.156827.44878K562YBX3
chr191116951411169544+CDS3.6825611.89120K562PUM1
chr191112968611129699+CDS3.418714.80598K562METAP2
chr191112364711123712+CDS3.6632417.61495K562YBX3
chr191113026611130377+CDS,intron-Proximal4.055494.86533K562FXR1
chr191111864411118688+CDS4.423584.50566HepG2FXR2
chr191116896311169005+CDS4.7625411.82742K562UCHL5
chr191110003411100075+CDS3.483994.02291HepG2GRWD1
chr191112108411121173+CDS4.6419722.16914K562UCHL5
chr191114156111141616+CDS,intron-Proximal3.959988.47952HepG2PRPF8
chr191112119311121249+CDS,intron-Proximal4.814159.43475HepG2PRPF8
chr191114559011145632+CDS,intron-Distal,intron-Proximal4.2378416.05733K562UCHL5
chr191117052811170556+CDS4.466294.45558HepG2GRWD1
chr191113026711130332+CDS3.549617.44851HepG2GRWD1
chr191113618211136202+CDS,intron-Proximal4.164419.10472K562AQR
chr191112362411123647+CDS,intron-Proximal3.404209.01971K562YBX3
chr191110703411107056+CDS3.0749713.09793K562ZNF800
chr191116900711169039+CDS3.4344914.05992K562ZNF800
chr191113850711138559+CDS4.991317.86337HepG2GRWD1
chr191110716911107176+CDS,intron-Proximal3.9305114.64144K562ZNF800
chr191114392411144009+CDS,intron-Proximal3.334137.63635K562SMNDC1
chr191111370211113812+CDS,intron-Proximal3.0276212.52187HepG2BUD13
chr191113855911138626+CDS3.542298.50585HepG2GRWD1
chr191117085211170862+CDS5.8233614.39302K562UCHL5
chr191111370311113812+CDS,intron-Proximal3.2097635.46514K562ZNF800
chr191113419311134203+CDS,intron-Proximal4.318704.32860K562METAP2
chr191114580711145847+CDS,intron-Proximal4.4516246.16693K562AQR
chr191116946611169516+CDS3.0765112.63543K562ZNF622
chr191113615011136177+CDS3.359804.24070HepG2GRWD1
chr191111857611118658+CDS,intron-Proximal3.498465.34657HepG2TRA2A
chr191110555011105604+CDS3.4765315.30126K562UCHL5
chr191111372011113808+CDS4.2503917.73563K562FXR2
chr191109854011098575+CDS3.959855.29818K562FXR2
chr191111372911113834+CDS4.7159517.28729K562FMR1
chr191113426611134283+CDS3.007523.17744HepG2GRWD1
chr191113246311132531+CDS4.859807.92891HepG2GRWD1
chr191113262411132643+CDS3.721645.32768K562YBX3
chr191115198111152032+CDS,intron-Proximal4.583855.64533K562TRA2A
chr191111857611118613+CDS,intron-Proximal4.224605.91377HepG2FXR2
chr191111857611118615+CDS,intron-Proximal3.4950027.73636K562ZNF800
chr191114146211141491+CDS5.5075212.24186HepG2GRWD1
chr191116949211169533+CDS3.625564.65365HepG2GRWD1
chr191111382011113832+CDS3.810829.30666K562PUM1
chr191112113711121184+CDS3.496155.74981HepG2GRWD1
chr191114789611147968+intron-Distal5.5914112.88487HepG2SUGP2
chr191114924311149369+intron-Distal5.4592511.25274HepG2MATR3
chr191113683711136890+intron-Distal,intron-Proximal4.643395.63851K562SF3B4
chr191114857811148605+intron-Distal3.714505.54651HepG2SUGP2
chr191113682111136887+intron-Distal,intron-Proximal3.990693.53404K562HNRNPM
chr191112892011128979+intron-Distal3.732123.06617K562HNRNPK
chr191108868411088759+intron-Distal4.038894.08332K562NONO
chr191107191411071995+intron-Distal,intron-Proximal3.263573.04054K562GTF2F1
chr191114758611147639+intron-Distal5.034507.39957HepG2SUGP2
chr191114899711149096+intron-Distal4.7733513.15842HepG2SUGP2
chr191112904811129249+intron-Distal,intron-Proximal4.929955.92007HepG2DDX59
chr191114922611149284+intron-Distal4.570985.90588K562MATR3
