MRPL28

General Information

Gene Name       : MRPL28
Gene ID             : ENSG00000086504.16
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: MRPL28)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPL28ENSG00000086504.1621.0071.7346.37ENCSR000AEF
HepG2MRPL28ENSG00000086504.16106.6560.6383.64ENCSR985KAT
K562MRPL28ENSG00000086504.16167.84147.54157.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPL28 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPL28 RNA is bound by 25 proteins.  







eCLIP assay for MRPL28 is not avaliable on ENCORE database.





25 proteins are bound to MRPL28 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16417408417463-3'-UTR,CDS,intron-Distal,intron-Proximal4.840994.29122HepG2SUB1
chr16417405417457-3'-UTR,CDS,intron-Distal,intron-Proximal4.166213.02060K562LIN28B
chr16417564417612-3'-UTR,intron-Distal,intron-Proximal4.9729318.74132K562PABPC4
chr16417483417600-3'-UTR,CDS,intron-Distal,intron-Proximal4.544254.78834HepG2PABPN1
chr16417415417565-3'-UTR,CDS,intron-Distal,intron-Proximal5.7056822.43936HepG2UPF1
chr16417570417690-3'-UTR,CDS,intron-Distal,intron-Proximal4.414498.02139HepG2LARP4
chr16417408417449-3'-UTR,CDS,intron-Distal,intron-Proximal3.302663.42164K562UPF1
chr16417583417692-3'-UTR,CDS,intron-Distal,intron-Proximal3.138569.78579K562DDX55
chr16417442417577-3'-UTR,CDS,intron-Distal,intron-Proximal3.203245.27768K562DDX6
chr16417467417559-3'-UTR,CDS,intron-Distal,intron-Proximal3.228445.90738K562UPF1
chr16417452417564-3'-UTR,CDS,intron-Distal,intron-Proximal5.4179526.62707K562PABPC4
chr16417592417784-3'-UTR,CDS,intron-Distal,intron-Proximal3.095645.15172HepG2G3BP1
chr16417487417562-3'-UTR,CDS,intron-Distal,intron-Proximal3.644135.00851HepG2LARP4
chr16417612417697-3'-UTR,CDS,intron-Distal,intron-Proximal5.7187926.49232K562PABPC4
chr16417621417678-3'-UTR,intron-Distal,intron-Proximal3.854893.83202K562DDX6
chr16417463417609-3'-UTR,CDS,intron-Distal,intron-Proximal3.408686.74192HepG2AKAP1
chr16419587419658-5'-UTR,CDS,intron-Distal4.153714.48935K562CSTF2T
chr16420214420311-5'-UTR,CDS,intron-Distal,intron-Proximal5.251246.57024HepG2AQR
chr16420403420467-5'-UTR,intron-Distal,intron-Proximal4.695693.13028HepG2FAM120A
chr16420223420311-5'-UTR,intron-Distal,intron-Proximal3.279829.03257HepG2FAM120A
chr16420214420291-5'-UTR,CDS,intron-Distal,intron-Proximal3.289234.05505HepG2SF3B4
chr16420207420310-5'-UTR,CDS,intron-Distal,intron-Proximal3.147883.90609K562GTF2F1
chr16419616419680-5'-UTR,CDS,intron-Distal3.411743.29499HepG2PRPF4
chr16420208420290-5'-UTR,CDS,intron-Distal,intron-Proximal4.162806.23016HepG2PRPF8
chr16420419420466-5'-UTR,intron-Distal,intron-Proximal4.832333.48173K562GTF2F1
chr16420216420295-5'-UTR,CDS,intron-Distal,intron-Proximal4.047893.58513HepG2GTF2F1
chr16420496420519-5'-UTR,intron-Distal,intron-Proximal3.241473.38111K562DDX3X
chr16417719417784-CDS,intron-Distal,intron-Proximal5.5258818.55508K562PABPC4
chr16419032419078-CDS,intron-Distal,intron-Proximal3.663764.70265HepG2AQR
chr16418607418659-CDS,intron-Distal,intron-Proximal5.4423413.23057K562AQR
chr16418326418409-CDS,intron-Distal,intron-Proximal4.136515.24452HepG2PPIG
