LINC00969

General Information

Gene Name       : LINC00969
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00969)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00969 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00969 RNA is bound by 39 proteins.  







eCLIP assay for LINC00969 is not avaliable on ENCORE database.





39 proteins are bound to LINC00969 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3195428007195428086+intron-Distal3.572884.25147HepG2LSM11
chr3195424377195424454+intron-Distal3.278583.23948HepG2HNRNPK
chr3195418005195418097+intron-Distal4.430094.80949K562HNRNPK
chr3195440162195440230+intron-Distal5.7276513.73149HepG2QKI
chr3195414898195414990+intron-Distal3.184253.02632HepG2ILF3
chr3195441242195441313+intron-Distal4.765335.15063HepG2CSTF2T
chr3195440786195440852+intron-Distal3.247836.55440HepG2CSTF2T
chr3195441251195441312+intron-Distal4.114474.24164HepG2DDX59
chr3195419174195419282+intron-Distal3.461424.48257K562FUS
chr3195437859195437917+intron-Distal4.961135.90029HepG2EXOSC5
chr3195425713195425786+intron-Distal3.4247113.75825HepG2U2AF2
chr3195441047195441078+intron-Distal3.720935.84244HepG2HNRNPK
chr3195421086195421150+intron-Distal3.202037.15650K562SAFB2
chr3195437185195437268+intron-Distal5.800169.19926HepG2EXOSC5
chr3195419222195419336+intron-Distal3.452705.53307K562ZNF622
chr3195425882195425920+intron-Distal,intron-Proximal4.360763.26999K562U2AF2
chr3195418906195418956+intron-Distal3.634485.49916K562SAFB2
chr3195425127195425179+intron-Distal3.301673.45841K562HNRNPK
chr3195411237195411382+intron-Distal3.085733.04614K562FUS
chr3195440165195440233+intron-Distal3.264809.96361HepG2CSTF2T
chr3195440782195440853+intron-Distal6.1884543.26932HepG2HNRNPK
chr3195424715195424821+intron-Distal4.2157112.58675K562HNRNPK
chr3195419240195419491+intron-Distal4.5109110.93644HepG2SRSF9
chr3195438337195438390+intron-Distal,intron-Proximal4.644245.60124HepG2BCCIP
chr3195416461195416530+intron-Distal3.132277.67446K562SLTM
chr3195421432195421482+intron-Distal3.087714.02149K562SLTM
chr3195419296195419363+intron-Distal5.040598.27957HepG2HLTF
chr3195426324195426353+intron-Distal4.6537312.98000K562DGCR8
chr3195418970195419063+intron-Distal3.386238.85639K562SLTM
chr3195440790195440862+intron-Distal4.603144.09242HepG2QKI
chr3195440656195440706+intron-Distal4.6498813.00843HepG2HNRNPK
chr3195439925195439976+intron-Distal4.344154.68055HepG2CSTF2T
chr3195424733195424794+intron-Distal3.419218.80838HepG2PCBP2
chr3195414469195414568+intron-Distal4.505874.76505K562HNRNPK
chr3195418948195419036+intron-Distal3.768913.27871HepG2SAFB
chr3195416216195416285+intron-Distal3.4279110.08874HepG2BCLAF1
chr3195413039195413088+intron-Distal,intron-Proximal3.041263.04623HepG2KHSRP
chr3195418979195419097+intron-Distal3.064475.96311K562TAF15
chr3195440958195440979+intron-Distal3.760603.16310HepG2CSTF2T
chr3195440177195440224+intron-Distal5.485105.87144HepG2PCBP1
chr3195419199195419296+intron-Distal3.6896210.31692HepG2HLTF
chr3195428211195428298+intron-Distal,intron-Proximal3.677773.50219HepG2CSTF2
chr3195419063195419129+intron-Distal4.347647.25508K562SLTM
chr3195420064195420139+intron-Distal4.008654.14779K562SAFB
chr3195419362195419482+intron-Distal3.945173.89395K562GRWD1
chr3195437276195437328+intron-Distal3.344863.66782HepG2HNRNPM
chr3195418992195419116+intron-Distal3.185977.00775HepG2RBM22
chr3195425881195425956+intron-Distal,intron-Proximal4.5113420.45123HepG2U2AF2
chr3195416216195416303+intron-Distal3.113133.46619K562GRWD1
chr3195437328195437402+intron-Distal4.656614.64592HepG2HNRNPM
chr3195440792195440866+intron-Distal5.2602937.64857HepG2PCBP2
chr3195423604195423670+intron-Distal3.332333.06644K562GTF2F1