chr191116351311163641+intron-Distal3.941753.82910K562NONO
chr191113683411136884+intron-Distal,intron-Proximal5.2294110.42871HepG2SF3B4
chr191114770311147759+intron-Distal4.869676.62827HepG2SUGP2
chr191115985811159919+intron-Distal3.355473.02792HepG2RBFOX2
chr191114905011149219+intron-Distal5.698619.99839K562MATR3
chr191107187711071979+intron-Distal,intron-Proximal4.142484.33898HepG2FAM120A
chr191114370311143782+intron-Distal3.004994.24990K562SMNDC1
chr191107306111073108+intron-Distal3.723703.07008K562NONO
chr191114862311148727+intron-Distal4.9247214.34218HepG2SUGP2
chr191115420511154269+intron-Distal4.365913.36882K562SLTM
chr191114809611148145+intron-Distal4.847527.83570HepG2SUGP2
chr191114783711147884+intron-Distal4.728784.78128HepG2SUGP2
chr191114953411149594+intron-Distal3.653197.03905HepG2SUGP2
chr191109623011096298+intron-Distal4.326863.37054HepG2XPO5
chr191114888011148945+intron-Distal4.505924.32882HepG2MATR3
chr191107186211071991+intron-Distal,intron-Proximal4.488373.70058K562CSTF2T
chr191114890611148973+intron-Distal3.729315.33544K562MATR3
chr191114796911148030+intron-Distal3.301866.84019HepG2SUGP2
chr191114833711148400+intron-Distal5.108508.16055HepG2SUGP2
chr191112904511129153+intron-Distal,intron-Proximal4.203584.62179HepG2HNRNPK
chr191107321011073279+intron-Distal3.890583.57189K562ILF3
chr191114912311149209+intron-Distal4.925695.37222HepG2MATR3
chr191114754711147586+intron-Distal3.953777.29258HepG2SUGP2
chr191116117311161248+intron-Distal4.780314.75034HepG2XPO5
chr191109506911095095+intron-Proximal4.385415.63763K562AQR
chr191113265311132671+intron-Proximal4.793559.08030K562AQR
chr191113267111132686+intron-Proximal4.846029.46915K562AQR
chr191113703311137063+intron-Proximal4.455117.92018K562AQR
chr191113430811134349+intron-Proximal3.658405.70278K562AQR
chr191110014611100163+intron-Proximal4.8004510.60410K562AQR
chr191109727411097304+intron-Proximal4.853345.17615K562AQR
chr191116886511168928+intron-Proximal5.361686.90654K562SF3B4
chr191114135911141401+intron-Proximal5.006434.40745K562SF3B4
chr191113702211137033+intron-Proximal4.360596.99120K562AQR
chr191113039211130439+intron-Proximal5.192245.01842HepG2PRPF8
chr191109862411098643+intron-Proximal4.708599.08030K562AQR
chr191113620211136225+intron-Proximal6.0121210.48996K562AQR
chr191110201811102041+intron-Proximal5.9161112.10660K562AQR
chr191109768011097724+intron-Proximal5.7935510.04245K562AQR
chr191111383711113882+intron-Proximal5.210816.22530K562AQR
chr191112970011129755+intron-Proximal5.6882710.48996K562AQR
chr191112355911123620+intron-Proximal4.469438.05832K562SF3B4
chr191110200411102018+intron-Proximal5.8650911.56697K562AQR
chr191114584711145851+intron-Proximal4.9422645.62319K562AQR
chr191113231111132341+intron-Proximal4.626943.82734K562SF3B4
chr191110199911102004+intron-Proximal5.8226411.56697K562AQR
chr191113038711130409+intron-Proximal4.8387723.66679K562AQR
chr191113237711132389+intron-Proximal4.515766.99120K562AQR
chr191113040911130432+intron-Proximal5.6045924.43051K562AQR
chr191110011911100146+intron-Proximal4.158408.29266K562AQR
chr191112120811121249+intron-Proximal3.884255.83621K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMARCA4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCA4 is not available on ENCORE database.

