RABEP1

General Information

Gene Name       : RABEP1
Gene ID             : ENSG00000029725.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RABEP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RABEP1ENSG00000029725.1655.2446.8351.03ENCSR000AEF
HepG2RABEP1ENSG00000029725.1619.7627.4223.59ENCSR985KAT
K562RABEP1ENSG00000029725.1619.1021.0320.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RABEP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RABEP1 RNA is bound by 18 proteins.  







eCLIP assay for RABEP1 is not avaliable on ENCORE database.





18 proteins are bound to RABEP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1752882975288369+3'-UTR3.786453.95400K562UPF1
chr1752866525286708+3'-UTR4.074493.32022K562UCHL5
chr1751855745185657+5'-UTR3.059693.41568HepG2NCBP2
chr1751855805185686+5'-UTR3.367413.60157HepG2GRWD1
chr1752500845250138+CDS,intron-Proximal3.202103.07653K562ZNF622
chr1752353785235449+CDS,intron-Proximal3.764967.23562HepG2BCLAF1
chr1752804205280513+CDS3.346595.40132HepG2BCLAF1
chr1752413155241418+CDS4.3315911.55000HepG2BCLAF1
chr1752646155264663+CDS3.477444.26492HepG2BCLAF1
chr1752352665235311+CDS4.067323.12746HepG2GRWD1
chr1752645135264587+CDS3.913638.19556HepG2BCLAF1
chr1752577275257784+CDS4.165306.23296HepG2BCLAF1
chr1752660595266209+CDS,intron-Distal,intron-Proximal3.749743.25538K562KHSRP
chr1752538755253925+CDS,intron-Proximal4.104863.29312HepG2FXR2
chr1752413215241421+CDS3.780455.97027HepG2GRWD1
chr1752717065271757+CDS3.302113.36945K562ZNF622
chr1752413135241427+CDS,intron-Proximal3.102785.46976K562UCHL5
chr1752353885235445+CDS3.482364.06757K562UCHL5
chr1752645025264571+CDS,intron-Proximal4.934836.23323K562UCHL5
chr1752645715264655+CDS4.955746.23323K562UCHL5
chr1752645845264691+CDS4.715046.26332HepG2GRWD1
chr1752500885250153+CDS4.130115.36555HepG2BCLAF1
chr1752804525280542+CDS4.312383.29312HepG2FXR2
chr1752566955256748+intron-Distal4.569824.45977HepG2U2AF2
chr1751924285192505+intron-Distal4.862384.40618K562PTBP1
chr1751858645186006+intron-Distal,intron-Proximal4.151517.82628HepG2CSTF2T
chr1751858805185962+intron-Distal,intron-Proximal4.501666.28577HepG2FAM120A
chr1752822535282314+intron-Distal4.035273.54208HepG2SUGP2
chr1751860785186165+intron-Distal5.348549.73136K562GTF2F1
chr1751924275192571+intron-Distal4.833345.41368HepG2PTBP1
chr1751860365186151+intron-Distal5.151729.59190HepG2PRPF4
chr1751860675186171+intron-Distal4.232453.67126HepG2NKRF
chr1751860795186171+intron-Distal4.284853.57264HepG2GTF2F1
chr1751860555186175+intron-Distal5.0370814.64860HepG2FAM120A
chr1751860885186160+intron-Distal4.163784.85687K562DROSHA
chr1752388175238993+intron-Distal3.066483.33412HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RABEP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RABEP1 is not available on ENCORE database.

  • 95 RBPs can affect the levels of RABEP1.  








The Knockdown/knockout RNA-Seq assay for RABEP1 is not available on ENCORE database.





