RFX3

General Information

Gene Name       : RFX3
Gene ID             : ENSG00000080298.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RFX3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RFX3ENSG00000080298.153.533.263.39ENCSR000AEF
HepG2RFX3ENSG00000080298.152.272.512.39ENCSR985KAT
K562RFX3ENSG00000080298.151.931.831.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RFX3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RFX3 RNA is bound by 15 proteins.  







eCLIP assay for RFX3 is not avaliable on ENCORE database.





15 proteins are bound to RFX3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr933954893395590-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.554935.27053HepG2PPIG
chr932218543221938-3'-UTR,intron-Distal3.319854.26114HepG2HNRNPL
chr935259263525994-5'-UTR,intron-Distal,intron-Proximal5.877867.79030HepG2PCBP2
chr935257563525857-5'-UTR,intron-Distal5.0487410.86699HepG2PCBP2
chr933302583330489-CDS,intron-Distal,intron-Proximal3.158813.41665HepG2GRWD1
chr935035473503630-intron-Distal4.280995.75916HepG2CSTF2
chr934615003461567-intron-Distal3.465324.09242HepG2QKI
chr935231043523253-intron-Distal5.3898012.87275K562KHSRP
chr935001713500342-intron-Distal4.0949210.46469HepG2QKI
chr934857263485821-intron-Distal4.242494.54401K562KHSRP
chr935006653500743-intron-Distal4.020133.30328HepG2SFPQ
chr934383763438489-intron-Distal5.010167.11021HepG2PTBP1
chr934443513444463-intron-Distal3.415945.69184HepG2PCBP2
chr934383803438421-intron-Distal4.270763.62238HepG2MATR3
chr934599593460000-intron-Distal3.605785.94173HepG2CSTF2
chr935256043525716-intron-Distal4.6165112.94698K562TARDBP
chr934873823487490-intron-Distal4.324855.51743K562QKI
chr935247583524841-intron-Distal3.918233.69425K562TARDBP
chr934991503499219-intron-Distal3.408863.16095HepG2U2AF2
chr934313933431455-intron-Distal3.351345.10681HepG2SUGP2
chr934234523423531-intron-Distal4.978739.40703HepG2CSTF2
chr933056793305828-intron-Distal4.385095.05488HepG2QKI
chr934590673459124-intron-Distal4.353994.86548HepG2SUGP2
chr934322113432279-intron-Distal3.696245.54651HepG2SUGP2
chr934581313458186-intron-Distal4.088734.28663HepG2SUGP2
chr934269573427038-intron-Distal3.901334.29376HepG2CSTF2
chr934666533466716-intron-Distal4.484065.31925HepG2QKI
chr935002453500322-intron-Distal4.428285.63677K562PTBP1
chr934874453487488-intron-Distal4.322328.84799HepG2QKI
chr934320733432128-intron-Distal4.381215.11328HepG2SUGP2
chr935256003525724-intron-Distal3.123223.60227HepG2TIAL1
chr934318393431895-intron-Distal4.486665.04879HepG2SUGP2
chr934845533484599-intron-Distal3.172843.12625HepG2QKI
chr934101623410232-intron-Distal3.860744.88448HepG2HNRNPL
chr934873823487445-intron-Distal6.7280628.45140HepG2QKI
chr935256033525684-intron-Distal4.038934.00200K562EIF4G2
chr934613763461482-intron-Distal5.113458.37182HepG2KHSRP
chr935231103523243-intron-Distal4.447167.70322HepG2KHSRP
chr935002213500336-intron-Distal4.2598910.00695HepG2PTBP1
chr934328053432886-intron-Distal4.770024.78128HepG2SUGP2
chr935072213507331-intron-Distal3.557074.81278HepG2PTBP1
chr934821003482180-intron-Distal3.139863.10946HepG2SFPQ
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RFX3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RFX3 is not available on ENCORE database.

  • 105 RBPs can affect the levels of RFX3.  








The Knockdown/knockout RNA-Seq assay for RFX3 is not available on ENCORE database.





