PGRMC1

General Information

Gene Name       : PGRMC1
Gene ID             : ENSG00000101856.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PGRMC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PGRMC1ENSG00000101856.929.6927.5128.60ENCSR000AEF
HepG2PGRMC1ENSG00000101856.948.8578.1463.50ENCSR985KAT
K562PGRMC1ENSG00000101856.962.9160.7561.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PGRMC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PGRMC1 RNA is bound by 19 proteins.  







eCLIP assay for PGRMC1 is not avaliable on ENCORE database.





19 proteins are bound to PGRMC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX118378143118378231+3'-UTR4.089453.97153HepG2UPF1
chrX118377951118377998+3'-UTR4.054743.76295K562IGF2BP2
chrX118377990118378054+3'-UTR3.275098.08325K562UPF1
chrX118377837118377904+3'-UTR4.316594.43679K562IGF2BP1
chrX118377456118377535+3'-UTR4.537495.85471K562NOLC1
chrX118377640118377708+3'-UTR3.433874.02462K562TIA1
chrX118377758118377856+3'-UTR4.963698.55453HepG2UPF1
chrX118377459118377546+3'-UTR4.8769915.76809HepG2SUB1
chrX118378327118378376+3'-UTR4.154939.04309K562UPF1
chrX118377650118377721+3'-UTR3.236707.26405K562IGF2BP1
chrX118377989118378062+3'-UTR4.228946.10933HepG2UPF1
chrX118378259118378327+3'-UTR3.424099.73684K562UPF1
chrX118378299118378398+3'-UTR3.483819.52500HepG2FUBP3
chrX118377826118377903+3'-UTR3.279396.62993K562UPF1
chrX118378150118378252+3'-UTR4.385879.21358K562IGF2BP1
chrX118378271118378320+3'-UTR3.280888.47986K562PUM2
chrX118378331118378411+3'-UTR6.3983815.75633HepG2SUB1
chrX118378145118378259+3'-UTR3.0593910.43167K562UPF1
chrX118378063118378119+3'-UTR4.723373.95192HepG2UPF1
chrX118377641118377722+3'-UTR3.029167.73436K562UPF1
chrX118378056118378126+3'-UTR4.677795.09622HepG2IGF2BP1
chrX118370319118370340+5'-UTR,CDS3.644385.78947K562YBX3
chrX118370258118370317+5'-UTR4.5647013.13184HepG2DDX3X
chrX118370316118370389+5'-UTR,CDS4.3527512.18649HepG2RPS3
chrX118370543118370563+CDS3.4473710.15545K562YBX3
chrX118374301118374375+CDS,intron-Distal3.691657.07289HepG2LIN28B
chrX118374343118374424+CDS,intron-Distal4.4018219.50019K562SND1
chrX118370636118370655+CDS,intron-Proximal3.453659.39521HepG2LIN28B
chrX118370400118370447+CDS4.098357.99227HepG2RPS3
chrX118377119118377171+CDS3.906353.12746HepG2GRWD1
chrX118370640118370654+CDS5.434249.05435K562LIN28B
chrX118374271118374329+CDS,intron-Distal,intron-Proximal6.0207616.16491K562LIN28B
chrX118370532118370589+CDS3.873077.86100HepG2RPS3
chrX118374271118374286+CDS,intron-Distal,intron-Proximal4.0148311.37914HepG2LIN28B
chrX118370535118370598+CDS4.666438.33615HepG2SND1
chrX118370612118370655+CDS,intron-Proximal3.195149.99200K562SND1
chrX118377113118377189+CDS,intron-Proximal3.208033.16615HepG2G3BP1
chrX118377125118377214+CDS4.124265.77244K562UCHL5
chrX118370340118370365+CDS3.372337.44661K562YBX3
chrX118370635118370654+CDS5.2830318.58043HepG2SND1
chrX118374363118374422+CDS,intron-Distal4.8502414.75354HepG2SND1
chrX118370405118370417+CDS4.146663.67607K562YBX3
chrX118377128118377178+CDS4.3830711.23424HepG2SND1
chrX118370453118370518+CDS4.0579110.31486HepG2RPS3
chrX118370475118370531+CDS3.786755.82787HepG2SND1
chrX118374271118374343+CDS,intron-Distal,intron-Proximal3.7809117.77237K562SND1
chrX118370403118370489+CDS4.284143.81597K562RBM15
chrX118370326118370389+CDS4.9503310.30616HepG2DDX3X
chrX118374271118374309+CDS,intron-Distal,intron-Proximal3.820765.92869HepG2RPS3
chrX118370417118370491+CDS3.401128.96972K562YBX3
chrX118374286118374298+CDS,intron-Distal3.554879.28051HepG2LIN28B
chrX118370563118370585+CDS3.4970710.70078K562YBX3
chrX118374271118374363+CDS,intron-Distal,intron-Proximal5.9536830.11105HepG2SND1
chrX118377117118377177+CDS3.573906.83669K562SND1
chrX118374271118374299+CDS,intron-Distal,intron-Proximal4.940766.00247K562RPS3
chrX118376008118376108+intron-Distal4.015843.28841HepG2PTBP1
chrX118376608118376693+intron-Distal3.354393.84494HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PGRMC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PGRMC1 is not available on ENCORE database.

