CSRP1

General Information

Gene Name       : CSRP1
Gene ID             : ENSG00000159176.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CSRP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSRP1ENSG00000159176.1337.5560.0748.81ENCSR000AEF
HepG2CSRP1ENSG00000159176.1358.1832.8545.52ENCSR985KAT
K562CSRP1ENSG00000159176.1325.0326.5325.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CSRP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CSRP1 RNA is bound by 7 proteins.  







eCLIP assay for CSRP1 is not avaliable on ENCORE database.





7 proteins are bound to CSRP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1201453647201453695-3'-UTR,intron-Distal4.295617.50817K562UPF1
chr1201452989201453070-3'-UTR,intron-Distal,intron-Proximal4.641405.17229HepG2UPF1
chr1201453325201453366-3'-UTR,intron-Distal,intron-Proximal4.462074.46951K562FAM120A
chr1201452830201452905-3'-UTR,intron-Distal3.2380210.23650K562UPF1
chr1201453194201453266-3'-UTR,intron-Distal5.7355112.02344K562UPF1
chr1201452801201452883-3'-UTR,intron-Distal4.422475.00478HepG2PCBP2
chr1201453549201453608-3'-UTR,intron-Distal4.030925.99105K562UPF1
chr1201453561201453625-3'-UTR,intron-Distal3.585195.15600K562LIN28B
chr1201453008201453074-3'-UTR,intron-Distal,intron-Proximal5.0169113.35513K562UPF1
chr1201453659201453791-3'-UTR,intron-Distal,intron-Proximal4.1340510.12999K562PABPC4
chr1201452727201452830-3'-UTR,intron-Distal4.0058411.75503K562UPF1
chr1201452992201453075-3'-UTR,intron-Distal,intron-Proximal3.843937.69244K562FAM120A
chr1201452817201452914-3'-UTR,intron-Distal3.325273.05408HepG2UPF1
chr1201453001201453064-3'-UTR,intron-Distal,intron-Proximal3.103293.34573K562IGF2BP2
chr1201452744201452792-3'-UTR,intron-Distal3.896594.66555K562FAM120A
chr1201452883201452904-3'-UTR,intron-Distal5.372005.77028HepG2PCBP2
chr1201452904201452992-3'-UTR,intron-Distal,intron-Proximal4.175636.58258HepG2PCBP2
chr1201453306201453458-3'-UTR,intron-Distal,intron-Proximal6.5311023.02344K562UPF1
chr1201465237201465355-5'-UTR,CDS,intron-Distal,intron-Proximal4.052196.81564HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CSRP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CSRP1 is not available on ENCORE database.

  • 119 RBPs can affect the levels of CSRP1.  








The Knockdown/knockout RNA-Seq assay for CSRP1 is not available on ENCORE database.