105 RBPs can affect the gene expression of RFX3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RFX3ENSG00000080298.11281.64250488.15370-0.793505.814904.50360HepG2ABCF1
RFX3ENSG00000080298.11447.69450768.81730-0.780106.203505.44330HepG2AKAP1
RFX3ENSG00000080298.11323.67080423.85920-0.389102.580101.83690HepG2AKAP8L
RFX3ENSG00000080298.11324.53540604.38170-0.897108.383607.09420HepG2CIRBP
RFX3ENSG00000080298.11266.34100421.78850-0.663206.580905.63550HepG2CKAP4
RFX3ENSG00000080298.11385.38370672.17040-0.802504.979103.94820HepG2CNOT7
RFX3ENSG00000080298.11314.95810443.09560-0.492503.531602.38010HepG2YBX3
RFX3ENSG00000080298.11318.69990585.72930-0.8780011.3221010.19550HepG2CELF1
RFX3ENSG00000080298.11283.88590390.17050-0.458803.629802.69250HepG2DDX19B
RFX3ENSG00000080298.11324.80330443.70530-0.450002.951801.76010HepG2DDX1
RFX3ENSG00000080298.11155.28380367.74890-1.2438012.2574010.94550HepG2DDX21
RFX3ENSG00000080298.11265.72080736.51240-1.4708020.6346019.09110HepG2DDX3X
RFX3ENSG00000080298.11544.02190289.250200.911204.263703.06450HepG2DDX59
RFX3ENSG00000080298.11281.57920431.25030-0.615006.171205.25390HepG2DNAJC2
RFX3ENSG00000080298.11239.57640401.63980-0.745404.013602.92470HepG2EEF2
RFX3ENSG00000080298.11236.55740334.87540-0.501402.421601.38610HepG2EFTUD2
RFX3ENSG00000080298.11508.31910338.741200.585503.361202.13180HepG2AGO1
RFX3ENSG00000080298.11418.83430608.21320-0.538203.503202.84080HepG2EIF2S1
RFX3ENSG00000080298.11207.11720326.07130-0.654702.557901.68450HepG2EIF3D
RFX3ENSG00000080298.11342.99840672.19630-0.970708.776607.64180HepG2EIF4A3
RFX3ENSG00000080298.11436.53250654.38350-0.584002.412601.76900HepG2EIF4B
RFX3ENSG00000080298.11789.57240621.358700.345502.727501.89510HepG2EIF4G1
RFX3ENSG00000080298.11269.79410412.25070-0.611704.393503.34550HepG2EWSR1
RFX3ENSG00000080298.11198.67840291.36880-0.552403.086901.84090HepG2FAM120A
RFX3ENSG00000080298.11198.19650492.91320-1.3144012.4202010.96070HepG2FIP1L1
RFX3ENSG00000080298.11382.23110678.06890-0.827007.684206.57390HepG2FXR1
RFX3ENSG00000080298.11173.39260290.33310-0.743704.097002.99420HepG2GEMIN5
RFX3ENSG00000080298.11429.86280622.15520-0.533402.747601.63930HepG2GRSF1
RFX3ENSG00000080298.11167.42570439.24290-1.3915015.8102014.47250HepG2HNRNPA1
RFX3ENSG00000080298.11290.10650488.58240-0.752005.930704.94380HepG2HNRNPC
RFX3ENSG00000080298.11307.30290582.20230-0.921906.869004.56130HepG2HNRNPD
RFX3ENSG00000080298.11424.26740636.82440-0.585904.364403.50380HepG2HNRNPK
RFX3ENSG00000080298.11225.54560340.07550-0.592403.645602.56570HepG2HNRNPM
RFX3ENSG00000080298.11282.59240485.35170-0.780309.195608.13970HepG2HNRNPU
RFX3ENSG00000080298.11308.97280639.48080-1.0494011.243809.98090HepG2IGF2BP2
RFX3ENSG00000080298.11349.82230495.76970-0.503005.322104.33110HepG2ILF2
RFX3ENSG00000080298.11405.31540640.06040-0.659204.579702.99100HepG2KHDRBS1
RFX3ENSG00000080298.11447.35250725.64050-0.697804.915903.79870HepG2LARP4
RFX3ENSG00000080298.11302.23250678.30500-1.1663013.4952012.09260HepG2MAGOH
RFX3ENSG00000080298.11380.11840682.12560-0.843607.079106.10550HepG2MATR3
RFX3ENSG00000080298.11224.91180398.91040-0.826706.738605.53040HepG2MSI2