  • 118 RBPs can affect the levels of PGRMC1.  








The Knockdown/knockout RNA-Seq assay for PGRMC1 is not available on ENCORE database.





118 RBPs can affect the gene expression of PGRMC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PGRMC1ENSG00000101856.81122.948601455.88520-0.374603.336202.16550HepG2AATF
PGRMC1ENSG00000101856.81511.501402233.09030-0.5631014.3906013.23520HepG2ACO1
PGRMC1ENSG00000101856.82164.978801262.131700.7784011.360709.52220HepG2ADAR
PGRMC1ENSG00000101856.81884.860004783.90670-1.3437026.5632025.11020HepG2AKAP1
PGRMC1ENSG00000101856.83081.573103958.22440-0.361203.022202.20170HepG2ASCC1
PGRMC1ENSG00000101856.81548.937802035.30430-0.394002.547001.65040HepG2BCCIP
PGRMC1ENSG00000101856.8680.427901327.43530-0.9641015.6134014.35670HepG2BOP1
PGRMC1ENSG00000101856.82116.069101634.740700.372204.312203.37440HepG2CALR
PGRMC1ENSG00000101856.82065.064301218.641700.760809.128007.94760HepG2CPSF6
PGRMC1ENSG00000101856.8975.952201294.27830-0.407304.721503.39510HepG2YBX3
PGRMC1ENSG00000101856.81908.549802608.79970-0.450908.608407.59490HepG2CELF1
PGRMC1ENSG00000101856.81567.379002065.22150-0.397907.826606.54430HepG2DDX19B
PGRMC1ENSG00000101856.8958.361501296.12530-0.435602.961701.76800HepG2DDX1
PGRMC1ENSG00000101856.82007.092301572.026600.352403.534002.49210HepG2DDX24
PGRMC1ENSG00000101856.81089.808502001.11120-0.8767010.633009.23440HepG2DDX55
PGRMC1ENSG00000101856.82386.459601649.031100.533206.030704.59280HepG2DDX5
PGRMC1ENSG00000101856.81692.249503936.74820-1.2181021.8881020.37190HepG2DDX6
PGRMC1ENSG00000101856.83173.071202136.424500.5706014.9119013.60350HepG2DKC1
PGRMC1ENSG00000101856.8942.851301259.63510-0.417906.845105.88490HepG2DNAJC2
PGRMC1ENSG00000101856.82727.693303784.20680-0.472304.658203.89980HepG2EIF2S1
PGRMC1ENSG00000101856.8822.090401119.69460-0.445703.203402.23650HepG2EIF3D
PGRMC1ENSG00000101856.82425.716304181.85560-0.785709.975108.77890HepG2EIF4A3
PGRMC1ENSG00000101856.83221.878704071.88620-0.337801.876201.30200HepG2EIF4B
PGRMC1ENSG00000101856.81589.517502767.44710-0.8000022.7354020.83810HepG2EIF4G1
PGRMC1ENSG00000101856.83447.305002651.091300.378802.523101.74360HepG2EIF4G2
PGRMC1ENSG00000101856.82383.038202901.76820-0.284102.373101.80850HepG2ETF1
PGRMC1ENSG00000101856.81211.693901878.36130-0.632406.215805.10730HepG2FIP1L1
PGRMC1ENSG00000101856.81390.048701969.05650-0.502406.056804.91350HepG2FUBP3
PGRMC1ENSG00000101856.82830.581804219.73390-0.576106.896805.83500HepG2FXR1
PGRMC1ENSG00000101856.82235.810403914.20260-0.8079011.216909.92170HepG2G3BP1
PGRMC1ENSG00000101856.81870.929601381.380600.437503.362402.66120HepG2GPKOW
PGRMC1ENSG00000101856.81479.638502131.87350-0.5269011.404009.61810HepG2HDGF
PGRMC1ENSG00000101856.81893.727901283.117600.561507.075306.11400HepG2HNRNPA1