  • 99 RBPs can affect the levels of SMARCA4.  








The Knockdown/knockout RNA-Seq assay for SMARCA4 is not available on ENCORE database.





99 RBPs can affect the gene expression of SMARCA4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCA4ENSG00000127616.133628.961302558.612800.5041014.4978013.33820HepG2ACO1
SMARCA4ENSG00000127616.133247.380301934.759700.747008.510907.63370HepG2AKAP1
SMARCA4ENSG00000127616.131160.435401600.73750-0.464103.250602.39950HepG2ASCC1
SMARCA4ENSG00000127616.131043.900601619.89930-0.633903.977402.91740HepG2BCLAF1
SMARCA4ENSG00000127616.132807.223003681.41170-0.391104.211803.49120HepG2BOP1
SMARCA4ENSG00000127616.131478.257902024.90000-0.454005.751504.69280HepG2CALR
SMARCA4ENSG00000127616.133302.347204384.21440-0.408802.774001.79770HepG2CCAR1
SMARCA4ENSG00000127616.132195.164302557.91550-0.220603.254102.54360HepG2CKAP4
SMARCA4ENSG00000127616.132970.888702276.446600.384006.841905.91770HepG2CELF1
SMARCA4ENSG00000127616.13869.131701520.75360-0.8071013.9218011.95800HepG2DDX24
SMARCA4ENSG00000127616.132030.355601524.270700.413503.606002.06490HepG2DDX52
SMARCA4ENSG00000127616.132523.827803837.90380-0.604703.424602.33980HepG2DDX59
SMARCA4ENSG00000127616.13924.940801266.13420-0.453004.316903.10290HepG2DHX30
SMARCA4ENSG00000127616.131886.482302447.86260-0.375806.378605.43030HepG2DKC1
SMARCA4ENSG00000127616.132478.243501818.285300.446603.854802.78060HepG2EEF2
SMARCA4ENSG00000127616.13729.419901430.96710-0.9722010.939408.89390HepG2AGO1
SMARCA4ENSG00000127616.132206.599301530.275000.527905.151404.35690HepG2EIF2S1
SMARCA4ENSG00000127616.131297.404001690.85780-0.382101.906601.37180HepG2EIF4A3
SMARCA4ENSG00000127616.133222.925601646.814100.9686011.127409.79270HepG2EIF4B
SMARCA4ENSG00000127616.131800.030502414.80890-0.423907.109905.87990HepG2EIF4G1
SMARCA4ENSG00000127616.131688.797202313.18800-0.453904.440403.42390HepG2EIF4G2
SMARCA4ENSG00000127616.131855.864002500.09650-0.429905.231604.08390HepG2EWSR1
SMARCA4ENSG00000127616.134513.877903412.564800.403403.428702.57780HepG2FIP1L1
SMARCA4ENSG00000127616.132171.903303385.57660-0.640402.634801.64450HepG2FTO
SMARCA4ENSG00000127616.133448.290901706.839701.0145018.2889016.68920HepG2FXR1
SMARCA4ENSG00000127616.131875.215103831.02530-1.0307017.5568016.08320HepG2GPKOW
SMARCA4ENSG00000127616.131853.393002442.65710-0.398307.349205.85300HepG2HDGF
SMARCA4ENSG00000127616.131863.074702249.41700-0.271903.174402.18250HepG2HNRNPA2B1
SMARCA4ENSG00000127616.132426.992102925.48620-0.269503.677402.86080HepG2HNRNPF
SMARCA4ENSG00000127616.132642.685801603.860100.7204010.692809.40160HepG2HNRNPK
SMARCA4ENSG00000127616.132304.681403656.02880-0.665709.277708.20170HepG2HNRNPLL
SMARCA4ENSG00000127616.131926.092601464.419900.395203.605002.92150HepG2HNRNPU
SMARCA4ENSG00000127616.132237.639102880.77690-0.364503.531202.72060HepG2IGF2BP1
