PRR13

General Information

Gene Name       : PRR13
Gene ID             : ENSG00000205352.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PRR13)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRR13ENSG00000205352.10170.82253.28212.05ENCSR000AEF
HepG2PRR13ENSG00000205352.10119.04122.87120.96ENCSR985KAT
K562PRR13ENSG00000205352.10380.54428.68404.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRR13 is not avaliable on ENCORE database.



Proteins bound to RNA

  • PRR13 RNA is bound by 14 proteins.  







eCLIP assay for PRR13 is not avaliable on ENCORE database.





14 proteins are bound to PRR13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125383994853840048+3'-UTR,intron-Distal3.305237.65028K562YBX3
chr125383997253840051+3'-UTR,intron-Distal4.843636.19943K562RBM15
chr125383646653836511+3'-UTR,5'-UTR,CDS,intron-Proximal3.299634.28417K562U2AF2
chr125384034553840401+3'-UTR,intron-Distal3.283344.51776K562FAM120A
chr125384015753840255+3'-UTR,intron-Distal4.3786611.39836K562UPF1
chr125383976653839828+3'-UTR,CDS,intron-Distal,intron-Proximal3.188275.28960K562AQR
chr125383643753836563+3'-UTR,5'-UTR,CDS,intron-Proximal3.419228.61034K562BUD13
chr125383647153836508+3'-UTR,5'-UTR,CDS,intron-Proximal4.319507.13970HepG2PRPF8
chr125383761253837686+3'-UTR,intron-Distal,intron-Proximal3.630955.32296K562PRPF8
chr125383644453836556+3'-UTR,5'-UTR,CDS,intron-Proximal5.380248.88638HepG2AQR
chr125383646753836501+3'-UTR,5'-UTR,CDS,intron-Proximal3.238933.46866HepG2U2AF2
chr125383644753836513+3'-UTR,5'-UTR,CDS,intron-Proximal3.7062211.02376K562AQR
chr125384019053840242+3'-UTR,intron-Distal3.073525.83339K562DDX55
chr125383762453837663+3'-UTR,intron-Distal,intron-Proximal5.050813.92230K562EFTUD2
chr125383642253836553+3'-UTR,5'-UTR,CDS,intron-Proximal4.541637.82456K562SF3B4
chr125383649253836517+3'-UTR,5'-UTR,CDS3.154904.00731K562UCHL5
chr125383557653835626+5'-UTR,CDS,intron-Proximal6.5273118.58475K562AQR
chr125383741453837519+5'-UTR,CDS,intron-Proximal3.1500816.60216K562UCHL5
chr125383754053837603+5'-UTR,CDS,intron-Proximal3.780705.43815HepG2PRPF8
chr125383716253837204+5'-UTR,CDS,intron-Distal,intron-Proximal4.321389.47387HepG2U2AF2
chr125383755953837598+CDS,intron-Proximal4.399597.53394K562AQR
chr125383714853837199+5'-UTR,CDS,intron-Distal,intron-Proximal4.342335.47926K562AQR
chr125383651453836570+5'-UTR,CDS,intron-Proximal5.0231619.12147K562AQR
chr125383712153837189+5'-UTR,CDS,intron-Distal,intron-Proximal3.581674.77481HepG2BUD13
chr125383711753837191+5'-UTR,CDS,intron-Distal,intron-Proximal4.376004.27476HepG2AQR
chr125383716053837206+5'-UTR,CDS,intron-Distal,intron-Proximal3.321645.83808K562U2AF2
chr125383716353837191+5'-UTR,CDS,intron-Distal,intron-Proximal3.002463.98324K562BUD13
chr125383650853836565+5'-UTR,CDS,intron-Proximal3.683718.45537HepG2PRPF8
chr125383697153837080+intron-Distal,intron-Proximal3.785586.44564K562HNRNPK
chr125383571053835757+intron-Distal,intron-Proximal4.614144.96013K562PRPF8
chr125383697353837094+intron-Distal,intron-Proximal4.545419.27589HepG2PCBP2
chr125383562653835649+intron-Proximal4.955114.09264K562AQR
chr125383657053836612+intron-Proximal5.455116.83960K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRR13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRR13 is not available on ENCORE database.

  • 108 RBPs can affect the levels of PRR13.  








The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.