chr16418327418377-CDS,intron-Distal,intron-Proximal3.545704.10134HepG2LARP4
chr16418602418695-CDS,intron-Distal,intron-Proximal4.495648.29703HepG2AQR
chr16418557418607-CDS,intron-Distal4.413886.80869K562AQR
chr16417693417781-CDS,intron-Distal,intron-Proximal4.466615.58993HepG2PABPN1
chr16417718417783-CDS,intron-Distal,intron-Proximal3.205624.49115HepG2LARP4
chr16419950420000-CDS,intron-Distal4.361547.05666K562RPS3
chr16419142419199-CDS,intron-Distal4.130083.60441HepG2GRWD1
chr16419012419071-CDS,intron-Distal,intron-Proximal3.6190610.05760HepG2PRPF8
chr16419192419220-CDS,intron-Distal,intron-Proximal4.081883.86978K562YBX3
chr16419002419160-CDS,intron-Distal,intron-Proximal3.456486.47139HepG2PPIG
chr16417692417784-CDS,intron-Distal,intron-Proximal3.5134210.42222K562DDX55
chr16417704417783-CDS,intron-Distal,intron-Proximal3.286963.72790K562APOBEC3C
chr16418327418340-CDS,intron-Distal,intron-Proximal4.004643.58497K562DDX55
chr16419019419070-CDS,intron-Distal,intron-Proximal4.4676622.32840K562AQR
chr16418535418636-CDS,intron-Distal,intron-Proximal3.498845.62335HepG2RPS3
chr16418329418401-CDS,intron-Distal,intron-Proximal3.130083.80299HepG2GRWD1
chr16418530418602-CDS,intron-Distal3.899664.57180HepG2AQR
chr16418976419078-CDS,intron-Distal,intron-Proximal4.002197.36824K562RBM15
chr16418327418344-CDS,intron-Distal,intron-Proximal4.400766.92152K562PABPC4
chr16418611418634-CDS,intron-Distal3.224263.13705K562BUD13
chr16418964419019-intron-Distal,intron-Proximal5.1590610.08262K562AQR
chr16418669418697-intron-Distal,intron-Proximal4.094883.28989K562RBM15
chr16418725418790-intron-Distal,intron-Proximal3.557884.80676K562RBM15
chr16420233420302-intron-Distal,intron-Proximal5.058739.02211HepG2PRPF4
chr16420239420277-intron-Distal,intron-Proximal4.477364.22101K562PRPF8
chr16418983419057-intron-Distal,intron-Proximal5.452215.74423HepG2BUD13
chr16420231420307-intron-Distal,intron-Proximal4.165254.71107K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPL28 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPL28 is not available on ENCORE database.

  • 107 RBPs can affect the levels of MRPL28.  








The Knockdown/knockout RNA-Seq assay for MRPL28 is not available on ENCORE database.





107 RBPs can affect the gene expression of MRPL28 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPL28ENSG00000086504.11332.28860625.91360-0.913503.011501.89730HepG2AATF
MRPL28ENSG00000086504.111006.16560708.859800.505201.801201.30900HepG2BOP1
MRPL28ENSG00000086504.111041.346201234.31950-0.245302.665102.00910HepG2CKAP4
MRPL28ENSG00000086504.11696.37000540.878500.364402.983801.92540HepG2YBX3
MRPL28ENSG00000086504.111186.10630939.370300.336404.761403.82910HepG2DAZAP1
MRPL28ENSG00000086504.111054.65970769.445900.454802.622001.86660HepG2DDX55
MRPL28ENSG00000086504.11678.59300512.262400.405602.458101.53310HepG2DHX30
MRPL28ENSG00000086504.11759.35640531.125800.515603.036702.30530HepG2DNAJC21
MRPL28ENSG00000086504.11770.72320526.401400.549907.818006.79300HepG2DNAJC2
MRPL28ENSG00000086504.111097.164701495.65780-0.447002.054101.50090HepG2EIF4A3
