MESDC2

General Information

Gene Name       : MESDC2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MESDC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MESDC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MESDC2 RNA is bound by 22 proteins.  







eCLIP assay for MESDC2 is not avaliable on ENCORE database.





22 proteins are bound to MESDC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr158127119081271300-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.825337.21028HepG2IGF2BP3
chr158126859081268639-3'-UTR,intron-Distal4.387683.95192HepG2UPF1
chr158127120281271271-3'-UTR,intron-Distal,intron-Proximal3.968824.45619HepG2UPF1
chr158127064481270739-3'-UTR,intron-Distal3.5552610.28191HepG2LARP4
chr158127064881270743-3'-UTR,intron-Distal3.3954712.20450HepG2DDX55
chr158127144581271566-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.3001610.46226HepG2LARP4
chr158127063781270685-3'-UTR,intron-Distal3.016083.18141HepG2FUBP3
chr158127066781270742-3'-UTR,intron-Distal4.453804.43128HepG2TIA1
chr158127046881270507-3'-UTR,intron-Distal4.191533.19668HepG2UPF1
chr158127146581271565-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.022158.06090HepG2SND1
chr158127149281271563-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.700999.11498HepG2RPS3
chr158127143981271588-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.176526.34529HepG2GRSF1
chr158127104881271115-3'-UTR,intron-Distal5.105426.37221HepG2LARP4
chr158126992781269981-3'-UTR,intron-Distal4.422705.09917HepG2LIN28B
chr158127102781271088-3'-UTR,intron-Distal3.796973.97153HepG2UPF1
chr158127103481271080-3'-UTR,intron-Distal3.198703.61668HepG2IGF2BP1
chr158127062581270742-3'-UTR,intron-Distal6.3402660.27722K562PABPC4
chr158127146181271567-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2128110.66463HepG2UPF1
chr158127060681270682-3'-UTR,intron-Distal4.719995.45041K562PUM2
chr158127145981271562-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.181815.56943HepG2ZNF800
chr158128198881282136-5'-UTR,CDS,intron-Distal3.099783.06472HepG2UCHL5
chr158128207481282143-5'-UTR,CDS,intron-Distal,intron-Proximal4.5484051.54598HepG2DDX3X
chr158128200581282140-5'-UTR,CDS,intron-Distal,intron-Proximal4.0537210.65333K562DDX3X
chr158127167881271747-CDS,intron-Distal4.064603.72865HepG2LIN28B
chr158127445781274523-CDS,intron-Distal3.814634.84058HepG2LIN28B
chr158127434581274522-CDS,intron-Distal3.407785.65349K562UCHL5
chr158128191881282001-CDS,intron-Distal4.3158610.95751HepG2GRWD1
chr158127173281271816-CDS,intron-Distal6.3302218.95514HepG2SND1
chr158128200281282074-CDS,intron-Distal3.3593438.59208HepG2DDX3X
chr158128198581282098-CDS,intron-Distal3.333623.02345K562ZNF622
chr158127174781271798-CDS,intron-Distal3.162426.88281HepG2LIN28B
chr158127443681274524-CDS,intron-Distal,intron-Proximal3.090046.07026HepG2GRWD1
chr158128185681281945-CDS,intron-Distal5.589837.70650HepG2PRPF8
chr158127442881274512-CDS,intron-Distal3.452184.37103HepG2SND1
chr158128201081282115-CDS,intron-Distal3.9138712.62823HepG2RPS3
chr158127430081274440-CDS,intron-Distal3.196427.17439HepG2BCLAF1
chr158127167581271732-CDS,intron-Distal3.862136.23251HepG2SND1
chr158128174881281847-intron-Distal5.066845.61339K562QKI
chr158128170881281878-intron-Distal4.0956514.71332HepG2PCBP2
chr158128172481281826-intron-Distal4.1973312.72659HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MESDC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MESDC2 is not available on ENCORE database.

  • 113 RBPs can affect the levels of MESDC2.  








The Knockdown/knockout RNA-Seq assay for MESDC2 is not available on ENCORE database.





