GNPDA1

General Information

Gene Name       : GNPDA1
Gene ID             : ENSG00000113552.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GNPDA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GNPDA1ENSG00000113552.153.283.763.52ENCSR000AEF
HepG2GNPDA1ENSG00000113552.1539.9850.1445.06ENCSR985KAT
K562GNPDA1ENSG00000113552.1533.3543.0938.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GNPDA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GNPDA1 RNA is bound by 9 proteins.  







eCLIP assay for GNPDA1 is not avaliable on ENCORE database.





9 proteins are bound to GNPDA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5141381140141381221-3'-UTR,intron-Distal,intron-Proximal3.909258.69423K562PUM2
chr5141380964141380978-3'-UTR,intron-Distal5.398669.55253K562LIN28B
chr5141380674141380712-3'-UTR,intron-Distal3.860404.50550K562UPF1
chr5141380758141380847-3'-UTR,intron-Distal3.821996.55257K562UPF1
chr5141380284141380344-3'-UTR,intron-Distal3.215445.78757K562UPF1
chr5141380749141380808-3'-UTR,intron-Distal4.362173.39858K562IGF2BP2
chr5141380454141380587-3'-UTR,intron-Distal4.8886117.08773K562UPF1
chr5141380891141380976-3'-UTR,intron-Distal6.4601314.47018HepG2LIN28B
chr5141381398141381482-3'-UTR,intron-Distal5.583717.22380HepG2SUB1
chr5141380896141380964-3'-UTR,intron-Distal6.8353263.00496K562LIN28B
chr5141380273141380351-3'-UTR,intron-Distal5.8868410.21115HepG2SUB1
chr5141380479141380538-3'-UTR,intron-Distal3.796358.06079K562IGF2BP2
chr5141380546141380607-3'-UTR,intron-Distal3.124933.78871K562IGF2BP1
chr5141380344141380454-3'-UTR,intron-Distal5.0067911.97213K562UPF1
chr5141391512141391608-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.332358.86075K562DDX3X
chr5141392498141392591-5'-UTR,intron-Distal,intron-Proximal4.9433912.77088HepG2PRPF8
chr5141385680141385752-CDS,intron-Distal,intron-Proximal4.996517.36776HepG2PRPF8
chr5141385788141385840-CDS,intron-Distal3.824593.65750K562YBX3
chr5141391476141391528-CDS,intron-Distal,intron-Proximal3.869377.06377K562YBX3
chr5141391528141391583-CDS,intron-Distal3.765589.26008K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GNPDA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GNPDA1 is not available on ENCORE database.

  • 115 RBPs can affect the levels of GNPDA1.  








The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.





115 RBPs can affect the gene expression of GNPDA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GNPDA1ENSG00000113552.11861.64900607.998800.502906.711705.84900HepG2ACO1
GNPDA1ENSG00000113552.112216.84390865.608301.3566023.2696021.89420HepG2AKAP1
GNPDA1ENSG00000113552.11998.16150716.231200.478703.598102.70510HepG2ASCC1
GNPDA1ENSG00000113552.111531.406801211.215000.338304.215603.40000HepG2AUH
GNPDA1ENSG00000113552.11428.25580748.22980-0.805007.127205.76330HepG2BCLAF1
GNPDA1ENSG00000113552.11974.96750678.053200.523904.840304.07680HepG2BOP1
GNPDA1ENSG00000113552.111071.99920737.365000.539803.548502.42980HepG2CCAR1