chr3195419807195419885+intron-Distal3.130613.56364K562SAFB
chr3195410965195411024+intron-Distal3.586817.21479K562UCHL5
chr3195437600195437645+intron-Distal4.997965.43487HepG2EXOSC5
chr3195424853195424915+intron-Distal3.495158.96960K562PTBP1
chr3195421004195421092+intron-Distal3.060053.54017HepG2HLTF
chr3195421290195421354+intron-Distal3.574835.49916K562SAFB2
chr3195419445195419490+intron-Distal3.897835.55255HepG2HLTF
chr3195410961195411023+intron-Distal3.226115.24703K562BUD13
chr3195439926195439968+intron-Distal3.536265.04426HepG2DDX59
chr3195424821195424922+intron-Distal3.999346.17376K562HNRNPK
chr3195440166195440231+intron-Distal5.8210856.08588HepG2HNRNPK
chr3195416285195416328+intron-Distal,intron-Proximal4.872825.68196HepG2BCLAF1
chr3195440163195440231+intron-Distal6.3955180.75799HepG2PCBP2
chr3195419260195419327+intron-Distal4.127403.33602K562SAFB
chr3195425186195425335+intron-Distal4.002267.85219HepG2HNRNPL
chr3195425789195425844+intron-Distal,intron-Proximal3.773175.81956HepG2RBM5
chr3195419436195419537+intron-Distal3.204295.41523K562SRSF1
chr3195419171195419283+intron-Distal4.083517.15692K562TAF15
chr3195440657195440707+intron-Distal3.477544.69054HepG2CSTF2T
chr3195428237195428296+intron-Distal,intron-Proximal3.073938.26020HepG2U2AF2
chr3195414478195414558+intron-Distal3.464003.93724HepG2HNRNPK
chr3195425549195425604+intron-Distal4.484867.29386HepG2U2AF2
chr3195441274195441373+intron-Distal4.289095.01722K562CSTF2T
chr3195441038195441070+intron-Distal3.983205.91072HepG2PCBP2
chr3195425844195425870+intron-Distal,intron-Proximal4.014103.27601HepG2RBM5
chr3195440170195440228+intron-Distal5.2730722.21086HepG2DDX59
chr3195419395195419451+intron-Distal4.117586.86279K562SLTM
chr3195424735195424791+intron-Distal3.213095.29274K562PTBP1
chr3195420955195421119+intron-Distal3.621484.99558HepG2GTF2F1
chr3195419433195419493+intron-Distal3.367436.56297K562SAFB2
chr3195416591195416646+intron-Distal3.082984.31726K562SLTM
chr3195440799195440854+intron-Distal5.2594311.56694HepG2DDX59
chr3195420912195420987+intron-Distal4.310133.48173K562GTF2F1
chr3195423676195423755+intron-Distal3.098095.48989K562XRN2
chr3195439942195440003+intron-Distal5.4009911.09144HepG2HNRNPK
chr3195419803195419880+intron-Distal3.309516.98180K562SLTM
chr3195395510195395556+intron-Proximal3.874884.98250K562AQR
chr3195410630195410743+intron-Proximal3.5350414.20174K562ZNF622
chr3195393032195393086+intron-Proximal4.6702910.13662HepG2BCLAF1
chr3195410661195410745+intron-Proximal3.537208.81232HepG2SRSF1
chr3195391078195391133+intron-Proximal4.663253.25266K562DDX24
chr3195392986195393086+intron-Proximal4.589476.36164K562DDX24
chr3195395368195395429+intron-Proximal3.126047.56548K562BUD13
chr3195391120195391155+intron-Proximal6.6626316.44435K562AQR
chr3195410533195410643+intron-Proximal3.856813.66668K562KHSRP
chr3195410634195410751+intron-Proximal3.171036.77715K562SRSF1
chr3195434994195435064+intron-Proximal3.708233.01911HepG2U2AF1
chr3195410722195410757+intron-Proximal4.2695015.35207K562RBM15
chr3195410592195410640+intron-Proximal3.210814.38107K562AQR
chr3195434986195435062+intron-Proximal3.737643.28108K562U2AF2
chr3195434983195435059+intron-Proximal5.0135813.75718HepG2U2AF2
chr3195395388195395413+intron-Proximal4.276507.82199HepG2BCLAF1
chr3195390892195390948+intron-Proximal4.2224314.51197K562SF3B4
chr3195410621195410734+intron-Proximal3.5114112.81333K562DDX24
chr3195391107195391152+intron-Proximal4.496164.23351K562BUD13
chr3195391155195391163+intron-Proximal6.5157615.90046K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00969 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00969 is not available on ENCORE database.

