PKN3

General Information

Gene Name : PKN3
Gene ID : ENSG00000160447.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PKN3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PKN3	ENSG00000160447.6	1.30	2.09	1.69	ENCSR000AEF
HepG2	PKN3	ENSG00000160447.6	16.44	9.82	13.13	ENCSR985KAT
K562	PKN3	ENSG00000160447.6	20.48	13.25	16.87	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PKN3 is not avaliable on ENCORE database.

Proteins bound to RNA

PKN3 RNA is bound by 23 proteins.

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eCLIP assay for PKN3 is not avaliable on ENCORE database.

23 proteins are bound to PKN3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	131465862	131466027	+	intron-Distal	4.87562	21.20588	K562	CSTF2T
chr9	131466213	131466287	+	intron-Distal	6.02359	17.89843	K562	NONO
chr9	131465881	131465946	+	intron-Distal	4.81496	15.10662	K562	NONO
chr9	131465741	131465839	+	intron-Distal	5.10716	14.17100	K562	EWSR1
chr9	131466138	131466213	+	intron-Distal	4.30260	13.85198	K562	NONO
chr9	131466314	131466564	+	intron-Distal	3.68629	13.38363	K562	FUS
chr9	131466052	131466115	+	intron-Distal	4.49809	11.26712	K562	NONO
chr9	131466492	131466565	+	intron-Distal	3.93122	11.09092	K562	NONO
chr9	131465755	131465807	+	intron-Distal	4.39870	11.04345	K562	GEMIN5
chr9	131465957	131466052	+	intron-Distal	3.35581	10.81517	K562	NONO
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 75 entries

eCLIP assay for PKN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PKN3 is not available on ENCORE database.
94 RBPs can affect the levels of PKN3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PKN3 is not available on ENCORE database.

94 RBPs can affect the gene expression of PKN3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PKN3	ENSG00000160447.6	38.85490	218.83650	-2.49370	20.26630	17.85710	K562	G3BP2
PKN3	ENSG00000160447.6	149.85800	434.61890	-1.53620	19.49900	17.79730	HepG2	CALR
PKN3	ENSG00000160447.6	151.98080	442.07220	-1.54040	18.81310	17.34870	HepG2	RPLP0
PKN3	ENSG00000160447.6	268.64830	711.32420	-1.40480	18.32140	17.33320	HepG2	SRFBP1
PKN3	ENSG00000160447.6	820.90440	1549.59620	-0.91660	13.47170	12.31540	K562	AQR
PKN3	ENSG00000160447.6	273.46130	503.46820	-0.88060	12.36070	11.41200	HepG2	ZNF622
PKN3	ENSG00000160447.6	216.07520	455.84510	-1.07700	12.28790	10.43070	HepG2	SUPT6H
PKN3	ENSG00000160447.6	629.77270	305.42900	1.04390	10.88590	9.60260	HepG2	FXR1
PKN3	ENSG00000160447.6	336.75470	629.81460	-0.90320	9.15220	8.33460	HepG2	RBM22
PKN3	ENSG00000160447.6	559.56070	286.98490	0.96320	9.32240	8.10050	HepG2	HNRNPK
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PKN3 is not available on ENCORE database.

8 RBPs can affect the splicing of PKN3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739			131477450	131477514	131479025	131479202	-0.13900	0.00000	0.00022	excluded	K562	PRPF8
SE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739			131477450	131477514	131479025	131479202	-0.17600	0.00000	0.00000	excluded	K562	EFTUD2
MXE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739	131479025	131479202	131477450	131477514	131480603	131480666	0.13100	0.00004	0.00273	1included	K562	DHX30
SE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739			131477450	131477514	131479025	131479202	-0.11600	0.00081	0.01746	excluded	K562	SRSF1
A5SS	PKN3	ENSG00000160447.6	chr9	+	131482481	131482562			131482481	131482518	131482672	131483197	0.39100	0.00087	0.05175	longer	HepG2	SRSF1
MXE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739	131479025	131479202	131477450	131477514	131480603	131480666	-0.15000	0.00113	0.03564	2included	K562	EFTUD2
MXE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739	131479025	131479202	131477450	131477514	131480603	131480666	-0.16000	0.00123	0.02711	2included	K562	PRPF8
RI	PKN3	ENSG00000160447.6	chr9	+	131476919	131477144			131476919	131476943	131477076	131477144	0.15000	0.00255	0.01985	included	HepG2	U2AF2
MXE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739	131479025	131479202	131477450	131477514	131480603	131480666	0.14500	0.00287	0.07398	1included	K562	DDX55
MXE	PKN3	ENSG00000160447.6	chr9	+	131477647	131477739	131479025	131479202	131477450	131477514	131480603	131480666	0.20000	0.00622	0.09482	1included	HepG2	DDX55

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PKN3

General Information

Functions

Localization

Domains (AlphaFold: PKN3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PKN3 is not avaliable on ENCORE database.

23 proteins are bound to PKN3 RNA:

eCLIP assay for PKN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PKN3 is not available on ENCORE database.

94 RBPs can affect the gene expression of PKN3 :

The Knockdown/knockout RNA-Seq assay for PKN3 is not available on ENCORE database.

8 RBPs can affect the splicing of PKN3 :

The Knockdown/knockout RNA-Seq assay for PKN3 is not avaliable on ENCORE database.