GNPDA1ENSG00000113552.111429.06230680.464701.0704013.7689012.19390HepG2CIRBP
GNPDA1ENSG00000113552.11274.14080607.92300-1.1490021.9222020.44830HepG2CKAP4
GNPDA1ENSG00000113552.11342.17600622.50200-0.863308.353707.21300HepG2CPSF6
GNPDA1ENSG00000113552.11691.38130531.900700.378202.355001.35600HepG2CSTF2
GNPDA1ENSG00000113552.111481.08400939.215400.6570013.1765011.97790HepG2CELF1
GNPDA1ENSG00000113552.111204.231001009.776700.254003.044302.27290HepG2DAZAP1
GNPDA1ENSG00000113552.11854.18520542.307200.655305.738804.79990HepG2DDX21
GNPDA1ENSG00000113552.111393.39690829.215100.748708.273207.24190HepG2DDX3X
GNPDA1ENSG00000113552.11362.75000684.76580-0.916608.958807.93040HepG2EIF2S1
GNPDA1ENSG00000113552.11558.90280367.203200.605903.866002.80860HepG2EIF3D
GNPDA1ENSG00000113552.11465.99970756.77820-0.699505.624104.71310HepG2EIF4A3
GNPDA1ENSG00000113552.111572.75200736.769601.0939012.2042010.81270HepG2EIF4B
GNPDA1ENSG00000113552.11414.75630996.30180-1.2643031.1943029.04540HepG2EIF4G1
GNPDA1ENSG00000113552.11629.26780954.37630-0.600905.614304.47710HepG2EIF4G2
GNPDA1ENSG00000113552.11740.73940594.173500.318002.103101.37630HepG2EWSR1
GNPDA1ENSG00000113552.11518.01120392.361200.400702.485801.73980HepG2FUBP3
GNPDA1ENSG00000113552.11861.87500624.284900.465202.433101.38310HepG2FUS
GNPDA1ENSG00000113552.11425.74600708.27320-0.734306.132205.15930HepG2G3BP1
GNPDA1ENSG00000113552.11186.54750326.94440-0.809505.251804.01270HepG2GEMIN5
GNPDA1ENSG00000113552.11510.89580705.68790-0.466002.737302.09940HepG2GPKOW
GNPDA1ENSG00000113552.11653.25580426.785500.614003.485702.23220HepG2GRSF1
GNPDA1ENSG00000113552.11334.58490589.50070-0.817107.701806.59220HepG2HNRNPC
GNPDA1ENSG00000113552.11566.90430924.08700-0.7049011.3346010.01510HepG2HNRNPF
GNPDA1ENSG00000113552.11962.40800717.073800.424403.144002.40050HepG2HNRNPK
GNPDA1ENSG00000113552.11267.10500673.44790-1.3342017.1578015.77960HepG2HNRNPLL
GNPDA1ENSG00000113552.11661.21060421.268600.650302.607101.68150HepG2HNRNPM
GNPDA1ENSG00000113552.11606.88770393.816800.623803.799002.35530HepG2HSPD1
GNPDA1ENSG00000113552.11506.20940909.96590-0.8461012.4799011.05730HepG2IGF2BP1
GNPDA1ENSG00000113552.111294.50320719.962100.846309.848908.66210HepG2IGF2BP2
GNPDA1ENSG00000113552.11497.23400724.12550-0.542303.041601.98380HepG2KHSRP
GNPDA1ENSG00000113552.11404.38490555.82220-0.458904.513503.22330HepG2KIF1C
GNPDA1ENSG00000113552.11435.53010768.01830-0.818407.097306.12170HepG2MATR3
GNPDA1ENSG00000113552.11592.37910384.305000.624203.048901.94400HepG2METAP2
GNPDA1ENSG00000113552.11395.24910686.75640-0.797004.807303.50680HepG2MTPAP
GNPDA1ENSG00000113552.111116.90130786.122000.506603.915403.16580HepG2NCBP2
GNPDA1ENSG00000113552.11367.99700517.79220-0.492703.332601.78290HepG2NIP7
GNPDA1ENSG00000113552.11391.89960597.11610-0.607504.352603.42020HepG2NSUN2
GNPDA1ENSG00000113552.11922.43820672.316800.456205.322404.52420HepG2PCBP1
GNPDA1ENSG00000113552.11373.75620522.31020-0.482804.008303.13740HepG2PPIL4
GNPDA1ENSG00000113552.11829.35540684.075300.277701.998601.52000HepG2PTBP1