  • 77 RBPs can affect the levels of LINC00969.  








The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.





77 RBPs can affect the gene expression of LINC00969 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00969ENSG00000242086.4479.20610631.44220-0.398003.709703.02550HepG2ACO1
LINC00969ENSG00000242086.4304.98220471.65040-0.629003.478102.89050HepG2AKAP1
LINC00969ENSG00000242086.41047.43290724.277100.532103.444902.34600HepG2CCAR1
LINC00969ENSG00000242086.4445.92830631.32090-0.501605.634304.74670HepG2CKAP4
LINC00969ENSG00000242086.4468.03610649.50400-0.472702.102301.44060HepG2CNOT7
LINC00969ENSG00000242086.4474.44940584.00090-0.299702.403601.62090HepG2DDX19B
LINC00969ENSG00000242086.4662.48080472.690400.486903.665202.89310HepG2DDX21
LINC00969ENSG00000242086.4308.04850451.80480-0.552503.083302.42760HepG2DDX3X
LINC00969ENSG00000242086.4520.24550388.111100.422601.987501.45660HepG2DDX6
LINC00969ENSG00000242086.4920.65710373.099201.3030018.8229017.37490HepG2EIF2S1
LINC00969ENSG00000242086.4756.72590412.317800.875908.297607.19470HepG2EIF4A3
LINC00969ENSG00000242086.4411.80810617.04600-0.583403.743802.77290HepG2EWSR1
LINC00969ENSG00000242086.4464.04880311.900900.573104.155803.20020HepG2FUBP3
LINC00969ENSG00000242086.4560.93520416.013500.431102.388601.74380HepG2FXR1
LINC00969ENSG00000242086.4561.13800385.912400.540003.372702.64180HepG2G3BP1
LINC00969ENSG00000242086.4648.28480409.696900.662005.277404.03340HepG2G3BP2
LINC00969ENSG00000242086.4561.30090429.986300.384403.237002.46670HepG2HNRNPF
LINC00969ENSG00000242086.4755.37510390.773800.9508010.877209.57220HepG2HNRNPK
LINC00969ENSG00000242086.4300.72870449.03700-0.578404.474903.72020HepG2HNRNPU
LINC00969ENSG00000242086.4684.69340394.558400.795105.869804.35960HepG2KHSRP
LINC00969ENSG00000242086.4818.93940416.158700.9765010.929409.65190HepG2MAGOH
LINC00969ENSG00000242086.4653.91750811.94510-0.312302.268701.57850HepG2NOL12
LINC00969ENSG00000242086.4815.94810457.076200.835909.048207.75240HepG2NSUN2
LINC00969ENSG00000242086.4478.23180375.586700.348502.238801.68230HepG2PCBP1
LINC00969ENSG00000242086.4205.20740299.05590-0.543303.109001.80260HepG2PKM
LINC00969ENSG00000242086.4625.81950822.81070-0.394804.402303.69240HepG2PUM1
LINC00969ENSG00000242086.4524.88630643.16710-0.293202.304001.72890HepG2PUS1
LINC00969ENSG00000242086.4629.23100413.918500.604105.597104.75460HepG2QKI
LINC00969ENSG00000242086.4592.42580783.91370-0.404103.580703.01230HepG2RBM22
LINC00969ENSG00000242086.4603.37990375.646000.683606.356305.37250HepG2RBM25
LINC00969ENSG00000242086.4716.19200425.318400.751709.585208.68750HepG2NELFE
LINC00969ENSG00000242086.4653.91850396.104500.723108.820507.81350HepG2RECQL
LINC00969ENSG00000242086.4693.18430907.81070-0.389202.284001.67050HepG2SF3A3
LINC00969ENSG00000242086.4603.16840397.902800.600005.914205.10530HepG2SF3B4
LINC00969ENSG00000242086.4580.57350415.313800.483204.083603.53660HepG2SRSF1
LINC00969ENSG00000242086.4556.86880765.31090-0.458704.666803.88980HepG2SRSF5
LINC00969ENSG00000242086.4617.19610422.438700.546905.957004.99800HepG2SRSF7
LINC00969ENSG00000242086.4496.28350337.870800.554605.261204.54320HepG2SRSF9
LINC00969ENSG00000242086.41324.00460768.752600.7842018.5726017.49510HepG2SSB
LINC00969ENSG00000242086.4758.26150373.270901.0224016.8448015.62770HepG2TAF15
LINC00969ENSG00000242086.4550.08090343.016300.681306.614205.32700HepG2TIA1
LINC00969ENSG00000242086.4487.43660245.626500.988609.785408.35830HepG2UCHL5
