KCNAB2

General Information

Gene Name       : KCNAB2
Gene ID             : ENSG00000069424.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNAB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNAB2ENSG00000069424.1414.9539.0527.00ENCSR000AEF
HepG2KCNAB2ENSG00000069424.147.524.616.06ENCSR985KAT
K562KCNAB2ENSG00000069424.145.945.435.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNAB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCNAB2 RNA is bound by 16 proteins.  







eCLIP assay for KCNAB2 is not avaliable on ENCORE database.





16 proteins are bound to KCNAB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161611086161186+3'-UTR4.628429.82364K562UPF1
chr161610386161107+3'-UTR5.279316.34419K562PUM2
chr161610006161051+3'-UTR4.257173.87930K562UPF1
chr161610946161108+3'-UTR4.963626.42091K562UPF1
chr161598046159871+3'-UTR,intron-Proximal4.878665.63383K562UPF1
chr160873336087412+5'-UTR,intron-Distal4.525695.80675K562EIF4G2
chr160527886052848+5'-UTR,intron-Distal3.161093.12941K562UCHL5
chr161545206154588+CDS,intron-Distal,intron-Proximal3.595305.13777HepG2PRPF8
chr161567166156823+CDS,intron-Distal,intron-Proximal4.223453.79199HepG2PPIG
chr161554156155507+CDS,intron-Distal,intron-Proximal4.474704.38106HepG2PPIG
chr161475256147589+CDS,intron-Distal,intron-Proximal4.238326.64430HepG2PPIG
chr160909746091061+intron-Distal5.368066.10540K562EIF4G2
chr160955786095729+intron-Distal5.071625.77100K562SLTM
chr160599866060108+intron-Distal3.477344.51074HepG2RBFOX2
chr160903396090415+intron-Distal4.108623.36882K562SLTM
chr160530066053075+intron-Distal5.018186.23953HepG2PCBP2
chr160903346090426+intron-Distal5.256865.14653K562EIF4G2
chr160593026059384+intron-Distal3.330543.36199K562EWSR1
chr160654826065602+intron-Distal4.242667.88692K562GTF2F1
chr161557536155866+intron-Distal,intron-Proximal3.676914.23459K562PRPF8
chr161133546113394+intron-Distal3.397663.12654K562SLTM
chr160610916061173+intron-Distal4.450184.36078K562GTF2F1
chr160545996054636+intron-Distal3.465293.61506K562NONO
chr160546366054682+intron-Distal4.262824.58989K562NONO
chr161171626117207+intron-Distal4.066173.10243K562SLTM
chr161187896118875+intron-Distal3.997426.47842K562SLTM
chr160538706053918+intron-Distal3.400134.34865K562NONO
chr160531206053235+intron-Distal4.570183.23168HepG2DDX59
chr161189026118993+intron-Distal4.497423.42967K562SLTM
chr160533696053461+intron-Distal4.339946.96393HepG2PCBP2
chr160545986054674+intron-Distal4.139614.22598K562CSTF2T
chr161557426155835+intron-Distal,intron-Proximal5.817339.77790HepG2EFTUD2
chr160596626059741+intron-Distal3.441753.84725K562NONO
chr160613846061489+intron-Distal4.245624.94713K562HNRNPL
chr160531196053304+intron-Distal5.4083220.20057HepG2PCBP2
chr160715906071667+intron-Distal4.322904.07596K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCNAB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNAB2 is not available on ENCORE database.

  • 101 RBPs can affect the levels of KCNAB2.  








The Knockdown/knockout RNA-Seq assay for KCNAB2 is not available on ENCORE database.