108 RBPs can affect the gene expression of PRR13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRR13ENSG00000205352.61246.693701034.446900.269102.957002.33130HepG2ACO1
PRR13ENSG00000205352.62145.765201690.776900.343702.139201.66530HepG2AKAP1
PRR13ENSG00000205352.61332.727401039.152900.358904.481103.52210HepG2AKAP8L
PRR13ENSG00000205352.62740.678701398.972300.9701016.1897014.46020HepG2ASCC1
PRR13ENSG00000205352.61767.262101373.998400.363003.928103.03210HepG2CALR
PRR13ENSG00000205352.62117.273601329.121200.671608.251006.97270HepG2CIRBP
PRR13ENSG00000205352.62068.735801795.739600.204102.148201.57070HepG2CELF1
PRR13ENSG00000205352.61639.632001930.65490-0.235702.992902.22590HepG2DAZAP1
PRR13ENSG00000205352.61284.60160956.630000.425206.932305.70880HepG2DDX19B
PRR13ENSG00000205352.61565.571601071.464700.547003.497602.74270HepG2DDX21
PRR13ENSG00000205352.6662.703801047.78400-0.660906.085804.73600HepG2DDX24
PRR13ENSG00000205352.62014.701401619.628600.314802.106701.55330HepG2DDX3X
PRR13ENSG00000205352.61627.323001221.365800.413902.580501.82980HepG2DDX55
PRR13ENSG00000205352.6965.220701400.66390-0.537202.460101.53880HepG2DDX59
PRR13ENSG00000205352.61278.89040989.637400.369803.264702.53890HepG2DKC1
PRR13ENSG00000205352.61616.317601274.764500.342404.118003.27410HepG2DNAJC21
PRR13ENSG00000205352.61427.75180923.913100.627806.235804.91910HepG2EIF3D
PRR13ENSG00000205352.61168.805801824.72800-0.642607.872006.52890HepG2EIF4G2
PRR13ENSG00000205352.61350.859402040.12600-0.5948013.3639012.20660HepG2ETF1
PRR13ENSG00000205352.61741.790501010.675000.7852013.6631011.88320HepG2EWSR1
PRR13ENSG00000205352.61306.371101708.43210-0.387102.357801.64290HepG2FIP1L1
PRR13ENSG00000205352.6744.026001235.49710-0.731702.901201.85960HepG2FTO
PRR13ENSG00000205352.6969.910201223.67970-0.335302.786801.99730HepG2FUBP3
PRR13ENSG00000205352.61036.10490822.612300.332802.333301.51800HepG2GEMIN5
PRR13ENSG00000205352.6704.497501059.33870-0.588505.419703.98890HepG2GNB2L1
PRR13ENSG00000205352.61174.93040987.488300.250602.445101.52040HepG2HDGF
PRR13ENSG00000205352.61806.599501286.977000.489205.465204.60090HepG2HNRNPA1
PRR13ENSG00000205352.61546.745002105.66640-0.445008.141906.99320HepG2HNRNPF
PRR13ENSG00000205352.61135.905701400.87000-0.302502.050901.44390HepG2HNRNPK
PRR13ENSG00000205352.61431.621301178.701700.280402.148401.30980HepG2HNRNPM
PRR13ENSG00000205352.61653.715102073.47530-0.326303.516902.70800HepG2IGF2BP1
PRR13ENSG00000205352.62713.339901406.210100.9482015.8940014.43610HepG2IGF2BP2
PRR13ENSG00000205352.62212.684401500.202400.560505.081804.25040HepG2MATR3
PRR13ENSG00000205352.61779.477401382.624700.363903.406902.51140HepG2MSI2
PRR13ENSG00000205352.6861.950501183.15190-0.457002.439101.73610HepG2NSUN2
PRR13ENSG00000205352.61000.253001268.36080-0.342603.659502.82390HepG2PPIL4
PRR13ENSG00000205352.6708.56470942.02580-0.410902.818202.00180HepG2PRPF8
PRR13ENSG00000205352.61731.043801468.046400.237602.540102.01200HepG2PTBP1
PRR13ENSG00000205352.62511.032701938.645700.373104.912104.03260HepG2PUM2
PRR13ENSG00000205352.61478.208801053.624100.488408.906607.90540HepG2PUS1
PRR13ENSG00000205352.61177.284301521.65160-0.370205.011304.21200HepG2RECQL
PRR13ENSG00000205352.61230.30580899.054400.452404.473603.71180HepG2RPS19