119 RBPs can affect the gene expression of CSRP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CSRP1ENSG00000159176.91085.66810623.306600.8005017.4497016.20090HepG2ACO1
CSRP1ENSG00000159176.91608.61840818.561900.9746011.8964010.86890HepG2AKAP1
CSRP1ENSG00000159176.9713.87280459.451300.635704.770903.41940HepG2AKAP8
CSRP1ENSG00000159176.91225.96780677.305200.8559010.483809.02750HepG2ASCC1
CSRP1ENSG00000159176.91305.48400865.898100.5922010.596009.39800HepG2AUH
CSRP1ENSG00000159176.9464.26310682.12960-0.555104.433403.69650HepG2BOP1
CSRP1ENSG00000159176.9808.28240590.009900.454003.311301.97090HepG2BUD13
CSRP1ENSG00000159176.91385.37900643.482001.1062017.6580015.91680HepG2CIRBP
CSRP1ENSG00000159176.91035.70190623.153600.7328015.2790013.97880HepG2CKAP4
CSRP1ENSG00000159176.9380.68930626.23400-0.718105.973304.99710HepG2CPSF6
CSRP1ENSG00000159176.91969.84760936.645301.0724035.7583033.98200HepG2CELF1
CSRP1ENSG00000159176.9656.386701006.97970-0.6174010.432609.13600HepG2DAZAP1
CSRP1ENSG00000159176.9946.73940576.461200.7156014.2964012.72200HepG2DDX19B
CSRP1ENSG00000159176.9738.39330563.211400.390603.291102.03250HepG2DDX1
CSRP1ENSG00000159176.9809.09860619.856200.384302.697802.02730HepG2DDX21
CSRP1ENSG00000159176.91982.68570784.150301.3382025.6512023.94140HepG2DDX3X
CSRP1ENSG00000159176.91444.50930642.950101.1677015.1190013.50410HepG2DDX55
CSRP1ENSG00000159176.91052.49160673.530700.643905.357704.52420HepG2DDX6
CSRP1ENSG00000159176.9805.88150596.331000.434404.460203.63740HepG2DKC1
CSRP1ENSG00000159176.9700.08610552.278900.342002.669201.97500HepG2DNAJC21
CSRP1ENSG00000159176.9860.29220530.649400.697006.234704.90380HepG2EEF2
CSRP1ENSG00000159176.9629.46630442.308000.509002.945901.80400HepG2EFTUD2
CSRP1ENSG00000159176.9417.17310585.38270-0.488703.876102.62390HepG2EIF3G
CSRP1ENSG00000159176.9417.85770715.65450-0.776306.484405.50530HepG2EIF4A3
CSRP1ENSG00000159176.91384.14190696.725300.990209.929308.66650HepG2EIF4B
CSRP1ENSG00000159176.9581.41620951.75550-0.711007.460706.15160HepG2EIF4G2
CSRP1ENSG00000159176.91647.62440609.066401.4356011.239509.58260HepG2EWSR1
CSRP1ENSG00000159176.9509.60250385.044900.404202.643001.50300HepG2FAM120A
CSRP1ENSG00000159176.9429.33790590.72340-0.460403.291102.05690HepG2FASTKD2
CSRP1ENSG00000159176.91740.79920795.358001.1300016.0828014.48690HepG2FIP1L1
CSRP1ENSG00000159176.91025.20940669.780300.614105.268504.36340HepG2G3BP1
CSRP1ENSG00000159176.9466.09740710.98710-0.609204.715003.53900HepG2G3BP2
CSRP1ENSG00000159176.9981.48420613.281800.678306.227204.67610HepG2GNB2L1
CSRP1ENSG00000159176.92113.45490709.890201.5738033.2597031.32920HepG2GPKOW
CSRP1ENSG00000159176.9355.48680503.94070-0.503502.337901.31330HepG2GRSF1
CSRP1ENSG00000159176.9900.38800616.597600.546103.034101.37910HepG2GTF2F1
CSRP1ENSG00000159176.91006.24380557.568900.8517011.1953010.03220HepG2HNRNPA1
CSRP1ENSG00000159176.9525.36730678.08720-0.368102.116601.50000HepG2HNRNPK
CSRP1ENSG00000159176.91330.18440677.460800.9733014.0668012.79640HepG2HNRNPLL
CSRP1ENSG00000159176.9890.86740548.645000.699207.981206.49520HepG2HNRNPM
CSRP1ENSG00000159176.9939.28320616.066000.608409.436708.36790HepG2HNRNPU
CSRP1ENSG00000159176.9948.76020500.340100.923004.890903.27460HepG2HSPD1
CSRP1ENSG00000159176.91268.435601062.629400.255302.301601.63940HepG2IGF2BP1
CSRP1ENSG00000159176.91556.52340680.836201.1928020.6635019.01580HepG2IGF2BP2
CSRP1ENSG00000159176.9889.41080629.295800.499007.432706.29220HepG2ILF2
CSRP1ENSG00000159176.9456.41870684.76900-0.585303.389402.26340HepG2KHSRP
CSRP1ENSG00000159176.9819.30450600.944300.447103.132201.92410HepG2LARP7
CSRP1ENSG00000159176.9565.14000722.21440-0.353801.863101.32000HepG2MAGOH
CSRP1ENSG00000159176.91691.71440726.273201.2198018.8288017.29930HepG2MATR3
CSRP1ENSG00000159176.9848.59390450.767000.912606.425004.87480HepG2METAP2
CSRP1ENSG00000159176.9909.05250643.523600.498304.263803.27090HepG2MSI2