101 RBPs can affect the gene expression of KCNAB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNAB2ENSG00000069424.10204.07740322.32460-0.659405.172304.39250HepG2ACO1
KCNAB2ENSG00000069424.10398.01840283.326200.490302.577901.39070HepG2BUD13
KCNAB2ENSG00000069424.10167.13650245.68080-0.555802.522201.78370HepG2CALR
KCNAB2ENSG00000069424.10573.69190376.854300.606203.510902.39980HepG2CCAR1
KCNAB2ENSG00000069424.10192.62180357.16820-0.890802.566201.81900HepG2CIRBP
KCNAB2ENSG00000069424.10687.59460322.182501.0936021.8962020.42390HepG2CKAP4
KCNAB2ENSG00000069424.10462.45740298.071000.633607.018905.78920HepG2DDX19B
KCNAB2ENSG00000069424.10136.57730225.78930-0.725302.404401.49250HepG2DDX59
KCNAB2ENSG00000069424.10529.56320374.055100.501501.844001.32930HepG2DDX6
KCNAB2ENSG00000069424.10354.92360210.837700.751307.408906.41250HepG2DNAJC2
KCNAB2ENSG00000069424.10174.92570277.70980-0.666802.977502.04480HepG2EIF3D
KCNAB2ENSG00000069424.10478.03180359.547800.410802.602801.81130HepG2EIF4G2
KCNAB2ENSG00000069424.10422.71130641.84070-0.602506.835805.96090HepG2ETF1
KCNAB2ENSG00000069424.10108.90770199.16760-0.870902.289101.37260HepG2FTO
KCNAB2ENSG00000069424.10224.91250313.08930-0.477202.452101.71190HepG2FUBP3
KCNAB2ENSG00000069424.10337.33820225.403000.581602.831802.18410HepG2GPKOW
KCNAB2ENSG00000069424.10322.04420183.134700.814304.235202.86330HepG2GRSF1
KCNAB2ENSG00000069424.10407.09690307.684000.403802.788801.80830HepG2HDGF
KCNAB2ENSG00000069424.10296.15460163.446400.857404.983403.08310HepG2HNRNPAB
KCNAB2ENSG00000069424.10436.00020346.440300.331602.567601.91690HepG2HNRNPL
KCNAB2ENSG00000069424.10132.26280215.10540-0.701602.927802.28320HepG2HNRNPLL
KCNAB2ENSG00000069424.10316.42400237.279500.415202.373701.80920HepG2HNRNPU
KCNAB2ENSG00000069424.10169.69440354.79600-1.064102.536501.59850HepG2IGF2BP3
KCNAB2ENSG00000069424.10465.09110294.600300.658707.156705.57160HepG2KIF1C
KCNAB2ENSG00000069424.101250.71330403.246001.6329018.4812016.96740HepG2MATR3
KCNAB2ENSG00000069424.10214.45570309.01330-0.527002.860802.03900HepG2MSI2
KCNAB2ENSG00000069424.10508.21920377.170400.430103.552002.68870HepG2NOL12
KCNAB2ENSG00000069424.10406.91290223.496700.864402.351201.35100HepG2NONO
KCNAB2ENSG00000069424.10120.74920190.72530-0.659502.390501.69380HepG2NSUN2
KCNAB2ENSG00000069424.10515.40580367.330700.488501.915401.30560HepG2PABPC4
KCNAB2ENSG00000069424.10320.43030211.633300.598304.125503.24220HepG2PPIL4
KCNAB2ENSG00000069424.10506.46650360.077000.492103.759803.07690HepG2PUF60
KCNAB2ENSG00000069424.10466.74110382.278400.287902.021301.49830HepG2PUM1
KCNAB2ENSG00000069424.10333.96360464.28130-0.475303.061102.40970HepG2QKI
KCNAB2ENSG00000069424.10356.12340211.304200.753006.815305.87100HepG2SAFB2
KCNAB2ENSG00000069424.10162.64880309.44730-0.927905.551504.57730HepG2SF3A3
KCNAB2ENSG00000069424.10341.83440446.32910-0.384802.250401.71050HepG2SF3B4
KCNAB2ENSG00000069424.10414.26490283.713600.546002.766801.80920HepG2SMNDC1
KCNAB2ENSG00000069424.10398.01380605.90620-0.606307.103906.40350HepG2SRFBP1
KCNAB2ENSG00000069424.10232.10620465.89380-1.0052011.4805010.65910HepG2SRSF1
KCNAB2ENSG00000069424.10290.58430379.04920-0.383402.251701.74290HepG2SRSF9
KCNAB2ENSG00000069424.10488.83480316.345900.627703.949202.43620HepG2SSRP1
KCNAB2ENSG00000069424.10185.48990257.81430-0.475002.379701.50310HepG2SUPT6H
KCNAB2ENSG00000069424.10124.53910242.16270-0.959405.225004.34190HepG2SUPV3L1