PRR13ENSG00000205352.61055.37850787.850200.421702.305501.57380HepG2RPS3A
PRR13ENSG00000205352.6649.10230931.84280-0.521603.785002.88450HepG2RRP9
PRR13ENSG00000205352.61279.164701528.44060-0.256902.710102.12410HepG2SF3B4
PRR13ENSG00000205352.61293.116801752.48410-0.438508.156607.04890HepG2SLBP
PRR13ENSG00000205352.62334.406801469.673200.667503.554702.66480HepG2SNRNP70
PRR13ENSG00000205352.61992.676701595.355000.320704.590804.02010HepG2SRSF1
PRR13ENSG00000205352.6981.082901421.10500-0.534603.867402.66190HepG2SRSF3
PRR13ENSG00000205352.61535.678502068.76470-0.429907.826406.75370HepG2SRSF7
PRR13ENSG00000205352.61892.113301672.152000.178201.752501.32160HepG2SSB
PRR13ENSG00000205352.62426.696202052.180600.241703.023002.37840HepG2SUCLG1
PRR13ENSG00000205352.6711.402101024.14850-0.525703.334601.86720HepG2SUGP2
PRR13ENSG00000205352.62017.716701215.804600.730707.720606.68370HepG2SUPV3L1
PRR13ENSG00000205352.6713.747701381.80850-0.9531019.7690018.65550HepG2TIAL1
PRR13ENSG00000205352.61150.721501394.14400-0.276803.043202.45840HepG2TRIM56
PRR13ENSG00000205352.61024.69600734.129000.481003.150801.48130HepG2TROVE2
PRR13ENSG00000205352.62108.357501785.559600.239602.080101.33240HepG2TUFM
PRR13ENSG00000205352.61153.693001461.41360-0.341102.551701.94630HepG2U2AF1
PRR13ENSG00000205352.6649.722901204.30740-0.890302.520801.58260HepG2U2AF2
PRR13ENSG00000205352.6541.95140718.18170-0.406202.651601.90920HepG2UCHL5
PRR13ENSG00000205352.62008.442701192.992400.751406.494104.91700HepG2XRCC6
PRR13ENSG00000205352.6853.412101172.80160-0.458607.107606.11110HepG2ZC3H8
PRR13ENSG00000205352.62394.469601454.816500.7188026.6830025.42640HepG2ZNF622
PRR13ENSG00000205352.64875.437706814.33060-0.483006.121704.30890K562ABCF1
PRR13ENSG00000205352.64932.001703194.902900.6263021.1366019.68070K562AGGF1
PRR13ENSG00000205352.64715.937003324.425700.504306.950605.87560K562AKAP8L
PRR13ENSG00000205352.62547.581305257.96940-1.0454024.7020023.13860K562AQR
PRR13ENSG00000205352.64719.170203488.093200.436008.085806.40250K562ATP5C1
PRR13ENSG00000205352.63253.957403801.01200-0.224202.814001.48890K562BCCIP
PRR13ENSG00000205352.62940.484803673.27030-0.321006.172204.71600K562BCLAF1
PRR13ENSG00000205352.63066.768704052.65540-0.402103.011102.09900K562BOP1
PRR13ENSG00000205352.62121.945303182.23660-0.584707.740105.74280K562CCAR1
PRR13ENSG00000205352.63010.694704309.16090-0.517308.638307.23720K562CPSF6
PRR13ENSG00000205352.67741.234309380.92340-0.277203.777302.63020K562CELF1
PRR13ENSG00000205352.65022.579903748.494500.422004.630402.71460K562DDX19B
PRR13ENSG00000205352.62276.089103220.59250-0.5008011.492708.95370K562DDX27
PRR13ENSG00000205352.62539.461203562.40500-0.488305.210703.27200K562DHX30
PRR13ENSG00000205352.65071.877403577.418400.503509.679707.83600K562DKC1
PRR13ENSG00000205352.62313.848103405.44500-0.557504.642702.94240K562EEF2
PRR13ENSG00000205352.62338.648303290.24620-0.492505.696204.35680K562EFTUD2
PRR13ENSG00000205352.62200.286503236.92720-0.556903.356802.24020K562EIF3A
PRR13ENSG00000205352.62317.983403522.71810-0.603805.998104.38770K562EIF3D
PRR13ENSG00000205352.62900.648202254.178600.363705.033603.97440K562EIF3G
PRR13ENSG00000205352.64505.311207628.72770-0.7598028.3340025.66670K562EIF4G2
PRR13ENSG00000205352.63655.810804384.41980-0.262202.081801.33530K562FMR1
