HDAC6

General Information

Gene Name       : HDAC6
Gene ID             : ENSG00000094631.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HDAC6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HDAC6ENSG00000094631.1924.3426.5525.45ENCSR000AEF
HepG2HDAC6ENSG00000094631.1953.9565.2159.58ENCSR985KAT
K562HDAC6ENSG00000094631.1949.9458.0253.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
HDAC6Ribo-STAMP-293TshRNABGRSLV04-9,BGRSLV04-10BGRSLV04-1,BGRSLV04-2NotSatisfiedENCORE2
HDAC6Ribo-STAMP-293TshRNABGRSLV06-3,BGRSLV06-4BGRSLV06-1,BGRSLV06-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HDAC6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HDAC6 RNA is bound by 38 proteins.  







eCLIP assay for HDAC6 is not avaliable on ENCORE database.





38 proteins are bound to HDAC6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4868330448683366+3'-UTR3.554556.49939HepG2ZC3H11A
chrX4867322848673298+3'-UTR,CDS,intron-Proximal3.0514510.12688K562BUD13
chrX4867316648673222+3'-UTR,CDS,intron-Proximal4.7037621.94800K562DDX24
chrX4868318148683281+3'-UTR4.2297016.55217HepG2PABPN1
chrX4867323948673256+3'-UTR,CDS,intron-Proximal4.110917.55042HepG2PPIG
chrX4868318448683269+3'-UTR6.110578.03171K562ZC3H11A
chrX4867316748673278+3'-UTR,CDS,intron-Proximal4.5556221.41259HepG2EFTUD2
chrX4868301748683144+3'-UTR,CDS3.259868.61158HepG2LSM11
chrX4867318648673263+3'-UTR,CDS,intron-Proximal4.0697620.50642K562SF3B4
chrX4868302848683118+3'-UTR3.754685.94926K562DDX55
chrX4868332448683358+3'-UTR3.300624.26492HepG2BCLAF1
chrX4868299248683119+3'-UTR,CDS4.0863411.83014HepG2PABPN1
chrX4868305848683138+3'-UTR5.087967.90397K562PABPC4
chrX4867317248673237+3'-UTR,CDS,intron-Proximal6.4744515.23875K562EFTUD2
chrX4868306948683136+3'-UTR3.835914.17294K562DDX6
chrX4868320448683289+3'-UTR4.754998.80607HepG2EIF3H
chrX4867325048673307+3'-UTR,CDS,intron-Proximal3.325647.48745HepG2PRPF8
chrX4867316448673228+3'-UTR,CDS,intron-Proximal3.482577.61559K562BUD13
chrX4866505648665113+3'-UTR,CDS4.6632518.85072K562DDX24
chrX4866106948661091+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.513916.44455K562ZNF622
chrX4867323548673270+3'-UTR,CDS,intron-Proximal4.8504414.55824K562DDX24
chrX4866128248661315+5'-UTR,CDS,intron-Proximal3.018394.00731K562UCHL5
chrX4866047348660565+5'-UTR,intron-Distal,intron-Proximal3.834765.55742HepG2PRPF4
chrX4866128948661377+5'-UTR,CDS,intron-Proximal3.260889.64645K562ZNF622
chrX4866134548661400+5'-UTR,CDS3.278718.29941HepG2PPIG
chrX4866129648661359+5'-UTR,CDS,intron-Proximal3.361256.24463HepG2GRWD1
chrX4866048148660545+5'-UTR,intron-Distal,intron-Proximal4.048045.37538K562ZNF622
chrX4866067748660772+5'-UTR,intron-Distal,intron-Proximal5.412039.34107HepG2PRPF4
chrX4866130748661407+5'-UTR,CDS,intron-Proximal3.213028.39477HepG2BCLAF1
chrX4866134148661407+5'-UTR,CDS,intron-Proximal5.3055418.06294K562UCHL5
chrX4866133048661407+5'-UTR,CDS,intron-Proximal4.1622524.69497K562DDX24
chrX4866132848661395+5'-UTR,CDS3.341833.09866HepG2FXR2
chrX4867428648674319+CDS,intron-Proximal3.261606.24463HepG2GRWD1
chrX4866117348661188+CDS,intron-Distal,intron-Proximal3.594593.90826K562ZNF622
chrX4867398248673992+CDS3.136686.00788HepG2PPIG
chrX4867337448673409+CDS4.801196.64445K562BUD13
chrX4866158048661624+CDS,intron-Proximal4.6640210.93296HepG2GRWD1
chrX4866403848664079+CDS,intron-Proximal3.340569.60326HepG2BCLAF1
chrX4867336848673413+CDS,intron-Proximal3.005505.65791K562ZNF622
chrX4866472548664778+CDS,intron-Proximal4.382925.09808HepG2SF3A3