113 RBPs can affect the gene expression of MESDC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MESDC2ENSG00000117899.62423.230103233.72570-0.416303.172002.16160HepG2ABCF1
MESDC2ENSG00000117899.61395.828401977.48060-0.502505.126403.83060HepG2ADAR
MESDC2ENSG00000117899.63881.449003051.020200.347202.363501.86740HepG2AKAP1
MESDC2ENSG00000117899.62045.055102467.15220-0.270703.623402.75850HepG2AKAP8L
MESDC2ENSG00000117899.63383.908502920.749100.212302.517601.85750HepG2AUH
MESDC2ENSG00000117899.62956.157003609.24250-0.288002.500601.92830HepG2BOP1
MESDC2ENSG00000117899.63049.919102423.259500.331703.626102.22810HepG2BUD13
MESDC2ENSG00000117899.63088.802602398.413500.364903.085002.27020HepG2CIRBP
MESDC2ENSG00000117899.61872.044802455.04870-0.391108.604307.55710HepG2CKAP4
MESDC2ENSG00000117899.62729.781803313.45410-0.279602.152901.53690HepG2CPSF6
MESDC2ENSG00000117899.61086.142301422.00650-0.388702.520001.48970HepG2CSTF2
MESDC2ENSG00000117899.61730.212003169.37270-0.8732029.4957027.86430HepG2CELF1
MESDC2ENSG00000117899.61924.307402271.15000-0.239103.372902.46290HepG2DDX19B
MESDC2ENSG00000117899.61281.182002085.54180-0.7029010.994609.74630HepG2DDX21
MESDC2ENSG00000117899.61445.327302117.59200-0.551003.766302.29510HepG2DDX27
MESDC2ENSG00000117899.62401.958502922.64580-0.283101.859301.33590HepG2DDX3X
MESDC2ENSG00000117899.61211.703402262.89810-0.901109.992208.63390HepG2DDX55
MESDC2ENSG00000117899.63207.265802510.615100.353202.360601.78630HepG2DDX6
MESDC2ENSG00000117899.61171.907901991.22460-0.7648018.3058016.66070HepG2DNAJC21
MESDC2ENSG00000117899.61599.848601973.64740-0.302905.050804.21150HepG2DNAJC2
MESDC2ENSG00000117899.61562.218001968.96040-0.333803.450002.26110HepG2EIF3G
MESDC2ENSG00000117899.61025.130302596.90990-1.3410019.4215017.71450HepG2EIF4B
MESDC2ENSG00000117899.61514.515403220.68910-1.0885024.4257022.23940HepG2EIF4G2
MESDC2ENSG00000117899.61413.923401987.05590-0.490906.127704.53970HepG2FASTKD2
MESDC2ENSG00000117899.62344.588301883.653800.315702.688401.43800HepG2FKBP4
MESDC2ENSG00000117899.62131.459302691.11090-0.336402.550701.88540HepG2FXR1
MESDC2ENSG00000117899.61604.146302496.39850-0.638006.850605.82350HepG2G3BP1
MESDC2ENSG00000117899.61164.429101515.52710-0.380202.817501.91080HepG2GEMIN5
MESDC2ENSG00000117899.62735.518403755.98400-0.457404.097603.33110HepG2GPKOW
MESDC2ENSG00000117899.61504.538402010.30110-0.418104.572003.76960HepG2HNRNPA1
MESDC2ENSG00000117899.61364.836103132.00080-1.1984054.7983051.75990HepG2HNRNPA2B1
MESDC2ENSG00000117899.61616.484902236.09030-0.468105.280704.34680HepG2HNRNPC
MESDC2ENSG00000117899.62138.361902696.77600-0.334705.133104.19380HepG2HNRNPF
MESDC2ENSG00000117899.62856.445503584.41150-0.327502.381601.79260HepG2HNRNPLL
MESDC2ENSG00000117899.61926.184402221.30650-0.205702.343901.78220HepG2HNRNPU
MESDC2ENSG00000117899.61870.548702655.56630-0.505607.591806.44860HepG2IGF2BP1
MESDC2ENSG00000117899.61701.419602244.76550-0.399808.727807.00550HepG2KIF1C
MESDC2ENSG00000117899.61704.615304297.79930-1.3342011.597809.90100HepG2LARP4
MESDC2ENSG00000117899.61961.183302692.05040-0.457004.066103.27270HepG2MAGOH
MESDC2ENSG00000117899.61951.321102770.88450-0.505904.693203.88160HepG2NCBP2
MESDC2ENSG00000117899.61586.867602467.65170-0.637007.150405.99990HepG2PABPC4
MESDC2ENSG00000117899.61983.562902357.95970-0.249403.100302.46310HepG2PCBP1
MESDC2ENSG00000117899.61543.531401981.22750-0.360204.745303.80630HepG2PPIL4
MESDC2ENSG00000117899.61068.131502091.75210-0.9696031.6039029.55460HepG2PRPF4
MESDC2ENSG00000117899.61075.865301746.21810-0.698707.122005.89670HepG2PRPF8