SMARCA4ENSG00000127616.131860.301702338.80510-0.330206.361404.84780HepG2KIF1C
SMARCA4ENSG00000127616.132895.373401716.859800.753908.906307.82660HepG2MATR3
SMARCA4ENSG00000127616.132082.029403728.93600-0.840807.819306.15920HepG2MTPAP
SMARCA4ENSG00000127616.132308.173201757.191100.393402.947702.29560HepG2NCBP2
SMARCA4ENSG00000127616.131843.512203241.85570-0.8144014.4474012.88170HepG2NSUN2
SMARCA4ENSG00000127616.131784.218801449.527400.299603.785702.81260HepG2PARN
SMARCA4ENSG00000127616.131739.266202396.77070-0.462608.924107.64770HepG2PRPF4
SMARCA4ENSG00000127616.132330.871401657.609500.491704.629103.96160HepG2PTBP1
SMARCA4ENSG00000127616.131822.777302316.77160-0.346003.193902.56000HepG2PUF60
SMARCA4ENSG00000127616.133416.070102459.448400.4739015.7162014.54000HepG2PUM1
SMARCA4ENSG00000127616.131605.968302606.09240-0.6984022.9417021.48730HepG2PUS1
SMARCA4ENSG00000127616.132377.370701794.811000.405402.985602.34090HepG2QKI
SMARCA4ENSG00000127616.131993.172103826.57220-0.9410010.979909.44510HepG2RBM15
SMARCA4ENSG00000127616.132596.960203454.62520-0.411705.824905.14230HepG2RBM22
SMARCA4ENSG00000127616.133670.347401844.596100.9925024.7542023.45740HepG2NELFE
SMARCA4ENSG00000127616.132495.775601718.288300.538403.926003.20880HepG2RECQL
SMARCA4ENSG00000127616.131880.437603151.34340-0.7449012.4848011.21930HepG2RPLP0
SMARCA4ENSG00000127616.132134.877401436.260700.571707.388606.44210HepG2RPS19
SMARCA4ENSG00000127616.131635.057501304.131800.326204.793003.98490HepG2SAFB2
SMARCA4ENSG00000127616.132583.391603618.67720-0.486205.936704.93570HepG2SF3B1
SMARCA4ENSG00000127616.132550.712301725.431200.563805.883905.07600HepG2SF3B4
SMARCA4ENSG00000127616.132480.032001520.840000.7054026.3715024.71530HepG2SMN1
SMARCA4ENSG00000127616.131559.121004026.43770-1.3688018.6999016.72680HepG2SNRNP70
SMARCA4ENSG00000127616.132916.154601801.121200.695108.672707.94140HepG2SRSF1
SMARCA4ENSG00000127616.132914.766802287.585900.349506.501805.59670HepG2SRSF5
SMARCA4ENSG00000127616.132292.919702874.16540-0.326003.169302.42970HepG2SRSF7
SMARCA4ENSG00000127616.132530.542603387.46080-0.420805.727105.04050HepG2SSB
SMARCA4ENSG00000127616.131383.434001017.668600.442902.806401.69720HepG2STIP1
SMARCA4ENSG00000127616.133574.436302601.520000.4583013.4344012.23550HepG2SUCLG1
SMARCA4ENSG00000127616.132483.456103563.81370-0.521106.673705.61380HepG2TARDBP
SMARCA4ENSG00000127616.131967.750501435.677300.454708.382607.48570HepG2TRIM56
SMARCA4ENSG00000127616.132126.012602965.03690-0.4799011.8740010.61050HepG2UPF1
SMARCA4ENSG00000127616.132051.837402862.62080-0.4804011.1313010.05900HepG2UTP3
SMARCA4ENSG00000127616.132215.742001588.674400.479902.666701.63090HepG2XRCC6
SMARCA4ENSG00000127616.131857.634202365.24240-0.348506.606605.64150HepG2ZC3H8
SMARCA4ENSG00000127616.132803.178103260.96760-0.218203.737103.12670HepG2ZNF622
