LMF2

General Information

Gene Name       : LMF2
Gene ID             : ENSG00000100258.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LMF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LMF2ENSG00000100258.170.282.281.28ENCSR000AEF
HepG2LMF2ENSG00000100258.1730.353.4516.90ENCSR985KAT
K562LMF2ENSG00000100258.179.822.155.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LMF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LMF2 RNA is bound by 19 proteins.  







eCLIP assay for LMF2 is not avaliable on ENCORE database.





19 proteins are bound to LMF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr225094163450941741-3'-UTR,intron-Distal,intron-Proximal4.427137.45053HepG2LARP4
chr225094161750941740-3'-UTR,intron-Distal,intron-Proximal4.5396916.38595HepG2UPF1
chr225094155650941696-3'-UTR,intron-Distal,intron-Proximal5.288568.34384HepG2AKAP1
chr225094148150941609-3'-UTR,intron-Distal,intron-Proximal3.554988.29911HepG2UPF1
chr225094174150941832-3'-UTR,CDS,intron-Distal3.224965.39571HepG2LARP4
chr225094174250941827-3'-UTR,CDS,intron-Distal4.1459611.77596HepG2UPF1
chr225094596850946014-5'-UTR,CDS,intron-Distal5.3649913.44390HepG2PRPF8
chr225094550550945565-5'-UTR,intron-Distal,intron-Proximal5.3020420.79930HepG2RBFOX2
chr225094551750945560-5'-UTR,intron-Distal,intron-Proximal4.530824.58968K562PRPF8
chr225094549650945571-5'-UTR,intron-Distal,intron-Proximal3.897336.70492K562RBFOX2
chr225094603550946116-5'-UTR,CDS,intron-Distal,intron-Proximal4.1135712.55615HepG2DDX3X
chr225094286450942935-CDS,intron-Distal,intron-Proximal3.3000128.84555HepG2PRPF8
chr225094224550942296-CDS,intron-Distal3.291305.80035HepG2PPIG
chr225094521150945242-CDS,intron-Distal3.286193.65584HepG2SND1
chr225094229950942333-CDS,intron-Distal4.479703.57831HepG2SND1
chr225094225250942309-CDS,intron-Distal4.5917712.82650HepG2RPS3
chr225094282350942882-CDS,intron-Distal,intron-Proximal4.7159211.79214HepG2AQR
chr225094355550943588-CDS,intron-Distal,intron-Proximal3.348516.22359HepG2BUD13
chr225094307050943134-CDS,intron-Distal,intron-Proximal4.457517.77650HepG2SND1
chr225094224550942299-CDS,intron-Distal3.724343.41356HepG2SND1
chr225094357350943618-CDS,intron-Distal,intron-Proximal4.9089111.56048K562EFTUD2
chr225094463750944693-CDS,intron-Distal,intron-Proximal4.581716.30573HepG2SF3B4
chr225094355550943634-CDS,intron-Distal,intron-Proximal4.475088.04968HepG2EFTUD2
chr225094284850942948-CDS,intron-Distal,intron-Proximal3.7836412.17288K562EFTUD2
chr225094361250943681-CDS,intron-Distal,intron-Proximal3.9043012.22234HepG2PRPF8
chr225094286450942925-CDS,intron-Distal,intron-Proximal3.0736710.56162HepG2PPIG
chr225094489250944950-CDS,intron-Distal,intron-Proximal3.536868.23725K562AQR
chr225094411150944201-CDS,intron-Distal,intron-Proximal3.952017.35476HepG2GRWD1
chr225094283250942919-CDS,intron-Distal,intron-Proximal4.7385022.51249HepG2BUD13
chr225094277150942831-CDS,intron-Distal4.181907.59025HepG2SND1
chr225094491250944956-CDS,intron-Distal,intron-Proximal3.580594.23459K562PRPF8
chr225094355250943589-CDS,intron-Distal,intron-Proximal3.533938.11126HepG2PRPF8
chr225094355650943630-CDS,intron-Distal,intron-Proximal4.355646.10653K562SF3B4
chr225094282050942944-CDS,intron-Distal,intron-Proximal3.754258.09589HepG2PRPF4
chr225094282450942931-CDS,intron-Distal,intron-Proximal4.2845912.40248K562AQR
chr225094354350943573-CDS,intron-Distal,intron-Proximal5.167968.80869K562EFTUD2
chr225094191850941989-CDS,intron-Distal3.668006.16113HepG2SND1
chr225094286750942925-CDS,intron-Distal,intron-Proximal3.113955.12902K562SF3B4
chr225094285850942911-CDS,intron-Distal,intron-Proximal4.255783.71613K562UCHL5
chr225094491750945001-CDS,intron-Distal,intron-Proximal4.574994.59919HepG2AQR
chr225094284150942930-CDS,intron-Distal,intron-Proximal3.8268815.54713HepG2EFTUD2
chr225094284050942927-CDS,intron-Distal,intron-Proximal4.2309217.51242K562BUD13
chr225094286150942932-CDS,intron-Distal,intron-Proximal3.822195.03137K562GTF2F1
chr225094355350943582-CDS,intron-Distal,intron-Proximal4.238634.67599HepG2SND1
chr225094279550942907-CDS,intron-Distal,intron-Proximal3.245723.50122K562DDX55
chr225094281450942928-CDS,intron-Distal,intron-Proximal6.1607423.03441K562DDX24
chr225094334050943401-CDS,intron-Distal,intron-Proximal3.194903.72269HepG2SND1
chr225094491850945023-CDS,intron-Distal,intron-Proximal6.0823110.29365K562EFTUD2
chr225094230950942334-CDS,intron-Distal,intron-Proximal3.876874.92654HepG2RPS3
chr225094567450945801-intron-Distal,intron-Proximal5.288967.66822HepG2PRPF4
chr225094495050945001-intron-Distal,intron-Proximal3.360595.75231K562AQR
chr225094557050945620-intron-Distal,intron-Proximal3.175554.88392HepG2RBFOX2
chr225094556550945626-intron-Distal,intron-Proximal3.354626.11414K562BUD13
chr225094397350944027-intron-Distal,intron-Proximal3.870983.01266HepG2SF3B4
chr225094237550942476-intron-Distal,intron-Proximal4.283894.07596K562GTF2F1
chr225094582150945897-intron-Distal4.299663.70701HepG2PRPF4
chr225094557450945621-intron-Distal,intron-Proximal3.337525.03897K562PRPF8
chr225094568650945800-intron-Distal,intron-Proximal5.110549.27533K562RBFOX2
chr225094571350945775-intron-Distal,intron-Proximal4.598034.78571K562UCHL5
chr225094497450945020-intron-Distal,intron-Proximal4.688335.80866K562BUD13
chr225094493850945005-intron-Distal,intron-Proximal4.036823.49140K562RBFOX2
chr225094497950945037-intron-Distal,intron-Proximal3.227758.18981HepG2PRPF8
chr225094566550945742-intron-Distal,intron-Proximal3.6666410.74455HepG2RBFOX2
chr225094574250945798-intron-Distal,intron-Proximal3.977346.55430HepG2RBFOX2
chr225094358750943647-intron-Distal,intron-Proximal4.357984.24670HepG2SF3B4
chr225094566650945713-intron-Distal,intron-Proximal3.047834.00731K562UCHL5
chr225094567850945781-intron-Distal,intron-Proximal4.414168.54394K562BUD13
chr225094288250942942-intron-Distal,intron-Proximal3.7530610.31334HepG2AQR
chr225094493150945029-intron-Distal,intron-Proximal6.3808114.81270HepG2EFTUD2
chr225094574650945783-intron-Distal,intron-Proximal5.239255.73530K562DDX24
chr225094559850945637-intron-Distal,intron-Proximal3.173473.90917HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LMF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LMF2 is not available on ENCORE database.