MRPL28ENSG00000086504.11597.199901456.79050-1.286506.505605.48220HepG2EIF4B
MRPL28ENSG00000086504.11685.62030926.86590-0.435004.003703.02960HepG2EIF4G1
MRPL28ENSG00000086504.111089.15170887.856800.294702.014201.31220HepG2EIF4G2
MRPL28ENSG00000086504.111170.636701824.08170-0.6399014.7210013.51140HepG2ETF1
MRPL28ENSG00000086504.111066.307101399.18970-0.392002.662701.90690HepG2FIP1L1
MRPL28ENSG00000086504.111020.520101385.15050-0.440704.429003.44830HepG2FUBP3
MRPL28ENSG00000086504.11766.367301400.22590-0.869605.578104.64690HepG2G3BP1
MRPL28ENSG00000086504.111083.433001487.12700-0.456902.135801.35900HepG2G3BP2
MRPL28ENSG00000086504.111302.20610855.652400.605805.015104.12830HepG2HNRNPL
MRPL28ENSG00000086504.11933.15550592.484900.655206.621405.71920HepG2HNRNPU
MRPL28ENSG00000086504.11960.622401423.13350-0.567003.145602.43140HepG2IGF2BP2
MRPL28ENSG00000086504.111012.819401510.47130-0.576602.988202.30760HepG2MAGOH
MRPL28ENSG00000086504.111199.96830931.485100.365303.945203.03370HepG2NOL12
MRPL28ENSG00000086504.11799.79990444.142500.848506.106704.00020HepG2NOLC1
MRPL28ENSG00000086504.111128.52460706.679300.675203.277502.07850HepG2NONO
MRPL28ENSG00000086504.11740.840101383.79330-0.901405.773904.74410HepG2PABPC4
MRPL28ENSG00000086504.11923.254301450.41510-0.6517013.0714011.90610HepG2PCBP1
MRPL28ENSG00000086504.111011.45790528.451200.9365010.262508.88920HepG2PPIL4
MRPL28ENSG00000086504.11780.47450942.95270-0.272802.305501.59240HepG2PRPF4
MRPL28ENSG00000086504.11437.27510593.42980-0.440502.659301.86710HepG2PRPF8
MRPL28ENSG00000086504.11749.674301475.93070-0.9773025.4976024.15820HepG2PTBP1
MRPL28ENSG00000086504.111445.50610889.222400.7009010.379809.32480HepG2PUF60
MRPL28ENSG00000086504.11708.578901257.65250-0.8277020.6345019.23250HepG2PUS1
MRPL28ENSG00000086504.111146.694001598.30080-0.479106.105305.22830HepG2QKI
MRPL28ENSG00000086504.111197.976301524.59970-0.347803.720403.14300HepG2RBM22
MRPL28ENSG00000086504.11943.835001450.62440-0.620108.213307.10140HepG2RBM25
MRPL28ENSG00000086504.11969.71960606.771300.676304.182602.87560HepG2RCC2
MRPL28ENSG00000086504.111136.590101642.50340-0.531206.943806.15500HepG2NELFE
MRPL28ENSG00000086504.11899.118901529.88800-0.7668017.3780016.05040HepG2RECQL
MRPL28ENSG00000086504.11852.19630667.577100.352201.816201.30780HepG2RPS19
MRPL28ENSG00000086504.11969.02630689.074200.491803.423202.53410HepG2RPS2
MRPL28ENSG00000086504.11768.62230433.050400.827603.979103.01950HepG2RPS3A
MRPL28ENSG00000086504.11982.72600703.451800.482203.207402.04500HepG2RPS5
MRPL28ENSG00000086504.11398.12060587.01160-0.560203.515302.64330HepG2RRP9
MRPL28ENSG00000086504.111228.00390527.640701.2186039.5388037.53470HepG2SAFB2
MRPL28ENSG00000086504.11967.929901536.49250-0.6667013.4246012.27620HepG2SF3B4
MRPL28ENSG00000086504.111343.96940852.718000.656306.412305.41440HepG2SLBP
MRPL28ENSG00000086504.11911.10260615.329600.566209.153208.09150HepG2SMN1
MRPL28ENSG00000086504.111260.371701721.98800-0.450208.115307.38180HepG2SRFBP1
MRPL28ENSG00000086504.11808.527901603.82340-0.9881028.7788027.60810HepG2SRSF1
MRPL28ENSG00000086504.111148.60880878.031500.387405.130404.31910HepG2SRSF5