chrX4867851148678593+CDS,intron-Distal,intron-Proximal3.373026.83494HepG2PABPN1
chrX4866390148663924+CDS3.088683.26275K562BUD13
chrX4867663248676657+CDS,intron-Distal4.057966.81381K562DDX24
chrX4866159248661624+CDS,intron-Proximal4.4460416.54278K562DDX24
chrX4866477548664853+CDS4.144036.46787HepG2GRWD1
chrX4866403648664141+CDS,intron-Proximal3.078643.28147K562GRWD1
chrX4867374248673812+CDS,intron-Proximal3.839925.86055K562SMNDC1
chrX4868176748681795+CDS3.174313.72868HepG2EIF3H
chrX4866388248663929+CDS4.421284.53233HepG2ZNF800
chrX4866384848663909+CDS4.083183.63122HepG2PRPF4
chrX4866403148664138+CDS,intron-Proximal3.857206.15923K562GPKOW
chrX4867311948673146+CDS4.142928.98140K562DDX24
chrX4867648148676516+CDS3.423104.25147HepG2LSM11
chrX4866153348661539+CDS,intron-Proximal3.533765.28199HepG2GRWD1
chrX4868214248682193+CDS4.282367.67451HepG2LSM11
chrX4866153448661592+CDS,intron-Proximal5.0931630.49240K562DDX24
chrX4868176048681802+CDS3.159274.88110HepG2LSM11
chrX4866391548663929+CDS3.909237.64107HepG2PPIG
chrX4868168748681736+CDS3.123474.36388HepG2EIF3H
chrX4867337348673432+CDS4.3271610.43162HepG2PPIG
chrX4867399748674049+CDS4.4036913.81366HepG2PPIG
chrX4866404748664087+CDS,intron-Proximal5.1162424.54348HepG2PRPF8
chrX4868259548682674+CDS,intron-Distal4.552489.53128HepG2PABPN1
chrX4867374348673808+CDS,intron-Proximal3.7163415.07985K562DDX24
chrX4867431448674381+CDS3.633285.50236K562SRSF1
chrX4867855048678573+CDS,intron-Distal3.543454.22917HepG2PPIG
chrX4867429448674360+CDS3.7027117.02936K562DDX24
chrX4868182948681930+CDS3.7620011.51390HepG2PABPN1
chrX4866403648664058+CDS,intron-Proximal5.1894814.27743K562DDX24
chrX4866666448666731+CDS,intron-Proximal3.6582213.53706K562DDX24
chrX4867457148674653+CDS3.094605.07445HepG2GRWD1
chrX4867399548674043+CDS4.848786.56507HepG2GRWD1
chrX4868195048681993+CDS4.210107.96022HepG2PABPN1
chrX4866404448664132+CDS,intron-Proximal4.017039.30359HepG2BUD13
chrX4866388048663915+CDS3.064985.32969HepG2PPIG
chrX4867428448674392+CDS,intron-Proximal4.2335114.37752HepG2BUD13
chrX4866501748665110+CDS4.0391012.24499HepG2PPIG
chrX4867444148674459+CDS3.678676.41974HepG2PPIG
chrX4867373848673796+CDS,intron-Proximal3.7284813.77793HepG2SF3A3
chrX4866405848664079+CDS,intron-Proximal4.5710320.75402K562DDX24
chrX4868208148682092+CDS,intron-Proximal4.565004.76744HepG2LSM11
chrX4866111848661179+CDS,intron-Distal,intron-Proximal3.145945.80517HepG2GRWD1
chrX4867429648674429+CDS3.3331215.97490K562ZNF622
chrX4867432248674360+CDS3.970298.90178K562SF3B4
chrX4866389848663930+CDS,intron-Proximal5.409779.83658K562DDX24
chrX4868236148682426+CDS,intron-Distal5.519339.99368HepG2LSM11
chrX4867316348673201+CDS,intron-Proximal4.7198823.72867HepG2PRPF8
chrX4867454748674669+CDS,intron-Proximal3.617368.51476HepG2PABPN1
chrX4868295248682967+CDS,intron-Proximal4.335095.03717HepG2PABPN1
chrX4866384448663876+CDS,intron-Proximal3.513428.74772HepG2PPIG
chrX4868196048681997+CDS4.258517.14326HepG2LSM11
chrX4867863848678663+CDS,intron-Distal,intron-Proximal3.453804.91603HepG2LSM11
chrX4866153948661580+CDS3.497449.47203HepG2GRWD1
chrX4866135948661406+CDS5.2845511.31929HepG2GRWD1
chrX4867467548674717+CDS,intron-Proximal3.204035.90285HepG2PRPF8
chrX4867285948672917+CDS3.472098.52682HepG2PPIG
chrX4868170648681749+CDS3.983996.61290HepG2LSM11
chrX4867385748673887+CDS3.824315.37538K562ZNF622
chrX4868158948681663+CDS4.2072513.13639HepG2ZC3H11A
chrX4866501648665056+CDS4.0449614.22956K562DDX24
