CNP

General Information

Gene Name       : CNP
Gene ID             : ENSG00000173786.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNPENSG00000173786.1610.6617.9214.29ENCSR000AEF
HepG2CNPENSG00000173786.16141.6568.49105.07ENCSR985KAT
K562CNPENSG00000173786.1627.1222.3124.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNP is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNP RNA is bound by 21 proteins.  







eCLIP assay for CNP is not avaliable on ENCORE database.





21 proteins are bound to CNP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174012631940126390+3'-UTR4.3866615.07484HepG2GRSF1
chr174012616640126236+3'-UTR6.8351661.75237HepG2UPF1
chr174012680840126848+3'-UTR5.210889.45100HepG2AKAP1
chr174012709340127172+3'-UTR5.2600510.06469K562YBX3
chr174012700940127101+3'-UTR4.2897217.09373K562UPF1
chr174012382140123951+3'-UTR,CDS,intron-Proximal4.784595.26064K562AQR
chr174012617740126203+3'-UTR3.221664.22050HepG2LARP4
chr174012683740126922+3'-UTR3.109516.13998HepG2G3BP1
chr174012680140126867+3'-UTR5.3464531.74542HepG2UPF1
chr174012614440126212+3'-UTR4.3929414.26407K562UPF1
chr174012657240126662+3'-UTR4.8901918.99141K562UPF1
chr174012604440126071+3'-UTR3.445396.34803HepG2LARP4
chr174012666240126770+3'-UTR6.8133527.54167K562UPF1
chr174012612440126186+3'-UTR4.411624.51303K562IGF2BP2
chr174012677040126835+3'-UTR6.1031114.85952K562UPF1
chr174012612940126168+3'-UTR5.0849119.83932HepG2AKAP1
chr174012673940126801+3'-UTR6.1673258.83657HepG2UPF1
chr174012639040126445+3'-UTR4.5833312.65934HepG2GRSF1
chr174012608740126144+3'-UTR3.318838.28053K562UPF1
chr174012607540126172+3'-UTR4.0075140.92191HepG2PCBP2
chr174012385840123930+3'-UTR,CDS,intron-Proximal5.2709610.05439HepG2SF3B4
chr174012669040126782+3'-UTR4.6714722.78539HepG2AKAP1
chr174012687040126928+3'-UTR5.0622325.69301HepG2UPF1
chr174012661740126687+3'-UTR3.292305.19341K562FAM120A
chr174012607640126138+3'-UTR3.250186.21391K562PUM2
chr174012390840124039+3'-UTR,CDS,intron-Proximal3.468146.79075HepG2RPS3
chr174012013040120198+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.520924.91258K562YBX3
chr174012687940126931+3'-UTR3.727579.21085HepG2AKAP1
chr174012570740125820+3'-UTR,CDS4.3151320.55950HepG2RPS3
chr174012646340126495+3'-UTR4.163528.23922HepG2AKAP1
chr174012608540126166+3'-UTR6.9453572.37088HepG2UPF1
chr174012662140126739+3'-UTR5.3576853.03998HepG2UPF1
chr174012607540126129+3'-UTR4.0851315.42121HepG2AKAP1
chr174012712140127153+3'-UTR3.949096.62084HepG2AKAP1
chr174012646440126514+3'-UTR3.505624.21971K562TIA1
chr174012710140127157+3'-UTR5.6638911.97438K562UPF1
chr174012382840123945+3'-UTR,CDS,intron-Proximal4.9542626.36737HepG2AQR
chr174012658040126684+3'-UTR4.4331020.53043HepG2AKAP1
chr174012391040123955+3'-UTR,CDS3.4837315.88193HepG2BUD13
chr174012613140126210+3'-UTR3.391843.83396HepG2IGF2BP3
chr174012623640126317+3'-UTR5.3413241.90450HepG2UPF1
chr174012636940126412+3'-UTR4.443308.27548K562UPF1
chr174012616840126230+3'-UTR4.4960820.18903HepG2AKAP1