GNPDA1ENSG00000113552.111443.243301014.720800.5081010.943309.92770HepG2PUM1
GNPDA1ENSG00000113552.111245.79290570.328001.127109.216507.98040HepG2RAVER1
GNPDA1ENSG00000113552.11299.02400583.29840-0.9640012.5720010.95330HepG2RBM15
GNPDA1ENSG00000113552.113824.348901162.290401.7181027.3143026.02020HepG2RBM22
GNPDA1ENSG00000113552.11486.39700672.42390-0.467203.772802.99410HepG2RBM25
GNPDA1ENSG00000113552.11760.05520560.746100.438702.377101.39600HepG2RCC2
GNPDA1ENSG00000113552.11423.12980761.33690-0.8474012.9080011.89840HepG2NELFE
GNPDA1ENSG00000113552.11619.42920995.40810-0.684307.412906.37550HepG2RPLP0
GNPDA1ENSG00000113552.11585.73380357.314800.712906.669705.76190HepG2RPS19
GNPDA1ENSG00000113552.111003.22840650.093300.625805.887404.31140HepG2RPS5
GNPDA1ENSG00000113552.111026.36410646.079000.667705.699104.60960HepG2RRP9
GNPDA1ENSG00000113552.11399.28330521.50250-0.385303.039502.37010HepG2SAFB2
GNPDA1ENSG00000113552.111014.41300615.718900.720205.872004.86440HepG2SF3A3
GNPDA1ENSG00000113552.11998.65430666.599700.583105.593604.61800HepG2SF3B1
GNPDA1ENSG00000113552.11663.94470916.59190-0.465205.931304.96600HepG2SLBP
GNPDA1ENSG00000113552.111019.36150608.155200.7451015.9900014.63660HepG2SMN1
GNPDA1ENSG00000113552.11327.17760741.70210-1.180809.204507.78540HepG2SNRNP70
GNPDA1ENSG00000113552.112052.762101312.778800.6448017.1680016.19950HepG2SRFBP1
GNPDA1ENSG00000113552.111445.88070743.430500.9596025.0627023.95100HepG2SRSF1
GNPDA1ENSG00000113552.111301.45580943.813000.463505.099804.29060HepG2SRSF5
GNPDA1ENSG00000113552.11610.72920907.87110-0.572008.001606.91820HepG2SRSF7
GNPDA1ENSG00000113552.11811.60880604.800000.424201.818701.35380HepG2SRSF9
GNPDA1ENSG00000113552.11633.636201139.82820-0.8471018.7554017.67410HepG2SSB
GNPDA1ENSG00000113552.11565.20060392.372700.526403.288301.89500HepG2SSRP1
GNPDA1ENSG00000113552.11592.64300397.245800.577003.278301.82580HepG2SUGP2
GNPDA1ENSG00000113552.11858.23690668.158900.361102.937002.36130HepG2TAF15
GNPDA1ENSG00000113552.11149.50740385.39910-1.366107.575405.90980HepG2TBRG4
GNPDA1ENSG00000113552.111119.02490522.221001.0994010.737709.47990HepG2U2AF1
GNPDA1ENSG00000113552.11815.79650424.608700.942002.711401.73340HepG2U2AF2
GNPDA1ENSG00000113552.11652.42700988.54720-0.599504.180903.14070HepG2UBE2L3
GNPDA1ENSG00000113552.11713.61500546.046700.386003.781902.98530HepG2UPF1
GNPDA1ENSG00000113552.11426.29690771.77380-0.856306.319804.75960HepG2UPF2
GNPDA1ENSG00000113552.11786.53420561.273100.486704.343003.06520HepG2UTP18
GNPDA1ENSG00000113552.111050.53910527.189400.9946023.0485021.56840HepG2UTP3
GNPDA1ENSG00000113552.11926.85680627.194300.563303.446702.26510HepG2XRCC6
GNPDA1ENSG00000113552.11445.37960623.35650-0.485005.152604.28490HepG2ZC3H8
GNPDA1ENSG00000113552.11779.08300600.549400.375404.131303.49980HepG2ZNF622
GNPDA1ENSG00000113552.11346.27420569.77750-0.718504.777703.02740HepG2ZRANB2
GNPDA1ENSG00000113552.11952.96360555.121500.7795013.4901012.33970K562AGGF1
GNPDA1ENSG00000113552.11847.89430609.978700.475003.996202.77070K562AKAP8