chrX4867430848674385+CDS4.198167.71597HepG2SRSF1
chrX4867647148676514+CDS4.636026.36164K562DDX24
chrX4867454748674569+CDS,intron-Proximal3.418467.09278HepG2PPIG
chrX4868103248681050+CDS3.741304.93978HepG2BCLAF1
chrX4866140048661407+CDS,intron-Proximal3.502907.38586HepG2PPIG
chrX4868168748681739+CDS3.399367.35917HepG2PABPN1
chrX4867312948673163+CDS,intron-Proximal4.2100021.42455HepG2PRPF8
chrX4866158048661625+CDS,intron-Proximal3.185629.74929HepG2BCLAF1
chrX4868233648682424+CDS,intron-Distal4.427425.23207HepG2ZC3H11A
chrX4866643948666474+CDS,intron-Proximal5.935418.91709K562DDX24
chrX4867332948673384+CDS,intron-Proximal3.948568.33266K562SF3B4
chrX4866501448665105+CDS,intron-Proximal3.686164.00952K562ZNF800
chrX4867424148674322+CDS,intron-Proximal4.6938623.51718K562SF3B4
chrX4867487848674906+CDS4.533784.37348HepG2BCLAF1
chrX4867676748676820+CDS,intron-Distal,intron-Proximal4.509053.89860HepG2PABPN1
chrX4867458448674671+CDS3.5586011.04639HepG2PPIG
chrX4866404348664081+CDS,intron-Proximal4.5404314.09628HepG2PPIG
chrX4867343848673493+CDS,intron-Proximal4.5674814.59055HepG2PRPF8
chrX4866666948666734+CDS,intron-Proximal3.182285.60859HepG2PPIG
chrX4867308348673108+CDS3.673844.17155HepG2BCLAF1
chrX4868145648681502+CDS4.862755.83017HepG2LSM11
chrX4867310648673148+CDS,intron-Proximal4.253619.86479HepG2PPIG
chrX4866153348661598+CDS,intron-Proximal3.7474819.99939HepG2PPIG
chrX4868159648681642+CDS3.812984.25221HepG2LSM11
chrX4867373248673801+CDS,intron-Proximal4.3566258.52165K562SF3B4
chrX4866477248664872+CDS,intron-Proximal3.6365923.47541K562DDX24
chrX4867429848674416+CDS4.0482616.11202K562UCHL5
chrX4868267448682704+CDS,intron-Distal4.021826.99061HepG2PABPN1
chrX4867648148676511+CDS3.686454.13746HepG2PPIG
chrX4866384348663895+CDS,intron-Proximal3.529247.95442HepG2GRWD1
chrX4866384348663880+CDS,intron-Proximal4.2430815.77708K562DDX24
chrX4866159348661617+CDS3.096655.34405K562ZNF622
chrX4866384448663877+CDS,intron-Proximal3.287865.86176HepG2BCLAF1
chrX4866473748664823+CDS,intron-Proximal3.205365.20150K562GPKOW
chrX4866403748664058+CDS,intron-Proximal3.079604.55250HepG2GRWD1
chrX4866403648664043+CDS,intron-Proximal3.688426.27819HepG2PPIG
chrX4867372948673797+CDS,intron-Proximal3.531019.94839HepG2TIAL1
chrX4867430048674336+CDS4.458374.46589HepG2PABPN1
chrX4867429148674378+CDS3.4033913.30583HepG2PPIG
chrX4866405848664137+CDS,intron-Proximal3.223966.42750HepG2GRWD1
chrX4867662648676653+CDS,intron-Distal,intron-Proximal3.512875.56491HepG2BCLAF1
chrX4867284948672945+CDS4.3549427.20746K562DDX24
chrX4867455048674645+CDS4.146334.84679HepG2UCHL5
chrX4866159848661623+CDS4.8499413.54586HepG2PPIG
chrX4867345748673465+CDS,intron-Proximal5.603319.95272K562AQR
chrX4867648948676515+CDS3.229625.79905HepG2BCLAF1
chrX4866112248661187+CDS,intron-Distal,intron-Proximal3.027035.86433K562UCHL5
chrX4868158548681646+CDS3.891509.01392HepG2EIF3H
chrX4867333048673402+CDS,intron-Proximal4.5042513.69369K562EFTUD2
chrX4867379048673862+CDS,intron-Proximal3.884183.36483HepG2G3BP1
chrX4867666048676822+CDS,intron-Distal,intron-Proximal4.853776.84805K562FMR1
chrX4866407748664081+CDS,intron-Proximal5.3950422.38149K562AQR
chrX4866650648666544+CDS4.139489.14517K562DDX24
chrX4868159148681642+CDS4.698114.88201K562ZC3H11A
chrX4867377048673829+CDS,intron-Proximal3.8812810.82383HepG2U2AF2
chrX4867384648673897+CDS4.1440013.94981HepG2PPIG
chrX4867502748675080+CDS,intron-Proximal3.932625.26367K562AQR
chrX4867663048676742+CDS,intron-Distal4.351309.81633HepG2PABPN1