RFX3ENSG00000080298.11202.97850698.21320-1.7823023.7531022.02130HepG2NCBP2
RFX3ENSG00000080298.11351.95290555.45240-0.658303.800102.13080HepG2NKRF
RFX3ENSG00000080298.11425.34980244.331100.799705.819004.75790HepG2NSUN2
RFX3ENSG00000080298.11427.38140579.20450-0.438502.988701.31710HepG2NUP35
RFX3ENSG00000080298.11282.31170621.89490-1.1394012.6702011.15610HepG2PABPC4
RFX3ENSG00000080298.11351.90860480.40780-0.449103.449102.51360HepG2PARN
RFX3ENSG00000080298.11315.92070574.09770-0.8617011.6885010.58000HepG2PCBP1
RFX3ENSG00000080298.11159.61250269.64760-0.756503.616102.20600HepG2PKM
RFX3ENSG00000080298.11347.37700569.21890-0.712504.999502.57120HepG2PPIG
RFX3ENSG00000080298.11396.02890286.677200.466103.260102.42660HepG2PRPF4
RFX3ENSG00000080298.11298.22550584.15690-0.9700013.8074012.76890HepG2PTBP1
RFX3ENSG00000080298.11479.52840596.24730-0.314302.013901.49380HepG2PUF60
RFX3ENSG00000080298.11345.64080632.89200-0.8727011.4354010.40100HepG2PUM1
RFX3ENSG00000080298.11487.36930632.46130-0.376002.290601.67820HepG2PUM2
RFX3ENSG00000080298.11216.61890429.69690-0.9882012.6193011.46650HepG2PUS1
RFX3ENSG00000080298.11188.09760447.07270-1.249004.374803.03900HepG2RCC2
RFX3ENSG00000080298.11520.80150650.11800-0.320002.292301.79030HepG2NELFE
RFX3ENSG00000080298.11147.53110317.25440-1.104609.108208.06800HepG2RPS19
RFX3ENSG00000080298.11229.75730507.82130-1.144204.062903.10190HepG2RPS2
RFX3ENSG00000080298.11419.83040674.55460-0.684104.306803.30850HepG2RPS3A
RFX3ENSG00000080298.11300.45600518.30810-0.786702.299101.32550HepG2RPS5
RFX3ENSG00000080298.11232.23990432.22370-0.8962010.475009.34540HepG2SAFB2
RFX3ENSG00000080298.11114.61780318.45750-1.4743013.4707011.48210HepG2SERBP1
RFX3ENSG00000080298.11305.36330490.14940-0.682703.977403.16200HepG2SF3A3
RFX3ENSG00000080298.11379.47780608.19890-0.680507.693206.78520HepG2SF3B4
RFX3ENSG00000080298.11303.52270504.04010-0.731708.945807.89400HepG2SMN1
RFX3ENSG00000080298.11269.35150452.53520-0.748504.744903.45880HepG2SMNDC1
RFX3ENSG00000080298.11518.98050303.492500.773904.329903.34360HepG2SNRNP70
RFX3ENSG00000080298.11252.75630634.82140-1.3286023.7321022.64400HepG2SRSF1
RFX3ENSG00000080298.11417.62610293.471400.508902.300001.39730HepG2SRSF3
RFX3ENSG00000080298.11363.71730588.64640-0.694607.734006.75610HepG2SRSF5
RFX3ENSG00000080298.11628.84700516.455300.284002.116701.62080HepG2SRSF9
RFX3ENSG00000080298.11329.09610527.76520-0.681407.428606.66700HepG2SSB
RFX3ENSG00000080298.11509.39980669.50530-0.394303.024302.37950HepG2SUCLG1
RFX3ENSG00000080298.11230.51330332.82030-0.529903.198302.19230HepG2SUPT6H
RFX3ENSG00000080298.11198.03570471.58800-1.2518016.5493015.51140HepG2TIAL1
RFX3ENSG00000080298.11294.79810475.82720-0.690707.357206.51420HepG2TRIM56
RFX3ENSG00000080298.11178.42610421.64310-1.2407011.6811010.36190HepG2U2AF1
RFX3ENSG00000080298.11410.46550616.43340-0.586702.819501.97500HepG2UBE2L3
RFX3ENSG00000080298.11262.76260419.67360-0.675505.941705.11940HepG2UTP3
RFX3ENSG00000080298.11427.73280282.928300.596203.420902.68660HepG2ZC3H8
RFX3ENSG00000080298.11229.32190478.07300-1.0599016.0034014.95990HepG2ZNF622