MRPL28ENSG00000086504.11953.903701304.84570-0.452006.845406.04660HepG2SRSF9
MRPL28ENSG00000086504.111169.663001495.10840-0.354204.814604.17470HepG2SSB
MRPL28ENSG00000086504.111349.45270998.517600.434407.640506.69220HepG2SUCLG1
MRPL28ENSG00000086504.11547.737301441.73970-1.3963020.2505018.93140HepG2TAF15
MRPL28ENSG00000086504.11922.519401324.59190-0.521905.565904.39420HepG2TIA1
MRPL28ENSG00000086504.111013.38330575.752700.8156011.6821010.78070HepG2TIAL1
MRPL28ENSG00000086504.11918.98790580.853400.6618010.962909.95130HepG2TRIM56
MRPL28ENSG00000086504.111335.34950868.806100.620003.751202.71850HepG2TUFM
MRPL28ENSG00000086504.11866.244701196.70110-0.466204.142303.38070HepG2U2AF1
MRPL28ENSG00000086504.111489.110101162.363000.357304.976104.08220HepG2UPF1
MRPL28ENSG00000086504.11690.47760387.917300.831704.401403.00700HepG2XPO5
MRPL28ENSG00000086504.111050.87220753.977400.478903.225502.44530HepG2XRN2
MRPL28ENSG00000086504.11634.96390930.53050-0.551408.320207.26100HepG2ZC3H8
MRPL28ENSG00000086504.112884.550001938.388100.5734015.1418013.92450K562AGGF1
MRPL28ENSG00000086504.112770.521002130.053900.379204.053002.81400K562AKAP8
MRPL28ENSG00000086504.113006.953702016.995000.576008.407807.20680K562AKAP8L
MRPL28ENSG00000086504.111320.768202690.43370-1.0265019.8934018.49050K562AQR
MRPL28ENSG00000086504.112630.042702116.340500.313404.131602.99450K562ATP5C1
MRPL28ENSG00000086504.111566.858801181.497000.407204.515003.27180K562BCLAF1
MRPL28ENSG00000086504.11744.447301018.09640-0.451602.765201.89220K562BOP1
MRPL28ENSG00000086504.111339.99130896.341800.580008.435006.46820K562CSTF2
MRPL28ENSG00000086504.113612.189804402.99400-0.285603.683702.55340K562CELF1
MRPL28ENSG00000086504.111499.509801035.805700.533603.662602.11650K562DDX27
MRPL28ENSG00000086504.112632.740502170.341000.278503.662502.63490K562DKC1
MRPL28ENSG00000086504.111767.448602135.39050-0.272803.195102.43090K562EIF2S2
MRPL28ENSG00000086504.11899.54090523.353800.7813012.0029010.32530K562EIF3G
MRPL28ENSG00000086504.11943.758101309.95750-0.473004.610903.55100K562EIF4A3
MRPL28ENSG00000086504.111183.475301650.24590-0.479703.091801.36610K562ESF1
MRPL28ENSG00000086504.11749.254801319.48930-0.816508.398506.27150K562FKBP4
MRPL28ENSG00000086504.11795.177701101.40680-0.470003.989302.95840K562FMR1
MRPL28ENSG00000086504.11684.12930933.50460-0.448402.282201.45640K562FTO
MRPL28ENSG00000086504.111672.968101362.300900.296303.332202.67700K562FXR1
MRPL28ENSG00000086504.11125.81580438.55280-1.8014019.4334017.10590K562G3BP2
MRPL28ENSG00000086504.112036.967002450.57180-0.266702.378401.38640K562HNRNPA1
MRPL28ENSG00000086504.111003.576201518.67940-0.597707.971107.00600K562HNRNPC
MRPL28ENSG00000086504.111446.21190768.269400.912503.357802.18660K562IGF2BP2
MRPL28ENSG00000086504.112587.262302140.485500.273402.242801.51000K562KIF1C
MRPL28ENSG00000086504.11512.53340882.49510-0.783903.648402.55920K562KRR1
MRPL28ENSG00000086504.111050.69750806.747800.381102.312001.54000K562MAGOH
MRPL28ENSG00000086504.112959.342402397.891400.303403.258202.25750K562MBNL1
MRPL28ENSG00000086504.112686.938503816.43310-0.506306.829505.08510K562MSI2
MRPL28ENSG00000086504.111917.092902295.50310-0.259903.451002.55080K562MTPAP