chrX4868158248681629+CDS4.210107.96022HepG2PABPN1
chrX4867326748673298+CDS4.470978.38781HepG2PPIG
chrX4866389048663929+CDS3.340885.76403K562UCHL5
chrX4867292748672973+CDS4.069333.83925K562YBX3
chrX4867376148673833+CDS,intron-Proximal3.442349.22568K562AQR
chrX4866153348661589+CDS,intron-Proximal4.4667817.18054K562UCHL5
chrX4867703348677091+intron-Distal4.299889.00535K562TARDBP
chrX4867757148677650+intron-Distal6.5012413.45380K562EIF4G2
chrX4866072348660806+intron-Distal,intron-Proximal3.222463.99385K562CSTF2T
chrX4867747248677549+intron-Distal6.0317816.76921K562TARDBP
chrX4867737948677453+intron-Distal5.635045.03841K562AATF
chrX4867829948678402+intron-Distal5.8885514.72968HepG2PTBP1
chrX4867731848677374+intron-Distal3.937693.09815K562IGF2BP1
chrX4866068248660796+intron-Distal,intron-Proximal4.681825.23961K562GTF2F1
chrX4867741248677449+intron-Distal4.311704.85626K562TARDBP
chrX4867517248675226+intron-Distal4.176724.35952HepG2PRPF4
chrX4867757148677639+intron-Distal5.3779210.50009K562TARDBP
chrX4867732048677375+intron-Distal4.1874113.65130K562TARDBP
chrX4867731248677392+intron-Distal7.1016923.92638K562EIF4G2
chrX4867727348677312+intron-Distal5.7490610.49187K562EIF4G2
chrX4867518148675234+intron-Distal4.345475.68247K562SF3B4
chrX4867710548677173+intron-Distal3.494424.19285K562IGF2BP1
chrX4867747648677537+intron-Distal7.0461020.92297K562EIF4G2
chrX4866426548664325+intron-Distal3.612424.90204K562TARDBP
chrX4867714048677197+intron-Distal5.6572113.86598K562EIF4G2
chrX4867726548677320+intron-Distal5.4630311.00963K562TARDBP
chrX4867711048677200+intron-Distal5.2156518.26316K562TARDBP
chrX4867705348677090+intron-Distal3.940737.39675K562EIF4G2
chrX4867829548678400+intron-Distal4.328138.27898K562PTBP1
chrX4867739448677451+intron-Distal5.9157535.28808K562EIF4G2
chrX4866416948664201+intron-Distal,intron-Proximal4.032833.26547HepG2HLTF
chrX4867763948677679+intron-Distal4.052637.97776K562TARDBP
chrX4867408148674110+intron-Proximal4.774447.47028K562DDX24
chrX4867407748674110+intron-Proximal4.174658.76959K562SF3B4
chrX4866408748664145+intron-Proximal4.5145924.79964HepG2PRPF8
chrX4866407948664141+intron-Proximal3.4592612.28203HepG2BCLAF1
chrX4867373848673789+intron-Proximal4.740754.57682HepG2SF3B4
chrX4866408148664141+intron-Proximal5.3004535.75572K562AQR
chrX4867406348674125+intron-Proximal4.5600412.28583HepG2EFTUD2
chrX4867373148673784+intron-Proximal3.5034913.66294K562EFTUD2
chrX4867346348673488+intron-Proximal4.293565.24452HepG2PPIG
chrX4867408048674116+intron-Proximal3.739864.74268K562UCHL5
chrX4867347348673515+intron-Proximal4.651574.12401HepG2U2AF2
chrX4866472348664775+intron-Proximal4.591396.11702K562SF3B4
chrX4866408248664123+intron-Proximal4.572845.56912HepG2AQR
chrX4866408748664126+intron-Proximal4.6923410.79453K562DDX24
chrX4866408048664172+intron-Proximal3.320938.30488K562PRPF8
chrX4866408148664131+intron-Proximal4.9976610.18181HepG2PPIG
chrX4866472048664771+intron-Proximal3.756645.48218HepG2SF3B4
chrX4867406348674119+intron-Proximal3.209205.82155HepG2PRPF4
chrX4867407648674107+intron-Proximal3.962818.12130HepG2PPIG
chrX4867346548673501+intron-Proximal4.8748811.12698K562AQR
chrX4867406848674129+intron-Proximal4.134996.24165HepG2SF3B4
chrX4867330748673342+intron-Proximal3.972744.71457HepG2PRPF8
chrX4867330448673364+intron-Proximal4.617969.49243HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HDAC6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HDAC6 is not available on ENCORE database.