  • 113 RBPs can affect the levels of LMF2.  








The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.





113 RBPs can affect the gene expression of LMF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LMF2ENSG00000100258.131440.438601100.236900.388605.927505.10380HepG2ACO1
LMF2ENSG00000100258.13953.28920624.878200.609204.328203.03530HepG2AKAP8
LMF2ENSG00000100258.13911.77990439.445201.052902.611701.70340HepG2BCCIP
LMF2ENSG00000100258.131066.67590825.111600.370402.697402.10580HepG2BOP1
LMF2ENSG00000100258.13892.179901099.89950-0.302003.501202.76880HepG2CKAP4
LMF2ENSG00000100258.13969.85090757.466200.356502.346601.70660HepG2CPSF6
LMF2ENSG00000100258.131389.736501038.570500.420102.325101.31390HepG2CPSF7
LMF2ENSG00000100258.13381.82290224.418100.766606.684005.11270HepG2YBX3
LMF2ENSG00000100258.13891.27390485.268400.8770015.8231014.53430HepG2CELF1
LMF2ENSG00000100258.13688.35670521.766600.399704.056403.18670HepG2DAZAP1
LMF2ENSG00000100258.13355.46530224.740100.661404.698403.20930HepG2DDX1
LMF2ENSG00000100258.13741.15750432.135500.778202.256201.55110HepG2DDX55
LMF2ENSG00000100258.131776.65110796.536501.157202.507101.91720HepG2DDX6
LMF2ENSG00000100258.13640.09340220.374401.5382012.0079010.62420HepG2DNAJC21
LMF2ENSG00000100258.13597.00330218.410001.4506032.6223030.62430HepG2DNAJC2
LMF2ENSG00000100258.13709.62160493.112900.525004.101203.12130HepG2EIF4G2
LMF2ENSG00000100258.13481.75850913.08660-0.9224013.5789011.89400HepG2FUBP3
LMF2ENSG00000100258.13632.35450349.631600.854803.683502.50300HepG2GNB2L1
LMF2ENSG00000100258.131530.97090858.561600.834405.456904.57800HepG2GPKOW
LMF2ENSG00000100258.13461.07840214.607201.103205.239903.29580HepG2HNRNPA0
LMF2ENSG00000100258.13894.86300597.030800.583808.106206.95850HepG2HNRNPF
LMF2ENSG00000100258.131005.53670475.284601.0810029.3181027.40640HepG2HNRNPL
LMF2ENSG00000100258.131135.74140819.348900.471003.666902.95210HepG2HNRNPLL
LMF2ENSG00000100258.13502.10200245.832101.0302012.6465011.42840HepG2HNRNPU
LMF2ENSG00000100258.13994.78240587.903100.7587011.054809.70220HepG2IGF2BP1
LMF2ENSG00000100258.13454.90550251.110400.857104.345803.44690HepG2ILF2
LMF2ENSG00000100258.13550.18240241.769501.186205.960004.10890HepG2KHDRBS1
LMF2ENSG00000100258.131222.536601005.693400.281603.404102.27300HepG2KIF1C
LMF2ENSG00000100258.131612.480501008.552100.676902.113901.39600HepG2LARP4
LMF2ENSG00000100258.13593.07760342.705300.791205.145303.59830HepG2LARP7
LMF2ENSG00000100258.13612.22680359.598800.767604.343602.82280HepG2LIN28B
LMF2ENSG00000100258.13553.90470309.836000.838005.073203.14140HepG2NIP7
LMF2ENSG00000100258.13913.05370517.383600.819404.464503.49740HepG2NOL12
LMF2ENSG00000100258.13796.40780293.881901.438207.233804.91280HepG2NOLC1
LMF2ENSG00000100258.13961.90110397.163301.276107.474305.66510HepG2NONO
LMF2ENSG00000100258.13515.16310231.594301.153304.457403.31530HepG2PABPC1
LMF2ENSG00000100258.13468.56510243.339400.945202.682801.84620HepG2PARN
LMF2ENSG00000100258.13833.92500219.263701.9272012.9725011.44310HepG2PPIL4
LMF2ENSG00000100258.131148.09000885.613600.374402.583402.05160HepG2PTBP1
LMF2ENSG00000100258.131204.13360493.892301.2856026.9372025.33760HepG2PUF60
LMF2ENSG00000100258.13997.46730524.293700.9278023.2005021.82490HepG2PUM1