GNPDA1ENSG00000113552.111074.67720577.625200.8956013.0636011.48770K562AKAP8L
GNPDA1ENSG00000113552.11892.49460606.060400.558306.805705.28500K562ATP5C1
GNPDA1ENSG00000113552.111236.09130663.413400.8977016.3743013.61350K562CCDC124
GNPDA1ENSG00000113552.11782.345101092.17160-0.481303.189901.62410K562CKAP4
GNPDA1ENSG00000113552.11889.07540651.309200.448903.502101.84850K562DDX19B
GNPDA1ENSG00000113552.11865.99900621.590600.478305.251603.99170K562DKC1
GNPDA1ENSG00000113552.11555.69670769.32770-0.469302.523101.30950K562EEF2
GNPDA1ENSG00000113552.11590.994801065.42420-0.8502016.2381014.70940K562EIF2S2
GNPDA1ENSG00000113552.11215.89210370.56170-0.779403.574902.41630K562EIF3A
GNPDA1ENSG00000113552.11507.84130733.66880-0.530805.043803.98360K562EIF3G
GNPDA1ENSG00000113552.11456.94200745.37560-0.706007.023005.61250K562FIP1L1
GNPDA1ENSG00000113552.111150.58160728.745000.6588010.844009.73130K562FXR1
GNPDA1ENSG00000113552.11535.43420745.24550-0.477003.137501.60800K562GEMIN5
GNPDA1ENSG00000113552.11284.92910618.49460-1.1182014.4061013.13020K562HNRNPC
GNPDA1ENSG00000113552.111223.55340900.510500.442203.399602.01380K562HNRNPK
GNPDA1ENSG00000113552.11861.913101095.85920-0.346403.362302.38000K562HNRNPU
GNPDA1ENSG00000113552.11971.31570613.018400.663907.572306.04160K562KIF1C
GNPDA1ENSG00000113552.11798.52740586.798300.444403.310302.10240K562MAK16
GNPDA1ENSG00000113552.11476.01160945.68800-0.9904016.5748014.24950K562MATR3
GNPDA1ENSG00000113552.111022.28020686.733500.573906.030804.58960K562MBNL1
GNPDA1ENSG00000113552.11623.91950763.69960-0.291602.362801.61470K562MTPAP
GNPDA1ENSG00000113552.11839.31470481.349300.802004.685703.44090K562NAA15
GNPDA1ENSG00000113552.11770.86520452.521400.768403.418902.28500K562PABPN1
GNPDA1ENSG00000113552.11520.38570786.81820-0.596404.620003.54630K562PCBP3
GNPDA1ENSG00000113552.11409.11800603.51400-0.560904.787703.73250K562POLR2G
GNPDA1ENSG00000113552.11932.88130723.355300.366902.446101.73970K562PRPF8
GNPDA1ENSG00000113552.11409.52420554.55970-0.437402.594601.72530K562PSIP1
GNPDA1ENSG00000113552.112158.205301610.027700.422604.730103.66660K562PUF60
GNPDA1ENSG00000113552.111363.64310572.873701.2511022.9444021.39710K562PUS1
GNPDA1ENSG00000113552.11623.45200860.58900-0.465003.442701.84060K562RBM34
GNPDA1ENSG00000113552.11558.78550928.96000-0.733307.972906.04950K562NELFE
GNPDA1ENSG00000113552.11510.91940736.84210-0.528303.285802.39380K562RPS19
GNPDA1ENSG00000113552.11410.52720619.00640-0.592503.317101.58910K562SERBP1
GNPDA1ENSG00000113552.11761.65720413.846200.879903.643202.19970K562SF1
GNPDA1ENSG00000113552.111023.83720837.282800.290102.579501.79110K562SF3A3
GNPDA1ENSG00000113552.11946.88880729.516200.376203.379702.43320K562SF3B4
GNPDA1ENSG00000113552.11928.82240605.343600.617503.959102.97400K562SYNCRIP
GNPDA1ENSG00000113552.11689.65960881.15750-0.353502.675901.87300K562TIA1
GNPDA1ENSG00000113552.11917.60520702.363100.385603.405702.51670K562U2AF2
GNPDA1ENSG00000113552.111212.88610899.740400.430805.879404.87610K562UPF1