  • 101 RBPs can affect the levels of HDAC6.  








The Knockdown/knockout RNA-Seq assay for HDAC6 is not available on ENCORE database.





101 RBPs can affect the gene expression of HDAC6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HDAC6ENSG00000094631.141100.552001563.27470-0.506305.464604.00500HepG2AATF
HDAC6ENSG00000094631.141906.314102465.04160-0.370807.132906.25000HepG2ACO1
HDAC6ENSG00000094631.141953.476701467.571700.412503.684502.55300HepG2ADAR
HDAC6ENSG00000094631.141561.480703160.42150-1.0172015.0315013.89210HepG2AKAP1
HDAC6ENSG00000094631.142040.035402614.90460-0.358202.787902.00080HepG2ASCC1
HDAC6ENSG00000094631.143391.524002434.776100.478003.520502.40760HepG2CCAR1
HDAC6ENSG00000094631.141674.908601196.372200.485304.579103.71420HepG2CPSF6
HDAC6ENSG00000094631.141959.244902348.31510-0.261302.790602.14580HepG2CELF1
HDAC6ENSG00000094631.142480.083201724.495300.524106.674805.67110HepG2DDX21
HDAC6ENSG00000094631.142035.374901687.775800.270102.347401.51230HepG2DDX24
HDAC6ENSG00000094631.143330.878402358.323300.4980011.7920010.59560HepG2DKC1
HDAC6ENSG00000094631.142048.448701477.660900.471105.485204.52520HepG2DNAJC21
HDAC6ENSG00000094631.144057.323402499.903800.698609.354208.30320HepG2EIF2S1
HDAC6ENSG00000094631.141201.825701579.76700-0.394502.923801.99810HepG2EIF3D
HDAC6ENSG00000094631.142043.065301628.657100.327003.273902.10790HepG2EIF3G
HDAC6ENSG00000094631.144598.559102762.496100.735108.933107.78980HepG2EIF4A3
HDAC6ENSG00000094631.143054.134902217.479400.461704.058202.75660HepG2ESF1
HDAC6ENSG00000094631.144422.420903178.408100.4764011.045809.97460HepG2ETF1
HDAC6ENSG00000094631.141561.083502408.60230-0.625606.305505.04460HepG2EWSR1
HDAC6ENSG00000094631.141702.356802585.41130-0.602903.814602.92320HepG2FIP1L1
HDAC6ENSG00000094631.144059.081202745.565900.563906.679505.28460HepG2G3BP2
HDAC6ENSG00000094631.143765.095901356.093901.4731033.4152031.48000HepG2GPKOW
HDAC6ENSG00000094631.142516.313501491.820200.7541011.6804010.49900HepG2HNRNPA1
HDAC6ENSG00000094631.142019.504901659.459700.283202.230301.60110HepG2HNRNPC
HDAC6ENSG00000094631.142686.638301615.055000.7341020.9072019.18920HepG2HNRNPF
HDAC6ENSG00000094631.142712.901501294.153301.0677020.4167018.95340HepG2HNRNPLL
HDAC6ENSG00000094631.141276.052501783.20700-0.482803.492402.43210HepG2HNRNPM
HDAC6ENSG00000094631.142057.066301648.482000.319402.740002.13560HepG2HNRNPU
HDAC6ENSG00000094631.142520.372401590.354200.6642011.7578010.36460HepG2IGF2BP1
HDAC6ENSG00000094631.144055.753202628.310000.625707.774706.70130HepG2IGF2BP2
HDAC6ENSG00000094631.142094.534001683.855200.314802.763202.03080HepG2ILF2
HDAC6ENSG00000094631.143238.076602369.040700.450702.777401.45430HepG2ILF3
HDAC6ENSG00000094631.141307.864601759.49420-0.427904.055002.67160HepG2LARP7
HDAC6ENSG00000094631.142107.879402804.31220-0.411903.125602.45860HepG2MATR3
HDAC6ENSG00000094631.142408.964201320.058900.867708.102706.41260HepG2MTPAP
HDAC6ENSG00000094631.142004.375202503.73430-0.320903.760202.86910HepG2NOL12
HDAC6ENSG00000094631.142215.954401147.577700.9492016.5223014.87360HepG2NSUN2
HDAC6ENSG00000094631.143474.082802221.366500.645104.020002.93700HepG2PABPC1
HDAC6ENSG00000094631.141181.861901631.60790-0.465203.403302.47290HepG2PARN
HDAC6ENSG00000094631.141975.436202708.67170-0.455409.584708.56540HepG2PCBP1
HDAC6ENSG00000094631.141903.993501470.299300.372802.308601.62820HepG2PPIL4
HDAC6ENSG00000094631.142080.197701776.223000.227802.570101.82200HepG2PRPF4
HDAC6ENSG00000094631.141863.068002756.18430-0.5650013.7305012.69460HepG2PTBP1
HDAC6ENSG00000094631.144330.395402390.052800.8574010.565109.50110HepG2PUF60
HDAC6ENSG00000094631.141816.793702537.16920-0.4818010.089209.10500HepG2PUM1
HDAC6ENSG00000094631.144535.163902984.995200.6033013.7778012.53780HepG2QKI