95 RBPs can affect the gene expression of RABEP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RABEP1ENSG00000029725.12652.63020886.12630-0.441202.396001.52550HepG2BCCIP
RABEP1ENSG00000029725.121602.708201382.525300.213102.505301.79430HepG2DAZAP1
RABEP1ENSG00000029725.12672.13870884.33110-0.395803.615602.29330HepG2DDX1
RABEP1ENSG00000029725.12790.79530967.11240-0.290401.898701.32410HepG2DDX21
RABEP1ENSG00000029725.12910.444601268.79890-0.478803.696502.98340HepG2DDX3X
RABEP1ENSG00000029725.121378.924701089.817700.339401.973501.44430HepG2DDX6
RABEP1ENSG00000029725.12836.454501027.58540-0.296902.751402.07540HepG2DKC1
RABEP1ENSG00000029725.12708.51860867.12260-0.291402.315701.66630HepG2DNAJC21
RABEP1ENSG00000029725.12619.73870859.53390-0.471906.608105.66040HepG2DNAJC2
RABEP1ENSG00000029725.12569.11200788.15570-0.469802.924301.99830HepG2EIF3D
RABEP1ENSG00000029725.121146.66630913.106900.328502.676501.61250HepG2EIF3G
RABEP1ENSG00000029725.121848.997501127.343500.713705.961804.97940HepG2EIF4B
RABEP1ENSG00000029725.121603.503601364.005800.233302.409601.61930HepG2EIF4G1
RABEP1ENSG00000029725.12972.27140712.137300.449103.196102.35520HepG2FUBP3
RABEP1ENSG00000029725.12521.99820701.75390-0.426902.878901.96190HepG2GEMIN5
RABEP1ENSG00000029725.12781.04400973.77740-0.318202.086001.47370HepG2HNRNPC
RABEP1ENSG00000029725.121135.479301355.44570-0.255502.408501.73640HepG2HNRNPF
RABEP1ENSG00000029725.121078.377201259.35370-0.223802.165701.55920HepG2HNRNPL
RABEP1ENSG00000029725.121351.230501695.41630-0.327402.304401.72440HepG2HNRNPLL
RABEP1ENSG00000029725.121051.819201334.73270-0.343703.109502.34520HepG2IGF2BP1
RABEP1ENSG00000029725.122594.518301984.340600.386702.460701.67930HepG2LARP4
RABEP1ENSG00000029725.12928.826401175.15580-0.339401.900401.37220HepG2MATR3
RABEP1ENSG00000029725.12887.904901137.47550-0.357402.719201.91660HepG2MSI2
RABEP1ENSG00000029725.12967.235301370.91290-0.503206.594905.42260HepG2NOL12
RABEP1ENSG00000029725.121360.382701071.317600.344502.257601.59990HepG2PABPC4
RABEP1ENSG00000029725.121583.459001140.335900.473507.757706.54440HepG2PRPF4
RABEP1ENSG00000029725.121042.422601308.67560-0.328202.558001.98230HepG2PUF60
RABEP1ENSG00000029725.121590.022701389.239300.194702.278501.72980HepG2PUM1
RABEP1ENSG00000029725.121991.481701215.883100.7117013.8925012.64770HepG2QKI
RABEP1ENSG00000029725.12968.183301602.11290-0.7266012.4077010.79760HepG2RBM15
RABEP1ENSG00000029725.12736.951401656.11220-1.1682034.0406032.61340HepG2RBM22
RABEP1ENSG00000029725.121484.437001103.460000.427804.327403.49910HepG2RBM25
RABEP1ENSG00000029725.121465.732201249.373700.230301.998401.52260HepG2NELFE
RABEP1ENSG00000029725.121374.966701163.561900.240702.192201.63530HepG2RECQL
RABEP1ENSG00000029725.121174.020201460.06270-0.314602.388501.74640HepG2RPLP0
RABEP1ENSG00000029725.121354.04590993.933900.446002.318801.45310HepG2RPS10
RABEP1ENSG00000029725.12906.30090664.925800.446702.927802.12180HepG2RRP9
RABEP1ENSG00000029725.122281.154401678.111000.442804.489003.60720HepG2SF3B1
RABEP1ENSG00000029725.121376.778901168.837900.236102.066301.54410HepG2SF3B4
RABEP1ENSG00000029725.121592.920801870.49210-0.231702.735702.23570HepG2SRFBP1
RABEP1ENSG00000029725.121915.135301219.984500.6505015.0695014.15470HepG2SRSF1
RABEP1ENSG00000029725.121585.232601292.153400.294803.599302.90250HepG2SRSF5
RABEP1ENSG00000029725.121061.612301331.66110-0.327003.601202.82280HepG2SRSF7
RABEP1ENSG00000029725.121431.69150992.497300.528509.631008.70890HepG2SRSF9
RABEP1ENSG00000029725.121867.211601623.985000.201202.081201.62020HepG2SSB
RABEP1ENSG00000029725.121756.825401469.511400.257503.440502.76120HepG2SUCLG1
RABEP1ENSG00000029725.121677.634901096.488900.6134010.784509.79320HepG2TAF15
RABEP1ENSG00000029725.121292.863201652.58020-0.354202.866802.13050HepG2TARDBP
RABEP1ENSG00000029725.121357.389501007.609600.429804.598703.52770HepG2TIA1
RABEP1ENSG00000029725.121823.650601202.168000.601106.971605.98410HepG2U2AF1
RABEP1ENSG00000029725.121715.920601353.356800.342302.144301.41240HepG2UBE2L3
RABEP1ENSG00000029725.12733.72720512.371200.518003.986003.07500HepG2UCHL5
RABEP1ENSG00000029725.121200.321101491.99500-0.313804.671004.00760HepG2ZNF622