chr174012645640126500+3'-UTR4.0309211.60337K562UPF1
chr174012557740125707+3'-UTR,CDS4.1241914.66573HepG2RPS3
chr174012700440127070+3'-UTR5.4331021.71525HepG2AKAP1
chr174012625240126339+3'-UTR4.0159213.82382K562UPF1
chr174012701140127067+3'-UTR6.0183136.69476HepG2UPF1
chr174012645940126508+3'-UTR4.169553.03253HepG2TIA1
chr174012671840126809+3'-UTR3.430195.50838HepG2IGF2BP3
chr174012665340126750+3'-UTR3.734408.77191HepG2G3BP1
chr174012624340126303+3'-UTR5.1265217.17848HepG2AKAP1
chr174011881340118882+5'-UTR3.443327.84424HepG2RPS3
chr174011880140118906+5'-UTR,CDS,intron-Proximal3.187564.24836K562DDX3X
chr174011880640118905+5'-UTR,CDS4.6935657.21270HepG2DDX3X
chr174012043940120571+CDS,intron-Distal3.447514.50748HepG2GRWD1
chr174012059040120762+CDS,intron-Distal,intron-Proximal3.429347.62993HepG2GRWD1
chr174012404640124120+CDS,intron-Proximal3.512369.57146HepG2PRPF8
chr174012395540123989+CDS3.062336.16215HepG2BUD13
chr174012065040120750+CDS,intron-Distal3.284278.39804HepG2RPS3
chr174012046940120622+CDS,intron-Distal4.967377.43637K562FMR1
chr174012046840120569+CDS,intron-Distal3.048726.83938HepG2RPS3
chr174012399840124046+CDS3.665908.03852HepG2G3BP1
chr174012017940120277+CDS,intron-Distal,intron-Proximal4.513068.43072HepG2DDX3X
chr174012458440124660+intron-Distal4.234284.07750HepG2HNRNPK
chr174012382240123910+intron-Proximal4.0512326.83800HepG2BUD13
chr174012404940124097+intron-Proximal4.756274.97857HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNP is not available on ENCORE database.

  • 111 RBPs can affect the levels of CNP.  








The Knockdown/knockout RNA-Seq assay for CNP is not available on ENCORE database.





111 RBPs can affect the gene expression of CNP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNPENSG00000173786.121660.950202297.65440-0.468205.392403.93770HepG2AATF
CNPENSG00000173786.122495.969103083.85660-0.305105.567204.76430HepG2ACO1
CNPENSG00000173786.122108.459305101.55850-1.2747029.5670027.74500HepG2AUH
CNPENSG00000173786.121725.794903043.12050-0.818306.065005.21840HepG2BOP1
CNPENSG00000173786.121337.430302713.96580-1.0209027.5885025.66560HepG2CALR
CNPENSG00000173786.122534.225904221.34140-0.736207.661706.02390HepG2CCAR1
CNPENSG00000173786.122662.530303083.11550-0.211603.278102.56460HepG2CKAP4
CNPENSG00000173786.12791.981001366.89070-0.787405.614704.52140HepG2CNOT7
CNPENSG00000173786.12811.093102793.62690-1.7842017.1689015.63090HepG2CPSF6
CNPENSG00000173786.124146.671602825.052500.553609.164907.28020HepG2CPSF7
CNPENSG00000173786.122777.278302353.504200.238802.643701.65030HepG2YBX3
CNPENSG00000173786.124971.792803844.796800.370807.239606.29240HepG2CELF1
CNPENSG00000173786.122906.355404133.83720-0.5083017.1419015.57850HepG2DAZAP1
CNPENSG00000173786.123479.503802852.092900.286805.455704.33730HepG2DDX19B
CNPENSG00000173786.121675.847402480.75220-0.565908.965407.34920HepG2DDX24
CNPENSG00000173786.121211.374903172.40940-1.388909.519507.78150HepG2DDX59
CNPENSG00000173786.121835.559302733.62380-0.574607.092305.53800HepG2DDX5