LINC00969ENSG00000242086.4621.01510805.08930-0.374503.911303.10240HepG2UPF1
LINC00969ENSG00000242086.4608.73430380.778300.676804.215202.96080HepG2UPF2
LINC00969ENSG00000242086.4668.34400409.287100.707405.860504.81680HepG2XRN2
LINC00969ENSG00000242086.4671.97340885.44410-0.398005.004504.32300HepG2ZNF622
LINC00969ENSG00000242086.42212.336802716.07310-0.296002.816101.56640K562APOBEC3C
LINC00969ENSG00000242086.43035.692702338.091400.376603.822703.15520K562AQR
LINC00969ENSG00000242086.42387.190803215.31300-0.429605.960704.19490K562CCDC124
LINC00969ENSG00000242086.42173.516403156.73600-0.538406.272804.05080K562DDX19B
LINC00969ENSG00000242086.41708.545802444.53760-0.5168011.193809.98040K562DDX47
LINC00969ENSG00000242086.41253.526301556.44490-0.312303.586502.78470K562EIF2S2
LINC00969ENSG00000242086.42156.869901393.095300.630508.902207.42940K562EIF4A3
LINC00969ENSG00000242086.41141.920301453.25530-0.347802.766601.91810K562FIP1L1
LINC00969ENSG00000242086.41205.233701448.75750-0.265502.597602.00750K562FXR1
LINC00969ENSG00000242086.4741.164801105.10560-0.576304.045003.14960K562G3BP2
LINC00969ENSG00000242086.41602.371201285.137100.318202.703602.11230K562HNRNPC
LINC00969ENSG00000242086.41463.281601970.24490-0.429204.098303.13590K562HSPD1
LINC00969ENSG00000242086.41101.188701406.85340-0.353402.945201.70700K562IGF2BP3
LINC00969ENSG00000242086.42370.090702844.07930-0.263002.328401.37050K562MAK16
LINC00969ENSG00000242086.42674.942203328.36680-0.315303.074602.10700K562MBNL1
LINC00969ENSG00000242086.42722.441003280.98180-0.269202.527401.45080K562MSI2
LINC00969ENSG00000242086.42646.374803367.42140-0.347603.807302.03410K562NOL12
LINC00969ENSG00000242086.4745.277001180.67760-0.663805.684903.68800K562NONO
LINC00969ENSG00000242086.4814.647601256.69670-0.625405.875803.25850K562PA2G4
LINC00969ENSG00000242086.4815.590801135.00770-0.476803.704901.56160K562PES1
LINC00969ENSG00000242086.41090.281701428.60960-0.389904.206303.21660K562POLR2G
LINC00969ENSG00000242086.4744.897901165.62750-0.646006.847205.66660K562PRPF8
LINC00969ENSG00000242086.4880.494401412.23380-0.6816010.496709.26120K562PTBP1
LINC00969ENSG00000242086.42538.464903358.50340-0.403904.719703.65760K562PUF60
LINC00969ENSG00000242086.42187.182602705.24110-0.306703.600402.93770K562RBM15
LINC00969ENSG00000242086.42451.010301967.082700.317203.001001.32540K562RBM17
LINC00969ENSG00000242086.4642.682701187.19570-0.8854010.256108.66150K562RPS19
LINC00969ENSG00000242086.41070.966501470.72500-0.457603.790302.59560K562RPS3
LINC00969ENSG00000242086.4761.909801191.66750-0.645304.904303.13020K562RRP9
LINC00969ENSG00000242086.4919.197301272.83480-0.469604.722703.30100K562SAFB
LINC00969ENSG00000242086.4975.644001316.00400-0.431703.719902.02960K562SDAD1
LINC00969ENSG00000242086.41398.825301148.728200.284102.450901.64790K562SF3B4
LINC00969ENSG00000242086.4844.687101164.12670-0.462804.101502.06240K562SRP68
LINC00969ENSG00000242086.42277.698701986.470500.197302.422801.53990K562SRPK2
LINC00969ENSG00000242086.41290.941301626.13710-0.333003.285701.62590K562SRSF9
LINC00969ENSG00000242086.41048.625301432.89260-0.450405.330204.18140K562SYNCRIP
LINC00969ENSG00000242086.41356.433801106.015800.294302.529001.76080K562U2AF2
LINC00969ENSG00000242086.42161.677601782.885300.277802.385501.57100K562WDR3
LINC00969ENSG00000242086.4892.286101216.34670-0.447003.709802.23690K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00969 is not available on ENCORE database.