MESDC2ENSG00000117899.61941.881302399.37850-0.305203.884503.26080HepG2PTBP1
MESDC2ENSG00000117899.62790.075203424.35340-0.295506.715405.87560HepG2PUM1
MESDC2ENSG00000117899.61884.562902501.33510-0.408508.560007.57740HepG2PUS1
MESDC2ENSG00000117899.61797.713702598.44470-0.531509.242808.19860HepG2QKI
MESDC2ENSG00000117899.61025.191902281.50430-1.1541010.569409.25790HepG2RAVER1
MESDC2ENSG00000117899.61250.358202802.87480-1.1646043.9176042.32620HepG2RBM22
MESDC2ENSG00000117899.61966.114102358.30900-0.262402.211901.60340HepG2RBM25
MESDC2ENSG00000117899.61913.748402670.22280-0.480609.718008.81620HepG2NELFE
MESDC2ENSG00000117899.61830.311002487.04960-0.442308.503207.51170HepG2RECQL
MESDC2ENSG00000117899.61910.496602904.91160-0.604508.660907.55690HepG2RPLP0
MESDC2ENSG00000117899.61329.034701656.22490-0.317502.749102.13590HepG2RPS19
MESDC2ENSG00000117899.61569.797002156.48690-0.458104.488103.48250HepG2RPS2
MESDC2ENSG00000117899.61537.154501179.824600.381602.082601.38790HepG2RPS3A
MESDC2ENSG00000117899.6906.398301727.42760-0.9304010.423609.04500HepG2RRP9
MESDC2ENSG00000117899.61627.815301978.17050-0.281204.074603.31860HepG2SAFB2
MESDC2ENSG00000117899.61933.590702497.94370-0.369506.145605.32260HepG2SF3B4
MESDC2ENSG00000117899.61115.163702225.61190-0.996905.416603.25550HepG2SLTM
MESDC2ENSG00000117899.62836.794103165.71810-0.158301.890601.45270HepG2SRFBP1
MESDC2ENSG00000117899.62057.646102649.45240-0.364705.956804.99800HepG2SRSF7
MESDC2ENSG00000117899.63065.812403622.30270-0.240604.246103.50500HepG2SUCLG1
MESDC2ENSG00000117899.62797.190702205.429500.342804.032502.90800HepG2SUPT6H
MESDC2ENSG00000117899.61693.956902252.84690-0.411402.501001.85400HepG2SUPV3L1
MESDC2ENSG00000117899.61985.916202343.73250-0.239002.363101.83820HepG2TAF15
MESDC2ENSG00000117899.61694.074103493.88850-1.0443023.2124021.50330HepG2TARDBP
MESDC2ENSG00000117899.61269.108602158.40670-0.7662016.0408015.01570HepG2TIAL1
MESDC2ENSG00000117899.62475.462603335.68830-0.430303.745602.76540HepG2UBE2L3
MESDC2ENSG00000117899.63243.049402851.432100.185602.310701.66350HepG2UPF1
MESDC2ENSG00000117899.61639.249502217.67570-0.436003.166302.39200HepG2XRN2
MESDC2ENSG00000117899.61816.810202064.23740-0.184202.102501.50480HepG2ZC3H8
MESDC2ENSG00000117899.61697.657002279.02700-0.424902.663601.39560HepG2ZRANB2
MESDC2ENSG00000117899.6933.67290723.019100.368802.692201.52770K562AARS
MESDC2ENSG00000117899.61619.744002303.55420-0.508103.692702.25350K562ABCF1
MESDC2ENSG00000117899.6552.64460984.78890-0.8335015.5255014.29380K562AGGF1
MESDC2ENSG00000117899.6778.449901082.04740-0.475104.313903.02840K562AKAP8
MESDC2ENSG00000117899.6714.440901024.69620-0.520304.909204.02910K562AKAP8L
MESDC2ENSG00000117899.62350.630201759.071900.418103.347901.97840K562APOBEC3C
MESDC2ENSG00000117899.6930.265201624.07780-0.803905.094004.34030K562AQR
MESDC2ENSG00000117899.6721.87070910.18840-0.334403.263302.21830K562BCLAF1
MESDC2ENSG00000117899.61366.691402179.58110-0.673404.314702.94320K562CNOT7
MESDC2ENSG00000117899.61502.719401795.56280-0.256902.476001.43300K562CPEB4
MESDC2ENSG00000117899.6961.390301594.50490-0.729903.018202.19980K562CPSF6
MESDC2ENSG00000117899.6515.09700690.51360-0.422803.424702.22990K562CSTF2
MESDC2ENSG00000117899.61162.600502450.30710-1.0756010.435608.60870K562CELF1
MESDC2ENSG00000117899.6814.049901114.15950-0.452805.837004.03530K562DDX21
MESDC2ENSG00000117899.62235.366201858.251000.266503.433902.71860K562DDX47
MESDC2ENSG00000117899.61824.669201482.312400.299702.002301.37370K562EIF2S2
MESDC2ENSG00000117899.6940.01770778.786400.271402.072401.37590K562EIF3G