PGRMC1ENSG00000101856.81735.122901427.203000.281702.094201.48100HepG2HNRNPC
PGRMC1ENSG00000101856.82816.088703963.99670-0.493305.964104.96780HepG2HNRNPK
PGRMC1ENSG00000101856.82248.382602555.65580-0.184802.775902.10130HepG2HNRNPL
PGRMC1ENSG00000101856.82402.628801318.281000.8659013.6372012.38100HepG2HNRNPLL
PGRMC1ENSG00000101856.81177.659201417.76920-0.267702.955602.33090HepG2HNRNPU
PGRMC1ENSG00000101856.81784.889201308.762300.447503.126701.80960HepG2HSPD1
PGRMC1ENSG00000101856.82299.738803734.08060-0.699303.192802.13290HepG2IGF2BP3
PGRMC1ENSG00000101856.81041.389001448.20910-0.475809.705208.41460HepG2ILF2
PGRMC1ENSG00000101856.82553.413004001.96120-0.648306.075904.53450HepG2KHSRP
PGRMC1ENSG00000101856.81198.657001694.34110-0.499305.188603.63760HepG2LARP7
PGRMC1ENSG00000101856.82763.063304244.76670-0.619406.708505.75910HepG2MATR3
PGRMC1ENSG00000101856.8817.849501171.84870-0.518902.589101.56900HepG2METAP2
PGRMC1ENSG00000101856.82986.509504344.69960-0.540805.602804.71540HepG2NCBP2
PGRMC1ENSG00000101856.81824.082802781.85930-0.6089012.0348010.49410HepG2NOL12
PGRMC1ENSG00000101856.81723.425601168.940700.560006.252905.15470HepG2NSUN2
PGRMC1ENSG00000101856.82882.698003868.98510-0.424503.777102.94320HepG2PABPC4
PGRMC1ENSG00000101856.83029.892203912.24030-0.368707.641406.71230HepG2PCBP1
PGRMC1ENSG00000101856.81657.485101251.445900.405306.043404.94740HepG2PRPF4
PGRMC1ENSG00000101856.81733.498903980.74350-1.1994061.9482060.14650HepG2PTBP1
PGRMC1ENSG00000101856.81094.327802818.74380-1.3650072.8774070.71290HepG2PUM1
PGRMC1ENSG00000101856.82398.569902816.75550-0.231902.365001.74410HepG2PUM2
PGRMC1ENSG00000101856.82805.493902274.526000.302605.233204.43520HepG2PUS1
PGRMC1ENSG00000101856.82036.095804311.47200-1.0824040.5322038.64850HepG2QKI
PGRMC1ENSG00000101856.81306.550101802.89370-0.464602.115501.49270HepG2RAVER1
PGRMC1ENSG00000101856.81293.100002335.05900-0.8526019.4704017.55500HepG2RBM15
PGRMC1ENSG00000101856.81972.373402425.38190-0.298302.763502.24600HepG2RBM22
PGRMC1ENSG00000101856.82706.372603912.85170-0.531908.660407.51550HepG2RBM25
PGRMC1ENSG00000101856.82260.452904430.27440-0.9708044.6429043.06350HepG2NELFE
PGRMC1ENSG00000101856.82123.820504126.03700-0.9581043.9083042.04810HepG2RECQL
PGRMC1ENSG00000101856.8697.400201089.53400-0.643707.738606.77210HepG2RPS19
PGRMC1ENSG00000101856.81337.902801884.31160-0.494104.655003.63140HepG2RPS2
PGRMC1ENSG00000101856.81669.391801140.185500.550003.878802.93210HepG2RPS3A
PGRMC1ENSG00000101856.81386.894101923.40170-0.471804.160202.83040HepG2RPS5
PGRMC1ENSG00000101856.8855.082301527.13060-0.836709.447108.11880HepG2RRP9
PGRMC1ENSG00000101856.82095.029804144.66010-0.9843045.7427043.90750HepG2SF3B4
PGRMC1ENSG00000101856.81165.766301839.47780-0.658005.322403.96540HepG2SMNDC1
PGRMC1ENSG00000101856.82123.165302739.45160-0.367703.744903.18900HepG2SRFBP1