RABEP1ENSG00000029725.121045.983001432.22570-0.453406.715905.88810K562AGGF1
RABEP1ENSG00000029725.121114.945401490.28910-0.418603.901903.12430K562AKAP8L
RABEP1ENSG00000029725.122949.559602410.343400.291202.633901.42600K562APOBEC3C
RABEP1ENSG00000029725.121320.855902155.96870-0.7069010.160609.14420K562AQR
RABEP1ENSG00000029725.12855.633901230.70050-0.524407.264605.01640K562BCCIP
RABEP1ENSG00000029725.121245.980001734.79530-0.477504.543303.41390K562BOP1
RABEP1ENSG00000029725.12982.760801357.37610-0.465904.469602.83130K562CIRBP
RABEP1ENSG00000029725.121838.614902395.88170-0.381902.776101.34330K562CKAP4
RABEP1ENSG00000029725.121966.024802321.95580-0.240102.427301.39690K562CPEB4
RABEP1ENSG00000029725.121327.013401844.60630-0.475105.968904.82160K562CPSF6
RABEP1ENSG00000029725.12591.03030870.61940-0.558805.947904.35050K562DDX3X
RABEP1ENSG00000029725.12705.14630882.67050-0.324002.832801.50410K562DDX6
RABEP1ENSG00000029725.12750.879901097.16150-0.547104.851203.62710K562EFTUD2
RABEP1ENSG00000029725.121220.981301813.20570-0.5705010.572809.30580K562EIF2S2
RABEP1ENSG00000029725.12766.902301174.84980-0.615404.881903.46070K562EIF3D
RABEP1ENSG00000029725.12588.88510793.91860-0.431003.989002.39300K562EWSR1
RABEP1ENSG00000029725.121435.896902046.79400-0.511402.491701.68810K562FIP1L1
RABEP1ENSG00000029725.121064.028101876.80230-0.8187011.222109.43560K562FMR1
RABEP1ENSG00000029725.121110.708901590.74150-0.518204.898003.64580K562FTO
RABEP1ENSG00000029725.121238.39060945.883900.388604.381603.64420K562FXR1
RABEP1ENSG00000029725.121145.995801761.16190-0.619908.305106.92320K562GPKOW
RABEP1ENSG00000029725.121854.604002416.31860-0.381704.097903.18030K562GRSF1
RABEP1ENSG00000029725.121127.674201380.25740-0.291602.419901.41890K562HNRNPA1
RABEP1ENSG00000029725.12652.193401074.32040-0.720104.359203.62630K562HNRNPC
RABEP1ENSG00000029725.121710.212502171.47590-0.344503.418302.22780K562HNRNPL
RABEP1ENSG00000029725.121214.866601528.47660-0.331303.535002.52450K562HNRNPU
RABEP1ENSG00000029725.121948.965202775.26630-0.509902.434101.68380K562HSPD1
RABEP1ENSG00000029725.12963.183101266.34380-0.394802.457301.50750K562IGF2BP2
RABEP1ENSG00000029725.121003.942501503.76840-0.582904.260903.07560K562KRR1
RABEP1ENSG00000029725.121162.983101719.08340-0.563807.254405.79850K562METAP2
RABEP1ENSG00000029725.122170.512302911.64040-0.423804.041502.67610K562MSI2
RABEP1ENSG00000029725.121629.345501940.19150-0.251903.939903.06820K562NSUN2
RABEP1ENSG00000029725.12886.034901404.19420-0.664303.011201.96940K562PABPN1
RABEP1ENSG00000029725.12986.577601301.00390-0.399104.048502.40030K562PCBP1
RABEP1ENSG00000029725.121579.033602323.26090-0.557102.948302.09740K562PPIG
RABEP1ENSG00000029725.121608.474101293.163700.314702.896702.22000K562PTBP1
RABEP1ENSG00000029725.122472.113303106.10290-0.329404.139002.95690K562PUM2
RABEP1ENSG00000029725.121096.414001478.00510-0.430903.804903.18200K562PUS1
RABEP1ENSG00000029725.121101.930401440.05420-0.386104.186403.47300K562RBM15
RABEP1ENSG00000029725.12952.623301240.07050-0.380403.123902.22560K562RBM22
RABEP1ENSG00000029725.12842.990001087.62190-0.367602.011501.32030K562RPS19
RABEP1ENSG00000029725.121480.552601914.37480-0.370704.908303.84820K562SF3A3
RABEP1ENSG00000029725.121003.780501566.07850-0.641702.533601.30650K562SFPQ
RABEP1ENSG00000029725.12897.467201197.22010-0.415803.472302.27330K562SRSF5
RABEP1ENSG00000029725.121533.907001116.163600.458605.601104.42540K562SYNCRIP
RABEP1ENSG00000029725.12938.292901283.04610-0.451503.874503.03100K562TARDBP
RABEP1ENSG00000029725.121014.499801237.63340-0.286802.212001.48660K562TIA1
RABEP1ENSG00000029725.12663.88330926.44970-0.480802.411201.54120K562TIAL1
RABEP1ENSG00000029725.121616.739302057.22090-0.347605.621904.63740K562UPF1
RABEP1ENSG00000029725.121108.748501465.07600-0.402004.105702.03920K562UPF2
RABEP1ENSG00000029725.121497.039901987.56540-0.408903.204101.90480K562UTP3
RABEP1ENSG00000029725.121334.625101760.30760-0.399404.271803.17490K562WDR3
RABEP1ENSG00000029725.121436.13470917.786200.645903.230701.49470K562XRCC6
RABEP1ENSG00000029725.121788.812402428.87010-0.441305.012003.79530K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RABEP1 is not available on ENCORE database.