GNPDA1ENSG00000113552.11786.776001050.37730-0.416903.880801.88280K562UPF2
GNPDA1ENSG00000113552.111028.91480580.805900.824904.494502.69980K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.





17 RBPs can affect the splicing of GNPDA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.265000.000000.00000excludedK562SF3B4
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.057000.000090.00248excludedHepG2U2AF1
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.125000.000010.00045excludedK562AKAP8L
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.088000.000020.00150excludedK562AKAP8L
SEGNPDA1ENSG00000113552.11chr5-1413918521413919041413914761413916061413925591413925950.170000.000680.01952includedHepG2HNRNPK
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.061000.000070.01123excludedHepG2DDX59
SEGNPDA1ENSG00000113552.11chr5-1413918521413919041413914761413916061413922331413925610.542000.001830.08928includedHepG2AKAP1
SEGNPDA1ENSG00000113552.11chr5-1413918521413919041413915671413916061413925591413925950.107000.007710.06610includedK562AQR
SEGNPDA1ENSG00000113552.11chr5-1413873631413874651413857081413858911413914761413916060.071000.001640.05809includedK562FXR1
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.133000.000000.00002excludedK562PUS1
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.194000.000000.00001excludedK562U2AF1
SEGNPDA1ENSG00000113552.11chr5-1413918521413919041413914761413916061413925591413925950.181000.000730.06050includedHepG2DDX6
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.054000.002820.06812excludedHepG2SF3A3
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.150000.000010.00102excludedHepG2PCBP1
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385600141385891141391476141391606-0.146000.000000.00021excludedK562UTP18
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.169000.000000.00015excludedK562U2AF2
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385600141385891141391476141391606-0.161000.000000.00026excludedK562RBM15
SEGNPDA1ENSG00000113552.11chr5-141391852141391942141391476141391606141392559141392592-0.100000.001210.03148excludedK562RBM15
SEGNPDA1ENSG00000113552.11chr5-141387363141387465141385708141385891141391476141391606-0.131000.000000.00028excludedK562AGGF1
SEGNPDA1ENSG00000113552.11chr5-1413918521413919041413914761413916061413925591413925950.263000.000300.06781includedHepG2EIF3D
SEGNPDA1ENSG00000113552.11chr5-1413918521413919421413914761413916061413925591413925920.142000.000360.02121includedK562HNRNPK
A3SSGNPDA1ENSG00000113552.11chr5-1413915671413917571413915671413916061413925591413925920.052000.007340.04048longerK562AQR
A3SSGNPDA1ENSG00000113552.11chr5-1413826521413828761413826521413828271413844961413846810.142000.000000.00000longerK562AQR
A3SSGNPDA1ENSG00000113552.11chr5-1413873631413875091413873631413874651413914761413916060.106000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GNPDA1 is not avaliable on ENCORE database.