PGRMC1ENSG00000101856.82614.320704326.04930-0.7266024.4790023.37730HepG2SRSF1
PGRMC1ENSG00000101856.8662.059201404.05550-1.0846012.9140010.66690HepG2SRSF3
PGRMC1ENSG00000101856.82249.256402621.71530-0.221102.894402.25470HepG2SRSF5
PGRMC1ENSG00000101856.81503.812203519.40400-1.2267069.4183067.42510HepG2SRSF9
PGRMC1ENSG00000101856.84431.675602378.618300.8976020.9755019.85070HepG2SSB
PGRMC1ENSG00000101856.82063.214002981.72910-0.5313016.2193014.91460HepG2SUCLG1
PGRMC1ENSG00000101856.82320.121103888.20410-0.7449021.7405020.37780HepG2TAF15
PGRMC1ENSG00000101856.82084.074201280.634000.702403.352002.17990HepG2TBRG4
PGRMC1ENSG00000101856.81966.822103572.96090-0.8613021.5517019.31100HepG2TIA1
PGRMC1ENSG00000101856.81153.274401389.93590-0.269302.992802.41140HepG2TRIM56
PGRMC1ENSG00000101856.82027.215402594.05820-0.355704.143803.04990HepG2TUFM
PGRMC1ENSG00000101856.81009.270401606.69690-0.670808.403807.30780HepG2U2AF1
PGRMC1ENSG00000101856.81737.641702745.64770-0.660007.760606.33150HepG2UBE2L3
PGRMC1ENSG00000101856.8677.849901176.81290-0.795809.337907.94430HepG2UCHL5
PGRMC1ENSG00000101856.82856.412702511.516700.185502.193901.56010HepG2UPF1
PGRMC1ENSG00000101856.83034.805402424.775700.323705.713204.90340HepG2UTP3
PGRMC1ENSG00000101856.81413.845701021.250300.469202.791401.68870HepG2XPO5
PGRMC1ENSG00000101856.81272.719901773.26950-0.478502.856301.57390HepG2XRCC5
PGRMC1ENSG00000101856.82372.572502762.19230-0.219403.526102.92920HepG2ZNF622
PGRMC1ENSG00000101856.83524.106002013.007400.8078030.3944028.60150K562AGGF1
PGRMC1ENSG00000101856.83046.972602094.639300.540607.570006.44240K562AKAP8L
PGRMC1ENSG00000101856.81586.493701932.85160-0.284903.657602.54650K562BCLAF1
PGRMC1ENSG00000101856.8895.121801214.79490-0.440603.561402.57200K562BOP1
PGRMC1ENSG00000101856.8918.685201291.68680-0.491605.548404.44480K562CPSF6
PGRMC1ENSG00000101856.81207.665401466.35570-0.280002.767001.71200K562CSTF2
PGRMC1ENSG00000101856.81865.032102622.80590-0.4919010.553709.37430K562DDX47
PGRMC1ENSG00000101856.83001.031902253.895000.412907.273205.74070K562DKC1
PGRMC1ENSG00000101856.8945.236001646.68020-0.800807.807905.70490K562EEF2
PGRMC1ENSG00000101856.8554.70100794.19360-0.517802.389401.46110K562EIF3A
PGRMC1ENSG00000101856.81151.097501703.81830-0.565804.650203.26840K562EIF3D
PGRMC1ENSG00000101856.81278.556201571.15000-0.297303.237602.38010K562EIF3G
PGRMC1ENSG00000101856.81251.371701876.07340-0.584207.088605.78110K562EIF4A3
PGRMC1ENSG00000101856.82951.396003884.36110-0.396307.013705.53470K562EIF4G2
PGRMC1ENSG00000101856.81020.878201314.23890-0.364402.713501.86830K562FMR1
PGRMC1ENSG00000101856.8876.404201233.25200-0.492804.903203.84910K562GPKOW
PGRMC1ENSG00000101856.82157.573202899.07390-0.426204.066603.15230K562GRSF1
PGRMC1ENSG00000101856.81882.058502369.02940-0.332003.430902.23130K562HNRNPA1