CSRP1ENSG00000159176.91546.19150743.394601.0564015.3508013.94280HepG2NCBP2
CSRP1ENSG00000159176.9453.80120600.69480-0.404602.264901.58660HepG2NSUN2
CSRP1ENSG00000159176.9576.73150421.889000.450903.124601.41730HepG2NUP35
CSRP1ENSG00000159176.9908.12490497.563700.867905.652804.35140HepG2PABPC1
CSRP1ENSG00000159176.9928.20780662.103700.487303.540602.72910HepG2PABPC4
CSRP1ENSG00000159176.9834.69630609.835200.452705.014503.91900HepG2PARN
CSRP1ENSG00000159176.91242.18760707.877000.811209.473808.45950HepG2PCBP1
CSRP1ENSG00000159176.9186.57880488.19070-1.3877011.447008.64420HepG2PNPT1
CSRP1ENSG00000159176.9393.14840546.00330-0.473804.184703.25500HepG2PRPF4
CSRP1ENSG00000159176.91086.57740495.835101.1318014.9904013.32570HepG2PRPF8
CSRP1ENSG00000159176.91304.49990720.254700.8568019.2215018.02400HepG2PTBP1
CSRP1ENSG00000159176.92896.45460953.221001.6033033.5204031.73330HepG2PUF60
CSRP1ENSG00000159176.91721.442201011.932900.7664019.5710018.28330HepG2PUM1
CSRP1ENSG00000159176.91269.68920634.875600.9998028.2767026.68940HepG2PUS1
CSRP1ENSG00000159176.9600.78680780.13160-0.376903.155802.49570HepG2QKI
CSRP1ENSG00000159176.91479.25730597.197401.3085012.4368011.03050HepG2RAVER1
CSRP1ENSG00000159176.91987.49210830.946901.2580042.8948041.32460HepG2RBM22
CSRP1ENSG00000159176.9556.51850707.99010-0.347302.422101.78780HepG2RBM25
CSRP1ENSG00000159176.91128.22480801.604700.493006.286105.52590HepG2NELFE
CSRP1ENSG00000159176.9595.55230746.53070-0.326002.774602.15720HepG2RECQL
CSRP1ENSG00000159176.9681.51140419.159100.701106.974806.04960HepG2RPS19
CSRP1ENSG00000159176.9345.13750548.65070-0.668706.208505.30300HepG2SAFB2
CSRP1ENSG00000159176.9260.72790514.74450-0.981308.021805.87940HepG2SART3
CSRP1ENSG00000159176.91075.26340420.625701.3540023.2088020.72970HepG2SERBP1
CSRP1ENSG00000159176.9949.75460614.655800.627704.610703.72790HepG2SF3A3
CSRP1ENSG00000159176.91052.92130749.943700.489406.130405.30880HepG2SF3B4
CSRP1ENSG00000159176.91275.42380639.847500.9951030.6857028.91980HepG2SMN1
CSRP1ENSG00000159176.9922.69740609.845700.597304.046102.86960HepG2SMNDC1
CSRP1ENSG00000159176.91712.27960782.752101.1292037.4406036.14110HepG2SRSF1
CSRP1ENSG00000159176.9489.45350636.78750-0.379603.480302.87700HepG2SRSF9
CSRP1ENSG00000159176.91480.87350814.849700.8617023.1650021.99880HepG2SSB
CSRP1ENSG00000159176.9718.62720475.497400.595703.967002.62590HepG2STIP1
CSRP1ENSG00000159176.9871.403401070.38180-0.296702.276401.70200HepG2SUCLG1
CSRP1ENSG00000159176.92186.51630640.003701.7724037.5532035.62280HepG2SUPV3L1
CSRP1ENSG00000159176.9440.40080703.49380-0.675708.354207.46450HepG2TAF15
CSRP1ENSG00000159176.91337.91370489.572301.4503011.121809.16010HepG2TBRG4
CSRP1ENSG00000159176.9603.11440428.945700.491502.484801.53420HepG2TFIP11
CSRP1ENSG00000159176.91325.95100598.729201.1470026.7989025.53900HepG2TIAL1
CSRP1ENSG00000159176.91165.81860603.967600.9487023.5130022.06790HepG2TRIM56
CSRP1ENSG00000159176.91148.73780931.332800.302602.489501.66430HepG2TUFM
CSRP1ENSG00000159176.9981.66560680.270500.529004.010903.26040HepG2U2AF1
CSRP1ENSG00000159176.91352.32020481.868701.488606.132004.59960HepG2U2AF2
CSRP1ENSG00000159176.9911.96040545.103900.7423013.4623012.14030HepG2UPF1
CSRP1ENSG00000159176.9806.99940538.848200.582608.322007.26260HepG2ZC3H8
CSRP1ENSG00000159176.9339.15180596.96010-0.815705.969303.97440HepG2ZRANB2
CSRP1ENSG00000159176.9985.57480719.904500.453103.543502.14320K562ABCF1
CSRP1ENSG00000159176.9924.30970748.090200.305102.638802.08120K562AGGF1
CSRP1ENSG00000159176.91047.41950821.997100.349502.546301.61020K562AKAP8
CSRP1ENSG00000159176.9987.98390816.722200.274502.104001.31530K562ATP5C1
CSRP1ENSG00000159176.9716.09720529.086500.436604.531203.28530K562BCLAF1
CSRP1ENSG00000159176.9676.18360480.769300.492003.964003.02650K562CPSF6
CSRP1ENSG00000159176.9527.63870401.390700.394402.700701.65500K562CSTF2
CSRP1ENSG00000159176.91353.448601059.566000.353102.991301.97730K562CELF1
