CHFR

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHFR	ENSG00000072609.17	19.45	27.21	23.33	ENCSR000AEF
HepG2	CHFR	ENSG00000072609.17	13.58	14.39	13.98	ENCSR985KAT
K562	CHFR	ENSG00000072609.17	13.41	14.23	13.82	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHFR is not avaliable on ENCORE database.

Proteins bound to RNA

CHFR RNA is bound by 42 proteins.

eCLIP assay for CHFR is not avaliable on ENCORE database.

42 proteins are bound to CHFR RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	133398849	133398918	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.88623	3.93061	K562	U2AF2
chr12	133398787	133398876	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.74736	3.45225	K562	GRWD1
chr12	133417372	133417500	-	3'-UTR,intron-Distal,intron-Proximal	3.60656	3.72765	HepG2	UPF1
chr12	133463919	133464115	-	5'-UTR,intron-Distal,intron-Proximal	4.25516	4.55101	HepG2	PRPF4
chr12	133463919	133464008	-	5'-UTR,intron-Distal,intron-Proximal	3.52156	3.84691	HepG2	SF3B4
chr12	133433147	133433219	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15233	3.87582	K562	ZNF622
chr12	133423637	133423721	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.75864	3.86355	HepG2	PPIG
chr12	133425190	133425271	-	CDS,intron-Distal,intron-Proximal	4.70985	7.13970	HepG2	PRPF8
chr12	133438174	133438225	-	CDS,intron-Distal,intron-Proximal	4.62022	4.08604	HepG2	PPIG
chr12	133435698	133435768	-	CDS,intron-Distal	3.66813	3.12746	HepG2	GRWD1
chr12	133446171	133446232	-	CDS,intron-Distal,intron-Proximal	4.92642	4.02817	HepG2	PRPF8
chr12	133419609	133419668	-	CDS,intron-Distal	4.61674	4.67689	HepG2	PPIG
chr12	133420704	133420775	-	CDS,intron-Distal,intron-Proximal	4.40453	3.05889	HepG2	SF3B4
chr12	133423573	133423659	-	CDS,intron-Distal,intron-Proximal	4.54181	4.35676	HepG2	PRPF8
chr12	133433045	133433157	-	CDS,intron-Distal,intron-Proximal	3.37473	6.54857	HepG2	PPIG
chr12	133438051	133438142	-	CDS,intron-Distal,intron-Proximal	3.15923	4.28697	K562	ZNF622
chr12	133428198	133428264	-	CDS,intron-Distal,intron-Proximal	3.33464	3.99124	HepG2	PPIG
chr12	133429997	133430018	-	CDS,intron-Distal,intron-Proximal	5.88889	12.06330	K562	AQR
chr12	133438052	133438094	-	CDS,intron-Distal,intron-Proximal	4.58181	3.71613	K562	UCHL5
chr12	133425237	133425310	-	CDS,intron-Distal	4.12712	3.49905	HepG2	PPIG
chr12	133433012	133433183	-	CDS,intron-Distal,intron-Proximal	3.97395	6.46803	K562	UCHL5
chr12	133438171	133438234	-	CDS,intron-Distal,intron-Proximal	3.16434	5.58362	HepG2	U2AF2
chr12	133419561	133419602	-	CDS,intron-Distal,intron-Proximal	3.81522	5.34978	HepG2	PRPF8
chr12	133438049	133438121	-	CDS,intron-Distal,intron-Proximal	3.28118	6.46638	HepG2	PPIG
chr12	133435689	133435817	-	CDS,intron-Distal,intron-Proximal	4.28797	8.07592	K562	UCHL5
chr12	133405252	133405314	-	5'-UTR,intron-Distal,intron-Proximal	4.11984	16.45778	HepG2	DDX3X
chr12	133531229	133531240	-	intron-Distal	4.62831	4.62831	HepG2	PCBP2
chr12	133530799	133530896	-	intron-Distal	5.59695	10.06964	HepG2	PCBP2
chr12	133531361	133531419	-	intron-Distal	5.50098	5.56287	HepG2	GTF2F1
chr12	133530296	133530346	-	intron-Distal	4.04215	3.59983	HepG2	DROSHA
chr12	133528330	133528449	-	intron-Distal	4.53828	3.32080	HepG2	FUBP3
chr12	133402706	133402747	-	intron-Distal	4.09850	18.23068	HepG2	HNRNPM
chr12	133530986	133531066	-	intron-Distal	6.98612	24.03798	HepG2	DDX59
chr12	133430160	133430212	-	intron-Distal,intron-Proximal	4.69569	4.90235	K562	SF3B4
chr12	133531113	133531181	-	intron-Distal	4.74302	3.48745	HepG2	ILF3