HDAC6ENSG00000094631.14510.180701749.34760-1.7777021.7485019.95140HepG2RAVER1
HDAC6ENSG00000094631.141038.431002656.51740-1.3551038.6973037.19730HepG2RBM22
HDAC6ENSG00000094631.141649.016302121.73340-0.363602.936201.91300HepG2RBM27
HDAC6ENSG00000094631.142227.768801740.016900.356402.974202.26890HepG2RPLP0
HDAC6ENSG00000094631.142530.727501719.244200.557703.666402.58020HepG2RPS10
HDAC6ENSG00000094631.141138.339201537.18900-0.433404.589303.81880HepG2RPS19
HDAC6ENSG00000094631.14767.316901146.55190-0.579404.657203.66750HepG2RRP9
HDAC6ENSG00000094631.141931.555501467.995700.395802.538801.91730HepG2SAFB2
HDAC6ENSG00000094631.142371.136603258.49660-0.458603.382602.63480HepG2SF3A3
HDAC6ENSG00000094631.141673.114901280.905700.385303.320602.55450HepG2SF3B1
HDAC6ENSG00000094631.142860.206902291.734500.319606.555205.54940HepG2SLBP
HDAC6ENSG00000094631.141841.139403000.36160-0.7045017.4275016.45470HepG2SRFBP1
HDAC6ENSG00000094631.141910.499102995.17140-0.6487019.9357018.91160HepG2SRSF1
HDAC6ENSG00000094631.14998.080101378.40220-0.465802.989801.94230HepG2SRSF3
HDAC6ENSG00000094631.142126.306001586.785900.422106.896805.87910HepG2SRSF7
HDAC6ENSG00000094631.141328.835702436.73750-0.8748031.6639030.19620HepG2SRSF9
HDAC6ENSG00000094631.146690.080702604.889701.36070101.4937099.58020HepG2SSB
HDAC6ENSG00000094631.142251.304001496.422300.589104.690103.84520HepG2SUPV3L1
HDAC6ENSG00000094631.142065.045401261.630100.7108010.126108.86590HepG2TARDBP
HDAC6ENSG00000094631.14763.383701002.88960-0.393702.205701.30460HepG2TFIP11
HDAC6ENSG00000094631.142176.478101601.487300.442504.842904.21910HepG2TIAL1
HDAC6ENSG00000094631.141451.673402211.09430-0.607003.644402.92810HepG2U2AF1
HDAC6ENSG00000094631.142267.276901369.789800.726905.177603.78050HepG2UPF2
HDAC6ENSG00000094631.142051.686202789.97760-0.443409.604108.59750HepG2UTP3
HDAC6ENSG00000094631.143008.066402187.121300.459702.935401.79990HepG2XPO5
HDAC6ENSG00000094631.142686.622301473.069100.8669011.5884010.12400HepG2XRN2
HDAC6ENSG00000094631.141493.629801878.80560-0.331002.845401.64610K562AARS
HDAC6ENSG00000094631.146839.225605638.250200.278502.771301.78830K562AKAP8
HDAC6ENSG00000094631.146553.906905338.917200.295703.047902.36160K562AKAP8L
HDAC6ENSG00000094631.142626.511303445.42950-0.391502.169301.63870K562AQR
HDAC6ENSG00000094631.142181.653301599.039700.448104.240203.15180K562BOP1
HDAC6ENSG00000094631.141782.253101500.287700.248402.259301.32340K562CSTF2
HDAC6ENSG00000094631.142337.819103311.29830-0.5022011.8670010.62030K562DDX47
HDAC6ENSG00000094631.143274.333802705.924500.275004.169302.66370K562EIF2S1
HDAC6ENSG00000094631.142995.024402367.705300.339005.038404.10880K562EIF2S2
HDAC6ENSG00000094631.141103.430201808.75240-0.713004.642503.30760K562EIF3A
HDAC6ENSG00000094631.142057.598702573.63030-0.322802.809701.98210K562EIF4A3
HDAC6ENSG00000094631.143045.083202317.756800.393704.548103.00410K562EIF4B
HDAC6ENSG00000094631.141521.744202676.47850-0.8146021.0988019.53980K562FXR1
HDAC6ENSG00000094631.14850.440601645.67430-0.952406.383805.21140K562G3BP2
HDAC6ENSG00000094631.142184.349501623.152500.428304.631703.60900K562GPKOW
HDAC6ENSG00000094631.142671.516501835.614700.541307.629705.66060K562HNRNPF
HDAC6ENSG00000094631.141677.482302179.97210-0.378003.012801.72170K562HNRNPK
HDAC6ENSG00000094631.142324.090301833.173000.342203.417201.66160K562LSM11
HDAC6ENSG00000094631.141723.453602294.22980-0.412703.705202.72310K562MAGOH
HDAC6ENSG00000094631.143730.503303187.371100.226904.205503.30680K562NSUN2
HDAC6ENSG00000094631.142572.495702023.980400.345902.727201.32280K562NUSAP1
HDAC6ENSG00000094631.144893.541202895.907500.756804.028902.77770K562PABPN1
HDAC6ENSG00000094631.142600.816202006.795600.374003.611401.95410K562PHF6