LMF2ENSG00000100258.131068.97420523.907501.028702.847902.16820HepG2PUM2
LMF2ENSG00000100258.131390.720101120.648300.311403.952003.24050HepG2PUS1
LMF2ENSG00000100258.13644.00520959.02850-0.574506.629605.72310HepG2QKI
LMF2ENSG00000100258.13719.190401130.90060-0.653004.263103.65590HepG2RBM22
LMF2ENSG00000100258.131299.85320870.422700.578502.354501.72680HepG2RBM25
LMF2ENSG00000100258.13872.38250413.276701.0778010.849508.86150HepG2RBM27
LMF2ENSG00000100258.13545.79620335.601800.701502.573701.55200HepG2RCC2
LMF2ENSG00000100258.131303.56710985.558900.403405.300304.59040HepG2NELFE
LMF2ENSG00000100258.13829.36900381.098801.1217013.2057011.55880HepG2RPS2
LMF2ENSG00000100258.13712.63320254.738201.4840012.1055010.48670HepG2RPS3A
LMF2ENSG00000100258.13721.81410389.075000.891506.796805.12290HepG2RPS5
LMF2ENSG00000100258.13469.63820218.928001.1010011.4287010.25810HepG2SAFB2
LMF2ENSG00000100258.13470.55050239.867400.972003.183201.78610HepG2SART3
LMF2ENSG00000100258.13481.98550810.94430-0.750606.493805.44970HepG2SF3B1
LMF2ENSG00000100258.131098.64970473.576401.2140027.3898025.63080HepG2SLBP
LMF2ENSG00000100258.13532.09330255.313101.0593016.8724015.48850HepG2SMN1
LMF2ENSG00000100258.13779.06410360.405401.112002.632601.69990HepG2SMNDC1
LMF2ENSG00000100258.13385.22050902.33540-1.2280011.6016010.01700HepG2SNRNP70
LMF2ENSG00000100258.13805.272801277.24720-0.665504.158903.58130HepG2SRFBP1
LMF2ENSG00000100258.13561.42400962.34780-0.7775011.5125010.69010HepG2SRSF1
LMF2ENSG00000100258.13600.23980872.71900-0.540003.146602.06980HepG2SRSF3
LMF2ENSG00000100258.131330.43210487.652901.4479050.7052048.50420HepG2SRSF5
LMF2ENSG00000100258.13907.98360586.569400.630306.111005.14090HepG2SRSF7
LMF2ENSG00000100258.13639.16370782.95460-0.292702.408601.88660HepG2SRSF9
LMF2ENSG00000100258.13398.64310221.754800.846002.423701.40330HepG2STIP1
LMF2ENSG00000100258.131196.97700554.590401.1098033.0682031.33140HepG2SUCLG1
LMF2ENSG00000100258.131153.05760859.829800.423202.872001.91340HepG2SUPT6H
LMF2ENSG00000100258.13315.71890865.10330-1.4542019.1942017.90770HepG2TAF15
LMF2ENSG00000100258.131199.10710798.837800.585905.946904.94180HepG2TARDBP
LMF2ENSG00000100258.13884.57520238.894801.8885010.327809.46850HepG2TIAL1
LMF2ENSG00000100258.13844.63970241.005701.8092013.6468012.53070HepG2TRIM56
LMF2ENSG00000100258.131508.89210482.520301.644706.470005.04690HepG2TUFM
LMF2ENSG00000100258.13559.963901089.56360-0.960305.122104.28180HepG2U2AF1
LMF2ENSG00000100258.131297.30510510.745701.344704.581503.48590HepG2UBE2L3
LMF2ENSG00000100258.13408.31940253.984700.684902.169201.49670HepG2UCHL5
LMF2ENSG00000100258.131403.619401138.886400.301402.298601.65260HepG2UPF1
LMF2ENSG00000100258.13717.595001099.54460-0.615703.631402.96100HepG2UTP3
LMF2ENSG00000100258.13512.26140228.195801.166505.056203.55850HepG2XPO5
LMF2ENSG00000100258.13779.66730423.365600.880903.318602.52950HepG2XRN2
LMF2ENSG00000100258.132033.297701252.552000.6989023.1107021.91300HepG2ZNF622
LMF2ENSG00000100258.13858.29220607.190600.499206.363105.55440K562AGGF1
LMF2ENSG00000100258.13895.82430667.275300.424803.771802.58400K562AKAP8
LMF2ENSG00000100258.13408.37970234.716300.798903.715502.59460K562BCLAF1