13 RBPs can affect the splicing of RABEP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERABEP1ENSG00000029725.12chr17+5259802525986852576955257785526450252649240.164000.000000.00000includedHepG2U2AF1
SERABEP1ENSG00000029725.12chr17+5252784525290652500845250220525374552539240.080000.000010.00331includedK562FMR1
SERABEP1ENSG00000029725.12chr17+5252781525290652500845250220525374552539240.081000.000000.00062includedHepG2DDX59
SERABEP1ENSG00000029725.12chr17+528365852837575281471528152752846835284800-0.337000.009280.08603excludedHepG2U2AF2
SERABEP1ENSG00000029725.12chr17+5252781525296752500845250220525374552539240.052000.004970.04634includedK562AQR
SERABEP1ENSG00000029725.12chr17+525374552539245250084525022052576535257785-0.057000.001820.02029excludedK562AQR
SERABEP1ENSG00000029725.12chr17+525980252598685257695525778552645025264924-0.136000.000050.02080excludedHepG2BCLAF1
SERABEP1ENSG00000029725.12chr17+5259802525986852576955257785526450252649240.121000.000260.02116includedHepG2NCBP2
SERABEP1ENSG00000029725.12chr17+5253745525392452500845250220525765352577850.051000.000950.04395includedHepG2SFPQ
SERABEP1ENSG00000029725.12chr17+5252781525290652500845250220525374552539240.085000.000000.00000includedK562HNRNPL
SERABEP1ENSG00000029725.12chr17+5252781525290652500845250220525374552539240.066000.000260.01023includedHepG2SF3A3
SERABEP1ENSG00000029725.12chr17+525374552539245250084525022052576535257785-0.177000.004930.06861excludedK562HNRNPC
A3SSRABEP1ENSG00000029725.12chr17+5286393528651852864165286518528460352848000.128000.000000.00000longerK562AQR
A3SSRABEP1ENSG00000029725.12chr17+5276590527678552766085276785527166452717630.136000.000000.00000longerK562AQR
A3SSRABEP1ENSG00000029725.12chr17+5253710525392452537455253924525008452502200.098000.000030.00025longerK562AQR
MXERABEP1ENSG00000029725.12chr17+527659052767495280410528060052716645271763528147152815270.166000.000000.000031includedK562AQR
MXERABEP1ENSG00000029725.12chr17+528365852837575284683528480052814715281527528641652869120.228000.000320.016341includedHepG2RBFOX2
MXERABEP1ENSG00000029725.12chr17+523847852386395241313524143352352435235447525008452502200.068000.002760.045461includedK562HNRNPC
MXERABEP1ENSG00000029725.12chr17+523847852386395241313524143352352435235447525008452502200.144000.000800.019651includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RABEP1 is not avaliable on ENCORE database.