HDAC6ENSG00000094631.145427.378603442.688800.656602.817801.36180K562PPP1R8
HDAC6ENSG00000094631.141004.139101762.49700-0.811705.265704.23050K562PRPF8
HDAC6ENSG00000094631.142611.101601842.874300.502606.765205.24480K562PSIP1
HDAC6ENSG00000094631.141509.904902229.06900-0.562007.623806.55800K562PTBP1
HDAC6ENSG00000094631.143699.422704725.60340-0.353204.063003.08060K562PUF60
HDAC6ENSG00000094631.141474.388102136.81840-0.535305.714604.45210K562RBM22
HDAC6ENSG00000094631.141743.432401400.961900.315403.525901.74160K562RPS10
HDAC6ENSG00000094631.141147.256301794.81080-0.645603.885302.91580K562RPS19
HDAC6ENSG00000094631.142014.673502491.70770-0.306602.273301.37650K562RPS3
HDAC6ENSG00000094631.141707.410002103.19790-0.300802.640201.58470K562SAFB
HDAC6ENSG00000094631.144288.596902648.250400.695402.847301.62030K562SF1
HDAC6ENSG00000094631.145067.758603228.321100.650502.717701.43350K562SFPQ
HDAC6ENSG00000094631.142067.906701594.137300.375303.517002.32400K562SRFBP1
HDAC6ENSG00000094631.141571.621502185.35260-0.475605.044004.09320K562SRSF1
HDAC6ENSG00000094631.142722.826102064.202400.399403.956802.66320K562SRSF5
HDAC6ENSG00000094631.141717.553202367.55340-0.463006.550105.27850K562SYNCRIP
HDAC6ENSG00000094631.143027.396702133.269000.504903.616102.66110K562TIA1
HDAC6ENSG00000094631.142336.734101772.503800.398603.279302.25500K562TIAL1
HDAC6ENSG00000094631.142816.247502093.992600.427404.646703.16380K562TRA2A
HDAC6ENSG00000094631.142393.967701883.360200.346003.223502.18450K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HDAC6 is not available on ENCORE database.





29 RBPs can affect the splicing of HDAC6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHDAC6ENSG00000094631.14chrX+486757324867586648674871486750404867644748676516-0.371000.000200.00562excludedK562SF3B4
SEHDAC6ENSG00000094631.14chrX+486825754868270448682081486821954868295348683386-0.174000.000000.00000excludedHepG2U2AF1
SEHDAC6ENSG00000094631.14chrX+486757324867586648674871486750404867644748676516-0.400000.000330.00796excludedHepG2U2AF1
SEHDAC6ENSG00000094631.14chrX+486757324867586648674871486750404867644748676516-0.402000.000000.00000excludedHepG2HNRNPK
SEHDAC6ENSG00000094631.14chrX+486823314868247848682081486821954868295348683166-0.397000.000000.00008excludedHepG2U2AF2
SEHDAC6ENSG00000094631.14chrX+486766264867681948676447486765164867851248678662-0.125000.001610.05724excludedK562FXR1
SEHDAC6ENSG00000094631.14chrX+486757324867586648674871486750404867644748676516-0.218000.000410.02273excludedHepG2SF3B4
SEHDAC6ENSG00000094631.14chrX+486666644866673348666439486665444867284648672973-0.098000.000270.00675excludedK562U2AF2
SEHDAC6ENSG00000094631.14chrX+486757324867586648674871486750404867644748676516-0.231000.000590.02498excludedK562TARDBP
RIHDAC6ENSG00000094631.14chrX+486730814867330048673081486731474867324048673300-0.220000.001650.08605excludedK562NONO
RIHDAC6ENSG00000094631.14chrX+486733684867389748673368486734584867379048673897-0.254000.000990.06619excludedK562NONO
RIHDAC6ENSG00000094631.14chrX+4867308148673300486730814867314748673240486733000.150000.001760.07920includedK562DROSHA
RIHDAC6ENSG00000094631.14chrX+4867308148673300486730814867314748673240486733000.162000.008480.04848includedK562PUS1
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.244000.000020.00026includedK562PUS1
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.253000.000000.00003includedK562PUS1
RIHDAC6ENSG00000094631.14chrX+4867379048674033486737904867389748673981486740330.110000.000000.00000includedK562PUS1
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.202000.002020.02373includedHepG2SF3A3
RIHDAC6ENSG00000094631.14chrX+4867379048674039486737904867389748673981486740390.241000.000000.00000includedHepG2U2AF2