CNPENSG00000173786.123808.575902584.497400.559303.810803.09520HepG2DDX6
CNPENSG00000173786.121562.511102228.92290-0.512506.311504.87420HepG2DHX30
CNPENSG00000173786.121148.656002310.96330-1.0085031.9457029.85470HepG2DNAJC21
CNPENSG00000173786.123214.918602290.558800.4890015.0062013.60970HepG2DNAJC2
CNPENSG00000173786.122978.060102406.904800.307102.242101.41060HepG2EEF2
CNPENSG00000173786.121562.855202334.44680-0.578904.881803.40750HepG2AGO1
CNPENSG00000173786.121621.113602483.82330-0.615606.894005.98660HepG2EIF2S1
CNPENSG00000173786.123986.718302602.221300.6154011.627109.45900HepG2EIF2S2
CNPENSG00000173786.122236.247102744.56990-0.295501.862701.33420HepG2EIF4A3
CNPENSG00000173786.124704.139702672.885800.815408.534607.36010HepG2EIF4B
CNPENSG00000173786.122003.916304078.51100-1.0252046.7427044.21560HepG2EIF4G1
CNPENSG00000173786.121462.802303906.91180-1.4173039.7553037.17250HepG2EIF4G2
CNPENSG00000173786.124879.734705857.71270-0.263502.282501.72760HepG2ETF1
CNPENSG00000173786.121557.661002415.94790-0.6332010.031108.09660HepG2FASTKD2
CNPENSG00000173786.121261.881001789.47290-0.504006.054104.91170HepG2FUBP3
CNPENSG00000173786.125746.609702770.205201.0526021.0920019.36380HepG2FXR1
CNPENSG00000173786.123860.720202728.277200.500805.386004.13020HepG2G3BP2
CNPENSG00000173786.122463.923402944.15720-0.256903.601902.49850HepG2HDGF
CNPENSG00000173786.125019.677302333.103001.1052013.8812012.60990HepG2HNRNPA1
CNPENSG00000173786.121547.592302595.14640-0.7458012.5120011.13080HepG2HNRNPC
CNPENSG00000173786.122480.941203219.33580-0.375906.642505.59630HepG2HNRNPF
CNPENSG00000173786.123338.277402602.856200.358903.269802.51220HepG2HNRNPK
CNPENSG00000173786.124243.155303765.529400.172202.907302.21890HepG2HNRNPL
CNPENSG00000173786.121851.660103021.83740-0.706604.822404.01510HepG2HNRNPLL
CNPENSG00000173786.121487.485502577.98880-0.7934026.2067024.49720HepG2HNRNPU
CNPENSG00000173786.122307.091603170.14640-0.458506.430005.36900HepG2IGF2BP1
CNPENSG00000173786.121684.639402611.35930-0.632407.443106.39230HepG2IGF2BP2
CNPENSG00000173786.12922.010401332.59900-0.531403.288601.83120HepG2ILF3
CNPENSG00000173786.124821.118802786.516400.7908010.488609.31990HepG2MATR3
CNPENSG00000173786.122065.915202803.50660-0.440505.226804.14160HepG2MSI2
CNPENSG00000173786.121887.539802354.03180-0.318602.663301.47130HepG2NAA15
CNPENSG00000173786.123982.821502852.015700.481704.563803.76080HepG2NCBP2
CNPENSG00000173786.123390.223904099.11850-0.273903.146002.33440HepG2NOL12
CNPENSG00000173786.123102.16910995.067201.640305.844603.03820HepG2NUFIP2
CNPENSG00000173786.122532.242301460.151200.794205.873703.63210HepG2PA2G4
CNPENSG00000173786.12883.127401249.39560-0.500502.387301.57460HepG2PABPC1
CNPENSG00000173786.121999.345302539.26850-0.344902.063601.43210HepG2PABPC4
CNPENSG00000173786.125154.842402537.778201.0223052.7353050.72060HepG2PCBP1
CNPENSG00000173786.122102.624701615.647500.380004.412202.85710HepG2PKM
CNPENSG00000173786.123476.245602299.359900.5962013.9054012.32340HepG2PPIL4