RFX3ENSG00000080298.11622.06870443.729000.487302.565001.32150HepG2ZRANB2
RFX3ENSG00000080298.11149.77510350.63860-1.2272011.9093010.82330K562AGGF1
RFX3ENSG00000080298.11158.14890364.84250-1.2060011.8458010.36410K562AKAP8L
RFX3ENSG00000080298.11360.88110251.313800.521902.480101.91820K562AQR
RFX3ENSG00000080298.11235.72280382.78340-0.699405.782704.40300K562ATP5C1
RFX3ENSG00000080298.11239.49090173.348000.466201.972101.30140K562CPSF6
RFX3ENSG00000080298.11270.78760411.39410-0.603404.312202.45650K562DDX19B
RFX3ENSG00000080298.1181.33090153.65820-0.917804.320702.97500K562DDX3X
RFX3ENSG00000080298.11342.60260251.872900.443702.784202.13040K562DDX47
RFX3ENSG00000080298.11270.93760392.67720-0.535403.795202.74680K562DKC1
RFX3ENSG00000080298.11348.67490187.334500.896208.233007.09190K562EIF2S2
RFX3ENSG00000080298.1161.59390171.83070-1.480108.897607.28130K562FIP1L1
RFX3ENSG00000080298.11250.70230125.731000.995506.905504.67110K562FUS
RFX3ENSG00000080298.11113.40350166.94740-0.557902.134201.59040K562FXR1
RFX3ENSG00000080298.11148.77070249.66660-0.746903.646402.78260K562GRSF1
RFX3ENSG00000080298.11337.82800232.978200.536002.728401.93850K562HSPD1
RFX3ENSG00000080298.11271.81530387.23410-0.510603.480602.54370K562KIF1C
RFX3ENSG00000080298.11137.34020252.87820-0.880706.055004.79410K562MAGOH
RFX3ENSG00000080298.11136.08080252.36090-0.891006.066904.62700K562MATR3
RFX3ENSG00000080298.11297.94520433.79370-0.542003.914502.80220K562MBNL1
RFX3ENSG00000080298.11178.21610304.05400-0.770703.777602.70530K562NAA15
RFX3ENSG00000080298.1198.90100160.30440-0.696802.787501.55380K562NCBP2
RFX3ENSG00000080298.1183.84680147.04200-0.810403.071201.68780K562NONO
RFX3ENSG00000080298.11260.78420181.562300.522302.863802.10620K562NSUN2
RFX3ENSG00000080298.11148.98380224.99380-0.594702.653001.69460K562PCBP2
RFX3ENSG00000080298.11273.16540186.028200.554202.387101.61600K562PCBP3
RFX3ENSG00000080298.1186.30400145.17320-0.750302.519501.80370K562PRPF8
RFX3ENSG00000080298.11140.56920245.68920-0.805605.299604.40590K562PTBP1
RFX3ENSG00000080298.11271.24290361.91550-0.416101.900501.43440K562PUS1
RFX3ENSG00000080298.11203.85960352.55600-0.790306.436305.55800K562RBM15
RFX3ENSG00000080298.1170.95480167.38140-1.238207.019204.79790K562RBM25
RFX3ENSG00000080298.11121.70900183.50060-0.592302.663201.82620K562SF3B4
RFX3ENSG00000080298.11169.87680240.86050-0.503702.168301.53390K562SRSF1
RFX3ENSG00000080298.11150.61120227.48250-0.594902.791701.73760K562SRSF5
RFX3ENSG00000080298.11164.64670235.13550-0.514102.351201.60400K562TIA1
RFX3ENSG00000080298.11145.56810230.75420-0.664703.149901.97220K562TRA2A
RFX3ENSG00000080298.1195.31910151.48940-0.668402.428801.32120K562XRN2
RFX3ENSG00000080298.11420.66680283.089100.571303.962202.89660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RFX3 is not available on ENCORE database.





1 RBPs can affect the splicing of RFX3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERFX3ENSG00000080298.11chr9-330154533016203293076329325833302583330517-0.556000.000730.01750excludedK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RFX3 is not avaliable on ENCORE database.