RIHDAC6ENSG00000094631.14chrX+486730814867330048673081486731474867324048673300-0.356000.000030.00145excludedK562SRSF1
RIHDAC6ENSG00000094631.14chrX+486733684867389748673368486734584867379048673897-0.305000.000250.00796excludedK562SRSF1
RIHDAC6ENSG00000094631.14chrX+486640374866487148664037486640784866477448664871-0.325000.002570.07071excludedK562HNRNPUL1
RIHDAC6ENSG00000094631.14chrX+486640374866487148664037486640784866477448664871-0.195000.000160.02162excludedK562UCHL5
RIHDAC6ENSG00000094631.14chrX+4866092148661145486609214866095848661069486611450.099000.000660.00973includedK562AGGF1
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.157000.003980.06527includedHepG2IGF2BP3
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.287000.000010.00017includedHepG2QKI
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.207000.000730.01028includedHepG2QKI
RIHDAC6ENSG00000094631.14chrX+486730814867330048673081486731474867324048673300-0.266000.000450.04441excludedK562XRN2
RIHDAC6ENSG00000094631.14chrX+4867644748676819486764474867651648676626486768190.177000.002730.05202includedK562RBM22
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.171000.002070.02088includedK562AKAP8L
RIHDAC6ENSG00000094631.14chrX+4867379048674039486737904867389748673981486740390.086000.000000.00000includedK562AKAP8L
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.141000.010840.08266includedK562AKAP8L
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.210000.000410.00574includedHepG2TAF15
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.317000.000010.00027includedHepG2TAF15
RIHDAC6ENSG00000094631.14chrX+486640374866487148664037486640784866477448664871-0.207000.000030.00522excludedK562KHSRP
RIHDAC6ENSG00000094631.14chrX+4867379048674039486737904867389748673981486740390.056000.000270.00418includedK562RBM15
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.229000.000060.00109includedK562RBM15
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.189000.000250.00703includedHepG2G3BP1
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.114000.008720.07748includedHepG2NCBP2
RIHDAC6ENSG00000094631.14chrX+4867644748676819486764474867651648676626486768190.147000.000070.00160includedHepG2NCBP2
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.332000.000000.00002includedHepG2SF3B4
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.289000.000850.01825includedHepG2FUBP3
RIHDAC6ENSG00000094631.14chrX+4867644748676819486764474867651648676626486768190.253000.004140.03893includedHepG2RBM22
RIHDAC6ENSG00000094631.14chrX+4867308148673300486730814867314748673240486733000.259000.000220.00365includedHepG2RBM22
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.361000.000000.00000includedHepG2HNRNPK
RIHDAC6ENSG00000094631.14chrX+4866403748664871486640374866407848664774486648710.190000.000870.01289includedK562UTP18
RIHDAC6ENSG00000094631.14chrX+4867336848673897486733684867345848673790486738970.185000.003160.03658includedK562UTP18
RIHDAC6ENSG00000094631.14chrX+486733684867389748673368486734584867379048673897-0.164000.001990.01254excludedK562AQR
RIHDAC6ENSG00000094631.14chrX+4867644748676819486764474867651648676626486768190.204000.000510.02233includedK562TARDBP
RIHDAC6ENSG00000094631.14chrX+486640374866487148664037486640784866477448664871-0.199000.000400.01049excludedK562PTBP1
RIHDAC6ENSG00000094631.14chrX+486733684867389748673368486734584867379048673897-0.191000.007380.08928excludedK562FXR1
MXEHDAC6ENSG00000094631.14chrX+48672846486728814867292648673147486666644866673348673240486733000.153000.007190.090101includedK562PUS1
MXEHDAC6ENSG00000094631.14chrX+4868233148682478486825754868270448682081486821954868295348683386-0.101000.000220.012062includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HDAC6 is not avaliable on ENCORE database.