SMARCA4ENSG00000127616.139421.378807658.232900.298805.226104.48650K562AGGF1
SMARCA4ENSG00000127616.134212.152007338.40600-0.8009015.1077013.88760K562AQR
SMARCA4ENSG00000127616.134347.381603839.816600.179002.197401.34020K562BCLAF1
SMARCA4ENSG00000127616.132871.111303893.12110-0.439304.587003.45270K562BOP1
SMARCA4ENSG00000127616.133453.523004139.39490-0.261402.634801.86810K562CPSF6
SMARCA4ENSG00000127616.133579.200102913.073300.297004.092402.77630K562CSTF2
SMARCA4ENSG00000127616.1310959.1274012858.00210-0.230502.901801.90380K562CELF1
SMARCA4ENSG00000127616.134647.186603691.127100.332202.862901.50960K562DHX30
SMARCA4ENSG00000127616.132945.595002007.833100.5528010.642509.07730K562EIF3G
SMARCA4ENSG00000127616.133862.780704724.65290-0.290602.580801.78820K562EIF4A3
SMARCA4ENSG00000127616.135264.295104254.822700.307004.272602.78520K562EIF4B
SMARCA4ENSG00000127616.134929.157304124.151400.257102.553301.31610K562EWSR1
SMARCA4ENSG00000127616.132836.092504211.94880-0.570607.970506.47310K562FMR1
SMARCA4ENSG00000127616.132738.055203570.09890-0.382803.299702.29440K562FTO
SMARCA4ENSG00000127616.13629.981101712.12570-1.442407.193405.93950K562G3BP2
SMARCA4ENSG00000127616.132852.987903952.01550-0.470106.114004.93610K562GPKOW
SMARCA4ENSG00000127616.135363.739807971.89140-0.571708.727207.36470K562GRSF1
SMARCA4ENSG00000127616.133034.157504665.83390-0.6208010.185909.09780K562HNRNPC
SMARCA4ENSG00000127616.133523.634804500.81510-0.353102.764001.83440K562HNRNPM
SMARCA4ENSG00000127616.134437.687207419.39450-0.7415013.7767012.05640K562HSPD1
SMARCA4ENSG00000127616.134416.599403264.559200.435902.491801.37590K562IGF2BP3
SMARCA4ENSG00000127616.131891.253103374.75880-0.835409.490807.65370K562KRR1
SMARCA4ENSG00000127616.1310878.727109473.575400.199402.146501.36150K562MBNL1
SMARCA4ENSG00000127616.138381.8726011145.46370-0.411105.389603.81520K562MSI2
SMARCA4ENSG00000127616.137269.516708672.42910-0.254604.946603.88960K562MTPAP
SMARCA4ENSG00000127616.134629.151406536.40670-0.497705.193204.05140K562PCBP3
SMARCA4ENSG00000127616.133819.866105013.49370-0.392304.476903.45630K562POLR2G
SMARCA4ENSG00000127616.134876.879806211.81580-0.349103.379002.45740K562PPIG
SMARCA4ENSG00000127616.132557.070503663.45710-0.518702.095301.43850K562PRPF8
SMARCA4ENSG00000127616.134404.115703275.847400.426902.811402.14240K562PTBP1
SMARCA4ENSG00000127616.138133.7924011408.73520-0.488106.850205.56450K562PUF60
SMARCA4ENSG00000127616.138605.7937012135.84090-0.4959010.322008.18250K562PUM1
SMARCA4ENSG00000127616.139489.6720011889.84250-0.325306.318704.84750K562PUM2
SMARCA4ENSG00000127616.136924.177109508.22330-0.4575011.201809.64370K562SF3A3
SMARCA4ENSG00000127616.132762.733903758.82730-0.444203.911702.74430K562SF3B1
SMARCA4ENSG00000127616.138363.492709741.40710-0.220004.832003.63750K562SRPK2
SMARCA4ENSG00000127616.134552.026903211.732000.503103.942803.10480K562SRSF1