LMF2ENSG00000100258.13219.83380130.407600.753303.436801.99780K562CIRBP
LMF2ENSG00000100258.13796.63160564.571700.496705.090503.55440K562CPEB4
LMF2ENSG00000100258.13335.25020248.273600.433202.110001.41600K562CPSF6
LMF2ENSG00000100258.13359.24270178.067501.012408.576906.59050K562CSTF2
LMF2ENSG00000100258.13701.93460584.088200.265101.929401.36650K562DDX47
LMF2ENSG00000100258.13576.01640410.360000.489104.390202.62450K562DDX6
LMF2ENSG00000100258.13342.50230160.297601.095302.590001.71030K562EFTUD2
LMF2ENSG00000100258.13730.19160417.609300.806004.881003.96250K562EIF2S2
LMF2ENSG00000100258.13147.0378076.997100.933204.094303.13580K562EIF3G
LMF2ENSG00000100258.13362.52630204.121100.828605.690302.97410K562EIF3H
LMF2ENSG00000100258.13401.14500303.425900.402702.151701.40160K562FIP1L1
LMF2ENSG00000100258.138.8944050.36900-2.501603.841202.97760K562G3BP2
LMF2ENSG00000100258.13396.24980237.043700.741205.284604.19490K562GPKOW
LMF2ENSG00000100258.13411.93550121.798401.757804.009902.68020K562IGF2BP2
LMF2ENSG00000100258.13247.37050123.834900.998202.451701.34910K562IGF2BP3
LMF2ENSG00000100258.13269.57250444.34310-0.721003.135101.60850K562ILF2
LMF2ENSG00000100258.13247.50250127.880300.952506.571705.25000K562MAGOH
LMF2ENSG00000100258.13820.53490641.848800.354202.775901.69790K562MAK16
LMF2ENSG00000100258.13253.30660127.601900.989106.128304.68130K562MATR3
LMF2ENSG00000100258.13353.79840231.379600.612603.865802.81880K562METAP2
LMF2ENSG00000100258.13361.65940158.348101.191404.191502.51900K562NONO
LMF2ENSG00000100258.13652.36680389.725000.743103.291602.18420K562PABPN1
LMF2ENSG00000100258.13511.17420344.487500.569304.215903.17420K562PPIG
LMF2ENSG00000100258.13413.72790242.314100.771702.282401.46850K562PSIP1
LMF2ENSG00000100258.13285.67800124.253101.2010011.103209.83430K562PTBP1
LMF2ENSG00000100258.13837.64060626.483700.419003.262302.68050K562PUS1
LMF2ENSG00000100258.13539.55260335.953100.683403.547201.35680K562RBFOX2
LMF2ENSG00000100258.13809.79190610.508100.407403.623502.95780K562RBM15
LMF2ENSG00000100258.13253.43160119.075601.089608.117306.57520K562RBM22
LMF2ENSG00000100258.13271.84000116.128201.226904.047802.26580K562RBM34
LMF2ENSG00000100258.13339.91370158.776201.098102.229501.50040K562RPS19
LMF2ENSG00000100258.1394.6004052.265200.855902.684301.84330K562SF3B4
LMF2ENSG00000100258.13700.50930434.751300.688102.737001.44820K562SFPQ
LMF2ENSG00000100258.13318.45220121.823501.386207.790206.60980K562SRSF1
LMF2ENSG00000100258.13365.03670172.584801.080606.366304.65460K562SRSF4
LMF2ENSG00000100258.13304.19310115.087801.402208.228506.31570K562SRSF5
LMF2ENSG00000100258.13387.16170123.263101.651104.843503.89480K562TARDBP
LMF2ENSG00000100258.13404.89280118.909101.7676024.3603021.76020K562TIA1
LMF2ENSG00000100258.13325.58840116.756801.479406.259204.45440K562TRA2A
LMF2ENSG00000100258.13414.24530247.884300.740702.225801.39070K562TRIM56
LMF2ENSG00000100258.1321.5832050.33750-1.221702.064001.37080K562U2AF2
LMF2ENSG00000100258.131125.88040701.561700.6823012.8454011.43590K562UPF1
LMF2ENSG00000100258.13512.81900624.24640-0.283702.055401.31840K562WDR43
LMF2ENSG00000100258.13350.87220162.820301.107602.803501.58890K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.