CNPENSG00000173786.121389.964403295.06860-1.2453061.3365058.74000HepG2PRPF4
CNPENSG00000173786.123756.941102582.367200.5408014.6986013.63110HepG2PTBP1
CNPENSG00000173786.122191.459103913.04030-0.8364018.1411016.79440HepG2PUF60
CNPENSG00000173786.125420.926304153.950300.3840012.8720011.79040HepG2PUM1
CNPENSG00000173786.122056.771404150.86310-1.0130032.0624029.96020HepG2PUM2
CNPENSG00000173786.121641.281302796.59070-0.7688018.4763017.06320HepG2QKI
CNPENSG00000173786.12686.562502588.23400-1.9145016.7013015.11180HepG2RAVER1
CNPENSG00000173786.121611.669401123.291700.520704.293502.09860HepG2RBM14
CNPENSG00000173786.122751.951103648.35980-0.406803.032702.13730HepG2RBM15
CNPENSG00000173786.122998.531304895.87190-0.7073013.1277012.16640HepG2RBM22
CNPENSG00000173786.123809.768102516.082900.598406.063704.49290HepG2RCC2
CNPENSG00000173786.123349.706502873.857800.220902.926302.37210HepG2NELFE
CNPENSG00000173786.124447.721102676.733000.7325027.5397025.95300HepG2RECQL
CNPENSG00000173786.121733.040903467.71940-1.0007022.0515020.50030HepG2RPLP0
CNPENSG00000173786.123011.961901901.210200.663709.431908.37790HepG2RPS19
CNPENSG00000173786.121811.642501372.741100.400102.322401.58720HepG2RPS3A
CNPENSG00000173786.121592.104302310.10630-0.537002.494201.74450HepG2RRP9
CNPENSG00000173786.121736.635602818.03860-0.698403.739501.95690HepG2RTF1
CNPENSG00000173786.121656.399102295.81260-0.4710010.870409.72450HepG2SAFB2
CNPENSG00000173786.121430.867801907.77910-0.415003.536102.47000HepG2SERBP1
CNPENSG00000173786.123496.65230966.646101.854809.434206.76270HepG2SF1
CNPENSG00000173786.123871.511802688.428900.5260014.1869013.00840HepG2SF3B4
CNPENSG00000173786.123053.89850939.996901.699807.412404.85250HepG2SFPQ
CNPENSG00000173786.124111.081402677.304800.6186027.3665025.68780HepG2SMN1
CNPENSG00000173786.122122.42820865.983201.293203.082001.68000HepG2SNRNP200
CNPENSG00000173786.122355.087203327.88930-0.498803.089202.26270HepG2SNRNP70
CNPENSG00000173786.122111.191605529.54470-1.3891033.9704032.72580HepG2SRFBP1
CNPENSG00000173786.124486.286703863.659500.215503.236002.56800HepG2SRSF5
CNPENSG00000173786.122110.615703162.82320-0.583509.550208.39060HepG2SRSF7
CNPENSG00000173786.122814.808802283.044100.302005.193404.47930HepG2SRSF9
CNPENSG00000173786.122765.928304800.67020-0.7955016.2729015.24290HepG2SSB
CNPENSG00000173786.121268.617302313.72990-0.867009.591907.47990HepG2STAU1
CNPENSG00000173786.121458.147402150.89390-0.560804.400802.71330HepG2SUGP2
CNPENSG00000173786.121844.053202339.04310-0.343003.183302.18080HepG2SUPT6H
CNPENSG00000173786.121459.910803015.52360-1.046504.926504.06460HepG2SUPV3L1
CNPENSG00000173786.12970.747402522.48890-1.3777055.8600053.75320HepG2TAF15
CNPENSG00000173786.121632.256302317.64500-0.505807.328505.98000HepG2TIA1
CNPENSG00000173786.121629.004302504.99520-0.6208011.6959010.79410HepG2TIAL1
CNPENSG00000173786.122226.653502963.02720-0.412203.583202.87210HepG2U2AF1
CNPENSG00000173786.123225.328204046.69160-0.327302.234801.48660HepG2UBE2L3