chr12	133445321	133445417	-	intron-Distal	5.56414	7.94547	HepG2	DDX59
chr12	133445526	133445609	-	intron-Distal	4.59842	11.66965	HepG2	HNRNPK
chr12	133403819	133403858	-	intron-Distal	3.74445	11.24252	K562	EXOSC5
chr12	133530904	133530960	-	intron-Distal	6.67067	20.19514	HepG2	PCBP2
chr12	133529483	133529535	-	intron-Distal	4.49950	3.44037	HepG2	DDX59
chr12	133403142	133403184	-	intron-Distal	3.90047	6.31832	K562	HNRNPM
chr12	133451283	133451360	-	intron-Distal	6.21295	14.98013	K562	WRN
chr12	133528387	133528463	-	intron-Distal	5.56404	7.11777	HepG2	DKC1
chr12	133403729	133403797	-	intron-Distal	4.34052	18.52622	HepG2	HNRNPM
chr12	133503300	133503351	-	CDS,intron-Distal	4.11779	3.26547	HepG2	HLTF
chr12	133530480	133530534	-	intron-Distal	5.39316	5.27767	HepG2	GTF2F1
chr12	133405240	133405317	-	5'-UTR,intron-Distal,intron-Proximal	3.10010	6.24873	HepG2	CSTF2T
chr12	133401467	133401518	-	intron-Distal	4.57769	15.52664	HepG2	HNRNPM
chr12	133529522	133529561	-	intron-Distal	4.19292	8.80803	HepG2	CSTF2T
chr12	133531376	133531420	-	intron-Distal	5.38476	7.43678	HepG2	DDX59
chr12	133405190	133405249	-	5'-UTR,intron-Distal	4.26939	3.25012	HepG2	FKBP4
chr12	133531102	133531204	-	intron-Distal	6.91416	20.82716	HepG2	GTF2F1
chr12	133402758	133402801	-	intron-Distal	3.89115	3.71996	HepG2	BCCIP
chr12	133428330	133428382	-	intron-Distal,intron-Proximal	4.93262	4.48002	K562	AQR
chr12	133450981	133451089	-	intron-Distal	5.95096	12.52639	K562	WRN
chr12	133429836	133429853	-	intron-Distal	5.61179	18.31708	HepG2	XPO5
chr12	133531291	133531327	-	intron-Distal	5.03441	4.99324	HepG2	GTF2F1
chr12	133530915	133530941	-	intron-Distal	4.14744	13.12017	HepG2	CSTF2T
chr12	133530756	133530790	-	intron-Distal	3.91074	3.94360	HepG2	GTF2F1
chr12	133526868	133527002	-	intron-Distal	4.68344	4.35455	K562	EIF4G2
chr12	133530654	133530696	-	intron-Distal	4.54210	8.80803	HepG2	CSTF2T
chr12	133532478	133532594	-	intron-Distal	6.43945	24.44403	HepG2	FAM120A
chr12	133403152	133403180	-	intron-Distal	3.44203	8.44177	HepG2	HNRNPM
chr12	133403611	133403731	-	intron-Distal	4.48978	34.08033	K562	EXOSC5
chr12	133529811	133529869	-	intron-Distal	3.89783	8.97207	HepG2	CSTF2T
chr12	133530963	133531015	-	intron-Distal	6.95479	31.50981	HepG2	PCBP2
chr12	133404732	133404793	-	intron-Distal	4.01807	15.06696	K562	EXOSC5
chr12	133403926	133403970	-	intron-Distal	3.76430	4.86331	K562	HNRNPM
chr12	133532277	133532336	-	intron-Distal	4.91733	16.29788	HepG2	CSTF2T
chr12	133532240	133532339	-	intron-Distal	4.58534	3.81373	HepG2	DROSHA
chr12	133403734	133403784	-	intron-Distal	4.15038	4.71271	HepG2	EXOSC5
chr12	133403724	133403759	-	intron-Distal	4.40367	6.77622	K562	HNRNPM
chr12	133531014	133531068	-	intron-Distal	6.46395	17.19303	HepG2	CSTF2T
chr12	133526837	133526886	-	intron-Distal	3.65151	3.72734	HepG2	CSTF2T
chr12	133530478	133530522	-	intron-Distal	6.15059	17.97326	HepG2	CSTF2T
chr12	133402759	133402805	-	intron-Distal	5.40032	20.72804	K562	EXOSC5
chr12	133405177	133405252	-	5'-UTR,intron-Distal	3.99835	15.93423	HepG2	DDX3X
chr12	133404918	133405010	-	5'-UTR,intron-Distal	3.02162	3.93430	K562	FUS
chr12	133401421	133401467	-	intron-Distal	4.78374	17.37225	HepG2	HNRNPM
chr12	133404938	133405011	-	5'-UTR,intron-Distal	3.87760	3.55896	HepG2	STAU2
chr12	133401967	133402021	-	intron-Distal	3.31009	4.16840	HepG2	BCCIP
chr12	133530919	133530965	-	intron-Distal	6.40695	16.20095	HepG2	DDX59
chr12	133531112	133531197	-	intron-Distal	5.37410	27.18109	HepG2	CSTF2T
chr12	133430163	133430227	-	intron-Distal,intron-Proximal	4.66845	6.05374	HepG2	SF3B4