MESDC2ENSG00000117899.6983.10350600.319600.711508.338106.91420K562EIF4A3
MESDC2ENSG00000117899.6411.75540540.58710-0.392703.028801.80410K562EIF4B
MESDC2ENSG00000117899.6748.49710985.09160-0.396303.462402.02400K562EXOSC5
MESDC2ENSG00000117899.6573.27610833.16840-0.539405.026402.81320K562FASTKD2
MESDC2ENSG00000117899.6530.37770688.51400-0.376502.649801.33830K562FUS
MESDC2ENSG00000117899.61185.79230624.301100.9254019.4023017.91590K562FXR1
MESDC2ENSG00000117899.6585.33430800.97770-0.452503.767802.06490K562G3BP1
MESDC2ENSG00000117899.6864.585501346.34230-0.6390010.605508.51180K562GLRX3
MESDC2ENSG00000117899.6952.889801522.46590-0.676002.682001.89890K562GPKOW
MESDC2ENSG00000117899.6804.175701012.71680-0.332602.623801.57820K562HNRNPA1
MESDC2ENSG00000117899.6580.30050791.58810-0.447902.004001.48450K562HNRNPC
MESDC2ENSG00000117899.62088.189501361.718600.616703.460702.40910K562HNRNPM
MESDC2ENSG00000117899.6576.49200837.81550-0.539303.648402.40790K562IGF2BP2
MESDC2ENSG00000117899.6728.181901087.53360-0.578703.123202.24280K562KIF1C
MESDC2ENSG00000117899.6820.535601040.97660-0.343302.320001.36430K562MAK16
MESDC2ENSG00000117899.6861.706601486.05180-0.786203.317202.35740K562METAP2
MESDC2ENSG00000117899.61018.956301415.50550-0.474207.589606.30730K562MTPAP
MESDC2ENSG00000117899.6905.645901572.74200-0.7963025.1652023.26370K562NSUN2
MESDC2ENSG00000117899.6501.395401129.98220-1.172303.244802.14810K562PABPN1
MESDC2ENSG00000117899.61487.375101879.37720-0.337502.224501.49140K562PPIG
MESDC2ENSG00000117899.6932.68610719.494100.374302.128901.46750K562PRPF8
MESDC2ENSG00000117899.61330.65740855.447300.637309.160207.99900K562PTBP1
MESDC2ENSG00000117899.6554.448401016.37030-0.8743011.3434010.29270K562PUS1
MESDC2ENSG00000117899.6333.40510527.30820-0.661403.367001.77210K562RAVER1
MESDC2ENSG00000117899.6678.40920990.17310-0.545506.769805.86820K562RBM15
MESDC2ENSG00000117899.6671.02280399.582300.747806.020904.47450K562RPS3
MESDC2ENSG00000117899.61340.824501985.33510-0.566303.266901.59660K562SBDS
MESDC2ENSG00000117899.6981.458801551.91240-0.6610013.0123011.34960K562SF3A3
MESDC2ENSG00000117899.6395.42800574.95610-0.540004.760503.62770K562SF3B4
MESDC2ENSG00000117899.6449.00410592.63890-0.400402.561001.34980K562SLBP
MESDC2ENSG00000117899.6906.083701589.96930-0.8113023.1156020.83790K562SRPK2
MESDC2ENSG00000117899.61049.61520838.626600.323702.531401.85020K562SRSF1
MESDC2ENSG00000117899.6714.12740994.33090-0.477506.128604.37780K562SRSF7
MESDC2ENSG00000117899.6572.53100803.33200-0.488605.015803.20440K562SSB
MESDC2ENSG00000117899.61366.193801987.14370-0.540504.069302.49680K562STAU1
MESDC2ENSG00000117899.61373.84230964.029200.511006.505805.23700K562SYNCRIP
MESDC2ENSG00000117899.6381.24410576.32540-0.596204.568102.47290K562TBRG4
MESDC2ENSG00000117899.61435.513001937.38360-0.432502.798001.40920K562TRIP6
MESDC2ENSG00000117899.61384.559901655.80850-0.258102.797801.51960K562TROVE2
MESDC2ENSG00000117899.6317.82640536.04610-0.754105.614403.94070K562U2AF1
MESDC2ENSG00000117899.6591.312801030.33890-0.801104.366602.60780K562UTP18
MESDC2ENSG00000117899.6787.997201426.92190-0.8566015.0774013.00070K562WDR3
MESDC2ENSG00000117899.61238.044701829.87820-0.563703.076802.16240K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MESDC2 is not available on ENCORE database.





1 RBPs can affect the splicing of MESDC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMESDC2ENSG00000117899.6chr15-8127950881279558812742908127452381281919812822190.084000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MESDC2 is not avaliable on ENCORE database.