CNPENSG00000173786.121470.209802352.05750-0.6779019.8991018.36060HepG2UPF1
CNPENSG00000173786.121808.370002270.81840-0.328505.103004.33130HepG2UTP3
CNPENSG00000173786.121752.786602546.70500-0.539003.017201.69550HepG2XRCC5
CNPENSG00000173786.122024.973303251.89320-0.6834024.9084023.25670HepG2ZC3H8
CNPENSG00000173786.121485.40580970.437600.6140011.8482010.76580K562AGGF1
CNPENSG00000173786.121410.244101066.340300.403203.650402.48470K562AKAP8
CNPENSG00000173786.12328.63850560.26550-0.769606.251504.43550K562FKBP4
CNPENSG00000173786.121038.90490743.081600.483406.058105.21450K562FXR1
CNPENSG00000173786.12157.98840344.86400-1.126208.039306.70850K562G3BP2
CNPENSG00000173786.12489.75570645.33360-0.398002.625902.04230K562HNRNPC
CNPENSG00000173786.12421.44640598.11530-0.505103.245801.89770K562HNRNPK
CNPENSG00000173786.121221.23890977.992300.320402.568501.55270K562HNRNPL
CNPENSG00000173786.12835.65430629.443700.408703.319802.39300K562MAGOH
CNPENSG00000173786.12878.36720628.132100.483704.674103.44280K562MATR3
CNPENSG00000173786.121205.01910835.166600.528806.219805.02300K562POLR2G
CNPENSG00000173786.121008.81540800.701900.333202.275501.53230K562PPIG
CNPENSG00000173786.12795.85090611.561000.379903.052302.35840K562PTBP1
CNPENSG00000173786.1298.24420329.02710-1.7438012.531209.52260K562RAVER1
CNPENSG00000173786.12817.67840586.289500.479803.995702.96860K562RBM22
CNPENSG00000173786.121064.70180744.213700.516605.223103.73280K562SAFB
CNPENSG00000173786.12743.96250550.624500.434103.160102.01810K562SRSF4
CNPENSG00000173786.12761.22400566.301900.426603.142502.01070K562SRSF5
CNPENSG00000173786.121034.88590837.720300.304802.397801.63400K562SYNCRIP
CNPENSG00000173786.12196.67390338.51910-0.783403.386701.70660K562TAF15
CNPENSG00000173786.12784.53310585.281800.422603.400202.47920K562TIA1
CNPENSG00000173786.12251.42220345.19070-0.457302.628401.84540K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNP is not available on ENCORE database.





7 RBPs can affect the splicing of CNP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNPENSG00000173786.12chr17+401200904012075840118832401189054012390940124049-0.059000.002080.03763excludedHepG2U2AF1
SECNPENSG00000173786.12chr17+401200854012075840118758401189054012390940124049-0.062000.003190.07531excludedK562AKAP8L
SECNPENSG00000173786.12chr17+401200854012075840118758401189054012390940124049-0.061000.000240.00828excludedHepG2HNRNPK
SECNPENSG00000173786.12chr17+401200904012075840118832401189054012390940124049-0.053000.000380.02416excludedHepG2PTBP1
SECNPENSG00000173786.12chr17+401200854012075840118758401189054012390940124049-0.054000.000040.00231excludedHepG2SF3A3
SECNPENSG00000173786.12chr17+401200904012075840118832401189054012390940124049-0.059000.000400.02239excludedHepG2SF3B4
SECNPENSG00000173786.12chr17+401200904012075840118832401189054012390940124049-0.113000.003200.09028excludedK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNP is not avaliable on ENCORE database.