PRR13ENSG00000205352.62458.526403716.16990-0.596007.255805.70320K562FTO
PRR13ENSG00000205352.63119.764502584.314000.271603.414502.75190K562FXR1
PRR13ENSG00000205352.61670.308202189.20480-0.390302.406101.75360K562G3BP2
PRR13ENSG00000205352.62578.080603298.70640-0.355602.852601.40730K562GEMIN5
PRR13ENSG00000205352.64034.282904999.37530-0.309404.549603.09150K562GLRX3
PRR13ENSG00000205352.63175.070704114.20850-0.373804.061503.10370K562GPKOW
PRR13ENSG00000205352.65428.042806311.45010-0.217502.013301.36260K562GRSF1
PRR13ENSG00000205352.63521.299204322.03160-0.295602.567701.53180K562HNRNPA1
PRR13ENSG00000205352.62384.164004368.69100-0.8737021.4034019.81940K562HNRNPC
PRR13ENSG00000205352.63095.525003901.20450-0.333702.925401.75000K562HNRNPF
PRR13ENSG00000205352.65400.328204029.107300.422503.742902.64790K562HNRNPM
PRR13ENSG00000205352.62313.262403324.61050-0.523305.558303.43790K562ILF3
PRR13ENSG00000205352.62647.669103512.96770-0.408002.767901.83450K562KRR1
PRR13ENSG00000205352.65822.102303952.357100.5587010.316608.35800K562MBNL1
PRR13ENSG00000205352.63374.901004015.91800-0.250902.102401.33840K562METAP2
PRR13ENSG00000205352.63458.460405256.15240-0.6039021.6208019.66710K562MTPAP
PRR13ENSG00000205352.63975.592702770.311300.521004.194803.04360K562NAA15
PRR13ENSG00000205352.65209.283105840.27540-0.165003.399402.58030K562NSUN2
PRR13ENSG00000205352.64085.157902743.721500.574202.409001.49900K562PABPN1
PRR13ENSG00000205352.62820.051804606.19020-0.707907.515306.14680K562PCBP3
PRR13ENSG00000205352.62302.148903533.11910-0.6180011.6516010.06420K562POLR2G
PRR13ENSG00000205352.62182.656803201.79190-0.552806.812005.63430K562PRPF8
PRR13ENSG00000205352.64258.724802983.333600.513408.324907.21420K562PTBP1
PRR13ENSG00000205352.65707.417203297.030400.791603.502302.90250K562PUS1
PRR13ENSG00000205352.65520.699403212.366300.7811023.9299022.11350K562RBM15
PRR13ENSG00000205352.64919.626005986.06290-0.283103.110601.40020K562RBM17
PRR13ENSG00000205352.65028.545405762.53700-0.196602.509301.73000K562SF3A3
PRR13ENSG00000205352.62633.205003912.68430-0.571306.028404.55890K562SF3B1
PRR13ENSG00000205352.61898.411102275.53540-0.261402.603901.77720K562SF3B4
PRR13ENSG00000205352.62603.981303505.10670-0.428704.581402.91650K562SLBP
PRR13ENSG00000205352.63195.182705279.75910-0.724606.093403.45320K562SMN1
PRR13ENSG00000205352.64609.030705903.81430-0.3572010.242108.56810K562SRPK2
PRR13ENSG00000205352.61510.289001967.42310-0.381503.988102.69070K562SRSF4
PRR13ENSG00000205352.64582.381805878.29760-0.359303.110701.77160K562STAU1
PRR13ENSG00000205352.62170.054403099.84640-0.514504.976503.57950K562SUPV3L1
PRR13ENSG00000205352.61955.550903767.48400-0.9460016.4023013.96540K562TIAL1
PRR13ENSG00000205352.63275.896104002.40150-0.289002.526101.62860K562TRIM56
PRR13ENSG00000205352.64273.814505729.93420-0.423004.365302.51120K562TRIP6
PRR13ENSG00000205352.611447.396709385.103100.286502.801801.39180K562UBE2L3
PRR13ENSG00000205352.63508.358204643.90530-0.404503.588902.21300K562UTP3
PRR13ENSG00000205352.64126.333205298.79810-0.360804.562003.42510K562WDR3
PRR13ENSG00000205352.64485.808805509.94160-0.296706.655405.39660K562WDR43
PRR13ENSG00000205352.64539.940505923.28430-0.383704.444303.30970K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.