MRPL28ENSG00000086504.111711.27350994.585700.782804.164502.49900K562NONO
MRPL28ENSG00000086504.112232.145102550.55790-0.192403.028602.25100K562NSUN2
MRPL28ENSG00000086504.112694.195001426.576100.917205.516503.98450K562PABPN1
MRPL28ENSG00000086504.111426.624302094.14590-0.553802.034201.32200K562PCBP3
MRPL28ENSG00000086504.111235.002601606.22090-0.379204.100703.12230K562POLR2G
MRPL28ENSG00000086504.112418.565001761.833600.457003.198402.30610K562PPIG
MRPL28ENSG00000086504.111324.24170783.856300.7564010.083408.87090K562PTBP1
MRPL28ENSG00000086504.113104.843003906.58710-0.331403.155502.28620K562PUF60
MRPL28ENSG00000086504.112735.598304155.68290-0.6032012.8540010.49040K562PUM1
MRPL28ENSG00000086504.113374.136804071.32330-0.271003.873902.73540K562PUM2
MRPL28ENSG00000086504.112673.892402000.203000.418704.557503.88410K562PUS1
MRPL28ENSG00000086504.113005.460701948.981500.6248013.8960012.56130K562RBM15
MRPL28ENSG00000086504.111106.33520751.256900.558302.888002.02560K562RBM22
MRPL28ENSG00000086504.111568.307501242.787900.335502.997201.96330K562RCC2
MRPL28ENSG00000086504.111094.79440790.663700.469402.340801.35370K562NELFE
MRPL28ENSG00000086504.111902.078901431.371200.410104.341502.97510K562SAFB
MRPL28ENSG00000086504.112107.925202516.67860-0.255703.125402.25920K562SF3A3
MRPL28ENSG00000086504.11543.91170982.88650-0.853705.740804.30630K562SF3B1
MRPL28ENSG00000086504.11614.26340455.830500.430303.418702.46420K562SF3B4
MRPL28ENSG00000086504.11315.83190480.56280-0.605603.672101.77510K562SND1
MRPL28ENSG00000086504.111479.263001178.090200.328302.535801.56570K562SRFBP1
MRPL28ENSG00000086504.112118.679302578.38520-0.283304.899403.69920K562SRPK2
MRPL28ENSG00000086504.111212.27840768.516100.657503.811302.98820K562SRSF1
MRPL28ENSG00000086504.111016.72310698.254600.542003.164302.02150K562SRSF4
MRPL28ENSG00000086504.111179.57700725.992600.700106.449804.73340K562SRSF5
MRPL28ENSG00000086504.11208.98750430.47560-1.042503.004001.45640K562TAF15
MRPL28ENSG00000086504.111462.88350777.625600.911607.152705.95750K562TARDBP
MRPL28ENSG00000086504.11298.38720456.95420-0.614904.455202.38840K562TBRG4
MRPL28ENSG00000086504.111225.84960750.150500.708403.519102.57870K562TIA1
MRPL28ENSG00000086504.111303.68920736.506200.823703.420502.17930K562TRA2A
MRPL28ENSG00000086504.11299.08490438.88740-0.553304.189003.20390K562U2AF2
MRPL28ENSG00000086504.112328.049002704.40680-0.216202.858902.12840K562UPF1
MRPL28ENSG00000086504.111881.432002314.08170-0.298602.865801.97340K562WDR3
MRPL28ENSG00000086504.112363.895603030.76140-0.358503.599902.59080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPL28 is not available on ENCORE database.





3 RBPs can affect the splicing of MRPL28 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSMRPL28ENSG00000086504.11chr16-420484420509420498420509419930420225-0.075000.000120.05928shorterK562WDR3
RIMRPL28ENSG00000086504.11chr16-4185004192204185004186354190674192200.057000.000000.00003includedK562SF3B4
RIMRPL28ENSG00000086504.11chr16-4185004192204185004186354190674192200.090000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPL28 is not avaliable on ENCORE database.