KCNAB2ENSG00000069424.10524.11010418.827200.323402.051001.55540HepG2TAF15
KCNAB2ENSG00000069424.10302.62440209.636400.529502.566501.86420HepG2TARDBP
KCNAB2ENSG00000069424.10362.48810230.538000.652804.657804.04350HepG2TIAL1
KCNAB2ENSG00000069424.10576.22100232.624001.3085024.4758023.00260HepG2TRIM56
KCNAB2ENSG00000069424.10357.65900220.644700.696803.935702.07290HepG2TROVE2
KCNAB2ENSG00000069424.10167.28540326.68070-0.965606.734805.76650HepG2U2AF1
KCNAB2ENSG00000069424.1054.36520173.63840-1.675304.596403.30450HepG2U2AF2
KCNAB2ENSG00000069424.10646.95770372.467900.796503.376602.45220HepG2UBE2L3
KCNAB2ENSG00000069424.10280.67730143.033300.972506.180305.03660HepG2UCHL5
KCNAB2ENSG00000069424.10194.35770264.95420-0.447002.130501.59070HepG2UTP3
KCNAB2ENSG00000069424.10196.23240322.85930-0.718304.598603.76810HepG2ZC3H8
KCNAB2ENSG00000069424.10386.31340301.823500.356002.281401.77020HepG2ZNF622
KCNAB2ENSG00000069424.10470.58830254.562300.886307.570505.57320K562ABCF1
KCNAB2ENSG00000069424.10312.15800220.564400.501003.038302.03540K562BCLAF1
KCNAB2ENSG00000069424.10250.99400127.464400.977504.428403.31610K562BOP1
KCNAB2ENSG00000069424.10243.08130369.55800-0.604403.904602.47250K562CCDC124
KCNAB2ENSG00000069424.10412.43140275.774700.580604.010902.17780K562CEBPZ
KCNAB2ENSG00000069424.10465.56900305.390100.608203.722502.00190K562CKAP4
KCNAB2ENSG00000069424.10422.45950261.686900.690903.184202.03260K562CNOT7
KCNAB2ENSG00000069424.10240.52940135.534300.827504.786303.75900K562CPSF6
KCNAB2ENSG00000069424.10261.53490167.330900.644203.630002.39460K562CSTF2
KCNAB2ENSG00000069424.10464.35760316.979600.550704.159802.65670K562DDX21
KCNAB2ENSG00000069424.10284.86080193.798700.555603.044601.95070K562DDX3X
KCNAB2ENSG00000069424.10187.14930346.23960-0.887605.628204.32410K562DKC1
KCNAB2ENSG00000069424.10528.73340266.714900.9871012.8798011.50220K562EIF2S2
KCNAB2ENSG00000069424.1074.40630168.18900-1.176604.327703.04410K562EIF3A
KCNAB2ENSG00000069424.10127.72390196.21730-0.619402.465101.49520K562EIF3D
KCNAB2ENSG00000069424.1064.43820110.47900-0.777802.515801.75700K562EIF3G
KCNAB2ENSG00000069424.10459.34350297.191000.628103.867502.33030K562EXOSC5
KCNAB2ENSG00000069424.10389.47130182.998401.0896010.311008.55140K562FIP1L1
KCNAB2ENSG00000069424.10284.86790137.897101.046607.137405.73100K562FMR1
KCNAB2ENSG00000069424.10290.53450116.877701.3136010.311608.44060K562FTO
KCNAB2ENSG00000069424.10149.59530210.55470-0.493102.158601.61190K562FXR1
KCNAB2ENSG00000069424.1034.9042097.99000-1.489205.373304.31350K562G3BP2
KCNAB2ENSG00000069424.10275.95270129.404301.092407.248605.96290K562GPKOW
KCNAB2ENSG00000069424.10653.86030355.382300.879509.080607.69120K562GRSF1
KCNAB2ENSG00000069424.10447.17500244.887900.868604.884102.80170K562HNRNPAB
KCNAB2ENSG00000069424.10416.36770197.964701.072509.990708.91390K562HNRNPC
KCNAB2ENSG00000069424.10206.47060340.84540-0.723205.694704.40100K562HNRNPU
KCNAB2ENSG00000069424.10599.49730317.130300.918607.918905.04180K562IGF2BP1
KCNAB2ENSG00000069424.10228.20240110.488801.046305.053603.74510K562KRR1
KCNAB2ENSG00000069424.10329.92270177.226800.896407.437805.83250K562MATR3
KCNAB2ENSG00000069424.10254.21290382.55930-0.589603.003502.04640K562MBNL1
KCNAB2ENSG00000069424.10276.66470126.312101.131008.470606.87800K562METAP2
KCNAB2ENSG00000069424.10859.54350511.302300.749304.173102.78740K562MSI2