SMARCA4ENSG00000127616.133793.360102902.318900.386204.775203.33170K562SRSF4
SMARCA4ENSG00000127616.134230.977303034.004700.479702.599901.58760K562SRSF5
SMARCA4ENSG00000127616.135717.155107180.13730-0.328703.187001.71020K562SSRP1
SMARCA4ENSG00000127616.134430.806703249.815700.447102.900302.17600K562TARDBP
SMARCA4ENSG00000127616.135013.315303134.989300.677204.556703.46840K562TIA1
SMARCA4ENSG00000127616.133171.371404023.84730-0.343502.560801.66420K562TIAL1
SMARCA4ENSG00000127616.134682.027003077.935200.605102.766301.67520K562TRA2A
SMARCA4ENSG00000127616.131035.450801657.67280-0.678902.525201.48710K562U2AF1
SMARCA4ENSG00000127616.13796.240501712.64770-1.105006.351505.14190K562U2AF2
SMARCA4ENSG00000127616.137790.2394010216.89570-0.3912011.016609.69980K562UPF1
SMARCA4ENSG00000127616.135071.931606451.48430-0.347102.487901.35340K562UTP3
SMARCA4ENSG00000127616.138032.738209091.10350-0.178602.951002.07710K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCA4 is not available on ENCORE database.





12 RBPs can affect the splicing of SMARCA4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMARCA4ENSG00000127616.13chr19+111501331115022911145589111458081115198211152236-0.060000.000480.01143excludedK562SRSF1
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.079000.000180.09456includedHepG2NKRF
SESMARCA4ENSG00000127616.13chr19+111694631116956511168930111690391117042811170561-0.098000.000090.00262excludedHepG2U2AF1
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.137000.000000.00041includedHepG2PRPF8
SESMARCA4ENSG00000127616.13chr19+1114444211144541111439651114419311144798111448760.098000.000580.05069includedHepG2QKI
SESMARCA4ENSG00000127616.13chr19+111694631116956511168930111690391117042811170561-0.066000.000280.00477excludedHepG2U2AF2
SESMARCA4ENSG00000127616.13chr19+1114444211144541111439651114419311144798111448760.135000.000060.00728includedHepG2NCBP2
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.235000.001980.03936includedK562U2AF1
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.103000.000070.01230includedHepG2SUPV3L1
SESMARCA4ENSG00000127616.13chr19+110914521109152811071676110718501109479611095049-0.095000.000910.03507excludedK562HNRNPU
SESMARCA4ENSG00000127616.13chr19+1114444211144541111439651114419311144798111448760.060000.000810.07622includedK562CPSF6
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.076000.000380.07035includedHepG2DDX55
SESMARCA4ENSG00000127616.13chr19+1115013311150229111455891114580811151982111522360.065000.000210.08197includedK562NCBP2
SESMARCA4ENSG00000127616.13chr19+1114444211144541111439651114419311144798111448760.185000.001370.04957includedHepG2HNRNPC
SESMARCA4ENSG00000127616.13chr19+1114444211144541111439651114419311144798111448760.064000.000040.00118includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCA4 is not avaliable on ENCORE database.