19 RBPs can affect the splicing of LINC00969 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC00969ENSG00000242086.4chr3+1954232311954234601954154031954156681954259001954260780.403000.001820.03388includedK562SRSF1
SELINC00969ENSG00000242086.4chr3+1954232311954234601954162091954163091954259001954260780.164000.000500.01153includedHepG2U2AF1
SELINC00969ENSG00000242086.4chr3+1954016901954017371954006881954008581954045971954049380.167000.000100.00487includedK562AKAP8L
SELINC00969ENSG00000242086.4chr3+1954232311954234601954162091954163091954259001954260780.213000.000100.01281includedHepG2TBRG4
SELINC00969ENSG00000242086.4chr3+1954232311954234601954162091954163091954259001954260780.209000.000010.00021includedHepG2U2AF2
SELINC00969ENSG00000242086.4chr3+195416209195416309195415403195415668195425900195426041-0.307000.000100.00190excludedHepG2U2AF2
SELINC00969ENSG00000242086.4chr3+195390494195390638195389441195389604195390956195391121-0.517000.007570.07322excludedHepG2U2AF2
SELINC00969ENSG00000242086.4chr3+195401690195401877195400688195400858195404597195404938-0.171000.000010.00105excludedK562FXR1
SELINC00969ENSG00000242086.4chr3+1954016901954018381954006881954008581954045971954049380.163000.000010.00549includedK562HNRNPA1
SELINC00969ENSG00000242086.4chr3+1954016901954017371954006881954008581954045971954049380.225000.000000.00007includedK562PUS1
SELINC00969ENSG00000242086.4chr3+1954232311954234601954162091954163091954259001954260780.224000.002150.04640includedHepG2SRSF1
SELINC00969ENSG00000242086.4chr3+1954016901954017371954006881954008581954045971954049380.216000.000010.00077includedK562UTP18
SELINC00969ENSG00000242086.4chr3+1954016901954017371954006881954008581954045971954049380.120000.005540.09869includedK562RBM15
SELINC00969ENSG00000242086.4chr3+1954016901954017371954006881954008581954045971954049380.167000.000470.01514includedK562AGGF1
A3SSLINC00969ENSG00000242086.4chr3+1953953641953955581953953891953955581953929361953930850.180000.000000.00000longerK562AQR
A5SSLINC00969ENSG00000242086.4chr3+195423231195423460195423231195423389195425900195426049-0.098000.002130.07229shorterK562PUS1
RILINC00969ENSG00000242086.4chr3+1954350241954353841954350241954351391954352991954353840.404000.009400.07353includedHepG2TAF15
RILINC00969ENSG00000242086.4chr3+1954350241954353841954350241954351391954352991954353840.449000.007380.04840includedHepG2SF3B4
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.271000.001720.047932includedK562UCHL5
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.225000.000610.015722includedHepG2SRSF1
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.240000.001320.085682includedHepG2UCHL5
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.260000.008670.083582includedK562U2AF2
MXELINC00969ENSG00000242086.4chr3+195416209195416309195425900195426049195415403195415668195435004195435101-0.193000.001640.012342includedHepG2U2AF2
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.235000.001660.093192includedHepG2QKI
MXELINC00969ENSG00000242086.4chr3+195416209195416309195425900195426049195415403195415668195435004195435101-0.142000.000770.026572includedK562PPIL4
MXELINC00969ENSG00000242086.4chr3+1954154031954156681954232311954234601954106221954107361954259001954260780.254000.000180.008411includedK562FXR2
MXELINC00969ENSG00000242086.4chr3+195415403195415668195423231195423460195410622195410736195425900195426078-0.189000.000610.089242includedK562GPKOW

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00969 is not avaliable on ENCORE database.