KCNAB2ENSG00000069424.10424.09110297.060700.513503.986803.03080K562MTPAP
KCNAB2ENSG00000069424.10568.83370330.028100.7853010.855909.51010K562NSUN2
KCNAB2ENSG00000069424.10471.25350251.404300.906405.138003.42890K562PABPC1
KCNAB2ENSG00000069424.10614.74140378.024800.701405.424404.25320K562PCBP3
KCNAB2ENSG00000069424.10458.60270289.947400.661405.379204.26350K562POLR2G
KCNAB2ENSG00000069424.10348.30920207.747500.745404.569703.47890K562PPIG
KCNAB2ENSG00000069424.1096.34850178.39830-0.888803.903603.01430K562PRPF8
KCNAB2ENSG00000069424.10273.57550523.37590-0.935908.583407.13520K562PUF60
KCNAB2ENSG00000069424.10798.76190545.451100.550206.299504.82990K562PUM2
KCNAB2ENSG00000069424.10486.84250337.094500.530203.474901.66700K562RBM17
KCNAB2ENSG00000069424.10385.34790174.068801.1464011.086708.86230K562NELFE
KCNAB2ENSG00000069424.10405.30340238.362300.765703.775201.92390K562SBDS
KCNAB2ENSG00000069424.10313.44660178.208400.814605.013102.75550K562SRP68
KCNAB2ENSG00000069424.10250.67500169.192500.567102.709302.00890K562SRSF1
KCNAB2ENSG00000069424.10274.59080191.061600.523102.317801.36870K562SRSF4
KCNAB2ENSG00000069424.10522.40170282.893100.8848010.780908.45350K562SRSF7
KCNAB2ENSG00000069424.10350.56820219.594600.674803.869502.34810K562STAU1
KCNAB2ENSG00000069424.10684.22300456.655600.583306.016103.91360K562SUCLG1
KCNAB2ENSG00000069424.10177.07030290.83930-0.715904.740703.66060K562SYNCRIP
KCNAB2ENSG00000069424.10468.24690171.198201.451505.066704.09340K562TARDBP
KCNAB2ENSG00000069424.10356.24260181.508500.972707.635105.88220K562TRIM56
KCNAB2ENSG00000069424.10319.56200214.039900.578103.141701.64360K562TRIP6
KCNAB2ENSG00000069424.10627.11690403.483700.636107.390905.27830K562TROVE2
KCNAB2ENSG00000069424.1036.8630094.99490-1.365704.663203.16780K562U2AF1
KCNAB2ENSG00000069424.1024.5132098.10550-2.000808.225506.82620K562U2AF2
KCNAB2ENSG00000069424.10423.53630182.761901.2124011.220509.11690K562UCHL5
KCNAB2ENSG00000069424.10483.83250349.938400.467302.414201.74110K562UPF1
KCNAB2ENSG00000069424.10178.90240326.70460-0.868807.186804.57200K562UPF2
KCNAB2ENSG00000069424.10224.63160311.39860-0.471202.847301.98870K562WDR43
KCNAB2ENSG00000069424.10330.25270186.172700.826804.921003.13610K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNAB2 is not available on ENCORE database.





7 RBPs can affect the splicing of KCNAB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCNAB2ENSG00000069424.10chr1+607869460788956052770605284861005766100705-0.283000.000070.00235excludedK562SRSF1
SEKCNAB2ENSG00000069424.10chr1+6101890610193261005766100705613281461328580.822000.008260.07848includedHepG2U2AF2
SEKCNAB2ENSG00000069424.10chr1+6101890610193261005766100705613281461328580.403000.003040.09555includedHepG2MATR3
SEKCNAB2ENSG00000069424.10chr1+6101890610193261005766100705613281461328580.608000.000020.00080includedHepG2SRSF1
SEKCNAB2ENSG00000069424.10chr1+610189061019326100576610070561328146132858-0.307000.000400.01688excludedK562UTP18
SEKCNAB2ENSG00000069424.10chr1+607869460788956052770605284861005766100705-0.238000.000480.02162excludedK562TARDBP
SEKCNAB2ENSG00000069424.10chr1+607869460788956052770605284861005766100705-0.273000.000070.00554excludedK562HNRNPK
SEKCNAB2ENSG00000069424.10chr1+6101890610193261005766100705613281461328580.551000.000280.06169includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCNAB2 is not avaliable on ENCORE database.