PGRMC1ENSG00000101856.8853.770901537.07390-0.8483014.5184013.23800K562HNRNPC
PGRMC1ENSG00000101856.81053.747901372.50110-0.381303.457602.17220K562HNRNPF
PGRMC1ENSG00000101856.81595.312002390.98940-0.583805.852003.14880K562KHSRP
PGRMC1ENSG00000101856.82920.491802222.887200.393704.636203.52140K562KIF1C
PGRMC1ENSG00000101856.82647.065602127.889500.314902.677201.62250K562MAK16
PGRMC1ENSG00000101856.83490.023202490.202000.486907.139505.55110K562MBNL1
PGRMC1ENSG00000101856.82825.818804140.32150-0.551107.487905.68190K562MSI2
PGRMC1ENSG00000101856.81515.022002086.37540-0.461709.331707.93610K562MTPAP
PGRMC1ENSG00000101856.82565.022301745.455500.555304.419103.22520K562NAA15
PGRMC1ENSG00000101856.8858.351101561.33960-0.863105.006202.13290K562NFX1
PGRMC1ENSG00000101856.81774.629602318.16260-0.385509.262708.00580K562NSUN2
PGRMC1ENSG00000101856.83227.519203991.30760-0.306403.872002.18610K562PNPT1
PGRMC1ENSG00000101856.82781.893304508.01990-0.6964017.2104014.47110K562PUM1
PGRMC1ENSG00000101856.83597.816902077.208500.7924013.8137012.64550K562PUS1
PGRMC1ENSG00000101856.82858.493402024.008700.497909.122608.07010K562RBM15
PGRMC1ENSG00000101856.81506.268002315.21410-0.620208.528906.93400K562RBM22
PGRMC1ENSG00000101856.8961.953201257.20940-0.386203.525802.40870K562RCC2
PGRMC1ENSG00000101856.81208.479801577.31220-0.384302.412301.65200K562RPS19
PGRMC1ENSG00000101856.8929.422001347.87060-0.536304.773703.41230K562RPS3
PGRMC1ENSG00000101856.81921.941802287.41680-0.251202.772401.95700K562SF3A3
PGRMC1ENSG00000101856.8932.368101191.81590-0.354202.601701.61740K562SRFBP1
PGRMC1ENSG00000101856.81923.764402366.72200-0.299002.842102.12700K562SRSF1
PGRMC1ENSG00000101856.8999.506901301.41210-0.380802.740801.69730K562SRSF4
PGRMC1ENSG00000101856.81411.953001690.34910-0.259602.469101.36690K562SRSF7
PGRMC1ENSG00000101856.81079.762801499.39330-0.473703.596602.42130K562SUPV3L1
PGRMC1ENSG00000101856.81936.546002310.58860-0.254802.246001.51550K562TIA1
PGRMC1ENSG00000101856.81036.969501325.53630-0.354202.358701.49980K562TIAL1
PGRMC1ENSG00000101856.81117.877901408.04970-0.332902.692601.76200K562TRIM56
PGRMC1ENSG00000101856.81657.380402457.99600-0.5686014.4851012.99550K562UPF1
PGRMC1ENSG00000101856.81762.660502103.23110-0.254902.166601.39340K562WDR3
PGRMC1ENSG00000101856.81654.333502187.10560-0.402808.006306.63640K562WDR43
PGRMC1ENSG00000101856.81268.092301615.59990-0.349402.442701.33020K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PGRMC1 is not available on ENCORE database.





1 RBPs can affect the splicing of PGRMC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPGRMC1ENSG00000101856.8chrX+1183742441183744271183742711183744271183702151183706540.056000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PGRMC1 is not avaliable on ENCORE database.