LINC00969

General Information

Gene Name : LINC00969
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LINC00969)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LINC00969 is not avaliable on ENCORE database.

Proteins bound to RNA

LINC00969 RNA is bound by 39 proteins.

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eCLIP assay for LINC00969 is not avaliable on ENCORE database.

39 proteins are bound to LINC00969 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	195440163	195440231	+	intron-Distal	6.39551	80.75799	HepG2	PCBP2
chr3	195440166	195440231	+	intron-Distal	5.82108	56.08588	HepG2	HNRNPK
chr3	195440782	195440853	+	intron-Distal	6.18845	43.26932	HepG2	HNRNPK
chr3	195440792	195440866	+	intron-Distal	5.26029	37.64857	HepG2	PCBP2
chr3	195440170	195440228	+	intron-Distal	5.27307	22.21086	HepG2	DDX59
chr3	195425881	195425956	+	intron-Distal,intron-Proximal	4.51134	20.45123	HepG2	U2AF2
chr3	195391120	195391155	+	intron-Proximal	6.66263	16.44435	K562	AQR
chr3	195391155	195391163	+	intron-Proximal	6.51576	15.90046	K562	AQR
chr3	195410722	195410757	+	intron-Proximal	4.26950	15.35207	K562	RBM15
chr3	195390892	195390948	+	intron-Proximal	4.22243	14.51197	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 108 entries

eCLIP assay for LINC00969 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LINC00969 is not available on ENCORE database.
77 RBPs can affect the levels of LINC00969.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.

77 RBPs can affect the gene expression of LINC00969 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LINC00969	ENSG00000242086.4	1324.00460	768.75260	0.78420	18.57260	17.49510	HepG2	SSB
LINC00969	ENSG00000242086.4	920.65710	373.09920	1.30300	18.82290	17.37490	HepG2	EIF2S1
LINC00969	ENSG00000242086.4	758.26150	373.27090	1.02240	16.84480	15.62770	HepG2	TAF15
LINC00969	ENSG00000242086.4	1708.54580	2444.53760	-0.51680	11.19380	9.98040	K562	DDX47
LINC00969	ENSG00000242086.4	818.93940	416.15870	0.97650	10.92940	9.65190	HepG2	MAGOH
LINC00969	ENSG00000242086.4	755.37510	390.77380	0.95080	10.87720	9.57220	HepG2	HNRNPK
LINC00969	ENSG00000242086.4	880.49440	1412.23380	-0.68160	10.49670	9.26120	K562	PTBP1
LINC00969	ENSG00000242086.4	716.19200	425.31840	0.75170	9.58520	8.68750	HepG2	NELFE
LINC00969	ENSG00000242086.4	642.68270	1187.19570	-0.88540	10.25610	8.66150	K562	RPS19
LINC00969	ENSG00000242086.4	487.43660	245.62650	0.98860	9.78540	8.35830	HepG2	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.

19 RBPs can affect the splicing of LINC00969 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LINC00969	ENSG00000242086.4	chr3	+	195401690	195401737			195400688	195400858	195404597	195404938	0.22500	0.00000	0.00007	included	K562	PUS1
A3SS	LINC00969	ENSG00000242086.4	chr3	+	195395364	195395558			195395389	195395558	195392936	195393085	0.18000	0.00000	0.00000	longer	K562	AQR
SE	LINC00969	ENSG00000242086.4	chr3	+	195423231	195423460			195416209	195416309	195425900	195426078	0.20900	0.00001	0.00021	included	HepG2	U2AF2
SE	LINC00969	ENSG00000242086.4	chr3	+	195401690	195401877			195400688	195400858	195404597	195404938	-0.17100	0.00001	0.00105	excluded	K562	FXR1
SE	LINC00969	ENSG00000242086.4	chr3	+	195401690	195401838			195400688	195400858	195404597	195404938	0.16300	0.00001	0.00549	included	K562	HNRNPA1
SE	LINC00969	ENSG00000242086.4	chr3	+	195401690	195401737			195400688	195400858	195404597	195404938	0.21600	0.00001	0.00077	included	K562	UTP18
SE	LINC00969	ENSG00000242086.4	chr3	+	195401690	195401737			195400688	195400858	195404597	195404938	0.16700	0.00010	0.00487	included	K562	AKAP8L
SE	LINC00969	ENSG00000242086.4	chr3	+	195423231	195423460			195416209	195416309	195425900	195426078	0.21300	0.00010	0.01281	included	HepG2	TBRG4
SE	LINC00969	ENSG00000242086.4	chr3	+	195416209	195416309			195415403	195415668	195425900	195426041	-0.30700	0.00010	0.00190	excluded	HepG2	U2AF2
MXE	LINC00969	ENSG00000242086.4	chr3	+	195415403	195415668	195423231	195423460	195410622	195410736	195425900	195426078	0.25400	0.00018	0.00841	1included	K562	FXR2

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LINC00969

General Information

Functions

Localization

Domains (AlphaFold: LINC00969)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LINC00969 is not avaliable on ENCORE database.

39 proteins are bound to LINC00969 RNA:

eCLIP assay for LINC00969 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.

77 RBPs can affect the gene expression of LINC00969 :

The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.

19 RBPs can affect the splicing of LINC00969 :

The Knockdown/knockout RNA-Seq assay for LINC00969 is not avaliable on ENCORE database.