18 RBPs can affect the splicing of PRR13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPRR13ENSG00000205352.6chr12+5383727053837557538373505383755753836478538365170.372000.000820.06681longerHepG2HNRNPK
A3SSPRR13ENSG00000205352.6chr12+538371745383755753837270538375575383647853836517-0.298000.000000.00071shorterHepG2HNRNPK
A3SSPRR13ENSG00000205352.6chr12+5383717453837557538373505383755753836478538365170.079000.000000.00133longerK562PPIL4
A3SSPRR13ENSG00000205352.6chr12+538371745383755753837462538375575383647853836517-0.576000.000000.00000shorterK562U2AF2
A3SSPRR13ENSG00000205352.6chr12+5383717453837557538373505383755753836478538365170.178000.000020.01782longerHepG2IGF2BP3
A3SSPRR13ENSG00000205352.6chr12+538373505383755753837462538375575383647853836517-0.750000.000930.02523shorterHepG2U2AF2
A3SSPRR13ENSG00000205352.6chr12+5383717453837557538373505383755753836478538365170.085000.000150.04732longerK562DROSHA
A3SSPRR13ENSG00000205352.6chr12+5383717453837557538373505383755753836442538365170.088000.000000.00000longerK562SBDS
A3SSPRR13ENSG00000205352.6chr12+538371745383755753837462538375575383647853836517-0.100000.000230.01159shorterHepG2U2AF1
A3SSPRR13ENSG00000205352.6chr12+538371745383755753837462538375575383647853836517-0.477000.000000.00000shorterK562U2AF1
A3SSPRR13ENSG00000205352.6chr12+538371745383755753837462538375575383647853836517-0.059000.000020.00353shorterK562RBM15
A3SSPRR13ENSG00000205352.6chr12+5383717453837557538373245383755753836478538365170.054000.000000.00080longerK562HNRNPC
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.148000.000000.000071includedHepG2FTO
MXEPRR13ENSG00000205352.6chr12+5383647853836517538373245383755753835532538355765383979853840320-0.088000.001010.032272includedK562RBM15
MXEPRR13ENSG00000205352.6chr12+5383647853836517538371745383755753835388538355765383979853840417-0.088000.000990.031812includedK562RBM15
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.152000.000000.000021includedK562SRSF1
MXEPRR13ENSG00000205352.6chr12+5383647853836517538373245383755753835532538355765383979853840320-0.135000.000000.000022includedK562UTP3
MXEPRR13ENSG00000205352.6chr12+5383647853836517538371745383755753835388538355765383979853840417-0.135000.000000.000022includedK562UTP3
MXEPRR13ENSG00000205352.6chr12+5383647853836517538373505383755753835528538355765383979853840259-0.135000.000000.000022includedK562UTP3
MXEPRR13ENSG00000205352.6chr12+5383647853836517538373505383755753835528538355765383979853840259-0.101000.000130.003192includedK562U2AF2
MXEPRR13ENSG00000205352.6chr12+53836478538365175383727053837557538355155383557653839798538404200.176000.000000.000441includedK562LARP7
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.180000.000000.000291includedK562PHF6
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.108000.005280.089201includedK562SBDS
MXEPRR13ENSG00000205352.6chr12+53836478538365175383717453837557538353885383557653839798538404170.108000.005110.087901includedK562SBDS
MXEPRR13ENSG00000205352.6chr12+5383647853836517538372705383755753835515538355765383979853840420-0.080000.000850.066782includedK562PUM1
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.087000.000260.031791includedK562ZNF800
MXEPRR13ENSG00000205352.6chr12+53836478538365175383732453837557538355325383557653839798538403200.095000.003540.081141includedK562DHX30
MXEPRR13ENSG00000205352.6chr12+53836478538365175383735453837557538355315383557653839798538400990.096000.001050.025331includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRR13 is not avaliable on ENCORE database.