10 RBPs can affect the splicing of LMF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLMF2ENSG00000100258.13chr22-5094223650942359509422365094233350942768509428800.107000.001980.01277longerK562AQR
A3SSLMF2ENSG00000100258.13chr22-5094410250944331509441025094424450944463509446490.093000.000030.00024longerK562AQR
RILMF2ENSG00000100258.13chr22-509427685094315650942768509428805094298750943156-0.065000.002010.08912excludedK562PPIL4
RILMF2ENSG00000100258.13chr22-509427685094315650942768509428805094298750943156-0.120000.000410.07405excludedK562DHX30
RILMF2ENSG00000100258.13chr22-509427685094315650942768509428805094298750943156-0.112000.000030.00807excludedHepG2DDX55
RILMF2ENSG00000100258.13chr22-5094276850943156509427685094288050942987509431560.074000.000340.00663includedHepG2PCBP1
RILMF2ENSG00000100258.13chr22-5094276850943156509427685094288050942987509431560.061000.009450.07381includedHepG2TAF15
RILMF2ENSG00000100258.13chr22-5094356650943746509435665094358250943657509437460.122000.012080.09119includedHepG2U2AF1
RILMF2ENSG00000100258.13chr22-5094276850943156509427685094288050942987509431560.119000.000000.00003includedHepG2G3BP1
RILMF2ENSG00000100258.13chr22-5094276850943156509427685094288050942987509431560.051000.002970.05387includedHepG2KHSRP
RILMF2ENSG00000100258.13chr22-5094356650943746509435665094358250943657509437460.188000.000000.00004includedK562AQR
MXELMF2ENSG00000100258.13chr22-5094348550943582509436575094376350943230509434135094383150943966-0.168000.001290.071902includedHepG2NOL12

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LMF2 is not avaliable on ENCORE database.