CSRP1ENSG00000159176.9678.25990528.421300.360002.781901.46940K562DDX6
CSRP1ENSG00000159176.9779.13490463.468800.749307.241305.70550K562EFTUD2
CSRP1ENSG00000159176.91132.45930616.525600.8771017.5378015.95370K562EIF2S2
CSRP1ENSG00000159176.9330.35720544.50850-0.720906.735105.46660K562EIF4A3
CSRP1ENSG00000159176.91139.65690861.619000.403404.279203.11870K562EIF4G2
CSRP1ENSG00000159176.9690.38940525.638800.393202.909701.60580K562EXOSC5
CSRP1ENSG00000159176.9790.03610517.484900.610305.698804.45540K562FIP1L1
CSRP1ENSG00000159176.9849.39760489.228100.795808.584207.03740K562FMR1
CSRP1ENSG00000159176.9252.03440370.43790-0.555604.058902.39700K562FUS
CSRP1ENSG00000159176.9199.09020394.74060-0.987506.973905.73840K562G3BP2
CSRP1ENSG00000159176.9642.30260512.514500.325602.360101.31510K562GLRX3
CSRP1ENSG00000159176.9776.50360458.992900.758408.272206.89340K562GPKOW
CSRP1ENSG00000159176.91296.33140821.526200.658008.049506.74860K562GRSF1
CSRP1ENSG00000159176.9804.49380513.890900.646503.654501.83080K562HNRNPAB
CSRP1ENSG00000159176.9693.07090453.716500.611105.492904.68010K562HNRNPC
CSRP1ENSG00000159176.9592.21910405.261200.547204.227702.78150K562HNRNPF
CSRP1ENSG00000159176.9621.09520425.634800.545103.534602.46930K562HNRNPM
CSRP1ENSG00000159176.9968.85160701.605100.465503.739602.81980K562HSPD1
CSRP1ENSG00000159176.9614.48420439.639500.483003.513501.90120K562LARP7
CSRP1ENSG00000159176.9449.73830611.40260-0.443003.250902.33190K562MAGOH
CSRP1ENSG00000159176.91176.28330925.463300.345902.579401.70670K562MBNL1
CSRP1ENSG00000159176.9709.90930448.038200.663906.548105.17540K562METAP2
CSRP1ENSG00000159176.91265.74510918.377200.462703.928702.58630K562MSI2
CSRP1ENSG00000159176.9708.22950538.847200.394203.754402.82440K562MTPAP
CSRP1ENSG00000159176.9868.91680598.679500.537308.102406.92070K562NSUN2
CSRP1ENSG00000159176.9783.47660468.563100.741503.211202.12270K562PABPN1
CSRP1ENSG00000159176.9666.62720512.843800.378302.747101.94870K562POLR2G
CSRP1ENSG00000159176.9684.70630451.011400.602204.451203.50040K562PRPF8
CSRP1ENSG00000159176.9547.43820406.829900.428202.472401.62360K562PSIP1
CSRP1ENSG00000159176.91375.38610940.072900.548904.999503.90510K562PUF60
CSRP1ENSG00000159176.91397.49300772.042900.856005.663004.91940K562PUS1
CSRP1ENSG00000159176.9945.15770752.179700.329402.679802.09500K562RBM15
CSRP1ENSG00000159176.9631.78530459.321000.459802.575901.78880K562RPS19
CSRP1ENSG00000159176.9756.43940500.148300.596803.068801.45710K562SBDS
CSRP1ENSG00000159176.9646.11190436.604000.565403.312102.24590K562SF3B1
CSRP1ENSG00000159176.9776.59410605.276400.359503.565802.51930K562SRPK2
CSRP1ENSG00000159176.9819.13680582.358300.492104.453503.55990K562SRSF1
CSRP1ENSG00000159176.9591.69570415.829600.508803.149202.12640K562TRIM56
CSRP1ENSG00000159176.91001.67720823.800700.282002.527801.32090K562TROVE2
CSRP1ENSG00000159176.9907.59540634.794800.515706.892505.81590K562UPF1
CSRP1ENSG00000159176.91033.76420753.656400.455804.098903.01440K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CSRP1 is not available on ENCORE database.





5 RBPs can affect the splicing of CSRP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RICSRP1ENSG00000159176.9chr1-201454410201458112201454410201454504201457982201458112-0.057000.002000.09580excludedK562NONO
RICSRP1ENSG00000159176.9chr1-2014544102014581122014544102014545042014579822014581120.079000.002810.02766includedHepG2TAF15
RICSRP1ENSG00000159176.9chr1-2014544102014581122014544102014545042014579822014581120.080000.001630.08470includedK562KHSRP
RICSRP1ENSG00000159176.9chr1-2014544102014581122014544102014545042014579822014581120.182000.003180.04180includedK562U2AF2
RICSRP1ENSG00000159176.9chr1-2014544102014581122014544102014545042014579822014581120.059000.007700.04991includedHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CSRP1 is not avaliable on ENCORE database.