chr12	133402812	133402828	-	intron-Distal	3.85105	4.91037	K562	EXOSC5
chr12	133402674	133402706	-	intron-Distal	5.11322	18.36243	HepG2	HNRNPM
chr12	133405259	133405316	-	5'-UTR,intron-Distal,intron-Proximal	3.23837	3.61689	K562	RBFOX2
chr12	133403598	133403616	-	intron-Distal	3.23490	3.72827	K562	HNRNPM
chr12	133402754	133402803	-	intron-Distal	3.72634	7.98624	K562	HNRNPM
chr12	133405249	133405298	-	5'-UTR,intron-Distal,intron-Proximal	3.79832	3.05559	HepG2	DGCR8
chr12	133529879	133529985	-	intron-Distal	3.48699	8.19203	HepG2	HNRNPM
chr12	133404882	133404978	-	5'-UTR,intron-Distal	3.34170	4.03654	HepG2	SFPQ
chr12	133401833	133401904	-	intron-Distal	3.66683	10.98514	K562	EXOSC5
chr12	133501016	133501084	-	3'-UTR,intron-Distal	4.96182	7.44453	HepG2	HLTF
chr12	133404010	133404044	-	intron-Distal	4.56270	13.37518	K562	EXOSC5
chr12	133403224	133403245	-	intron-Distal	4.12989	10.43881	HepG2	HNRNPM
chr12	133402980	133403023	-	intron-Distal	4.00690	7.98315	K562	HNRNPM
chr12	133532039	133532088	-	intron-Distal	3.43656	7.96389	HepG2	CSTF2T
chr12	133532393	133532433	-	intron-Distal	3.71023	10.65357	HepG2	CSTF2T
chr12	133398680	133398756	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.61321	7.17953	K562	RBM15
chr12	133529644	133529730	-	intron-Distal	4.62716	6.40934	HepG2	HNRNPM
chr12	133404132	133404165	-	intron-Distal,intron-Proximal	4.76880	12.87307	K562	EXOSC5
chr12	133405220	133405247	-	5'-UTR,intron-Distal	4.33372	3.14677	HepG2	EXOSC5
chr12	133404823	133404881	-	intron-Distal	4.07615	6.32338	K562	NONO
chr12	133404859	133404924	-	5'-UTR,intron-Distal	4.74622	17.02035	K562	EXOSC5
chr12	133532712	133532794	-	intron-Distal	3.09419	3.68924	HepG2	PRPF4
chr12	133531006	133531063	-	intron-Distal	4.85189	10.41145	HepG2	HNRNPK
chr12	133445346	133445418	-	intron-Distal	5.40028	11.90007	HepG2	HNRNPK
chr12	133530360	133530420	-	intron-Distal	4.60876	14.10522	HepG2	CSTF2T
chr12	133529564	133529635	-	intron-Distal	3.87360	8.74164	HepG2	CSTF2T
chr12	133403050	133403102	-	intron-Distal	4.06669	7.98315	K562	HNRNPM
chr12	133404708	133404795	-	intron-Distal	3.67420	4.84495	K562	EWSR1
chr12	133529471	133529522	-	intron-Distal	5.34650	9.74347	HepG2	CSTF2T
chr12	133530752	133530786	-	intron-Distal	3.43161	8.05375	HepG2	CSTF2T
chr12	133401960	133402028	-	intron-Distal	3.73352	11.75771	K562	EXOSC5
chr12	133445609	133445659	-	intron-Distal	3.52496	9.12044	HepG2	HNRNPK
chr12	133402697	133402757	-	intron-Distal	3.80445	4.71271	HepG2	EXOSC5
chr12	133530905	133530957	-	intron-Distal	5.63876	9.31915	HepG2	GTF2F1
chr12	133531126	133531245	-	intron-Distal	5.64850	11.18266	HepG2	DROSHA
chr12	133402856	133402893	-	intron-Distal	5.26285	6.36768	K562	HNRNPM
chr12	133402680	133402744	-	intron-Distal	3.95129	3.56080	HepG2	BCCIP
chr12	133404736	133404811	-	intron-Distal	3.56516	3.06644	K562	GTF2F1
chr12	133403640	133403698	-	intron-Distal	5.09526	16.32253	K562	HNRNPM
chr12	133403940	133403957	-	intron-Distal	4.34587	7.67565	HepG2	HNRNPM
chr12	133531203	133531259	-	intron-Distal	6.51884	22.60537	HepG2	CSTF2T
chr12	133530916	133530965	-	intron-Distal	3.42076	3.60809	HepG2	HNRNPK
chr12	133404443	133404495	-	intron-Distal,intron-Proximal	3.42269	9.19436	HepG2	HNRNPC
chr12	133530804	133530905	-	intron-Distal	5.13647	17.26114	HepG2	GTF2F1
chr12	133529700	133529762	-	intron-Distal	5.48338	11.53530	HepG2	CSTF2T
chr12	133404824	133404859	-	intron-Distal	3.67999	5.75592	K562	DROSHA
chr12	133405380	133405433	-	5'-UTR,intron-Distal,intron-Proximal	4.38154	11.11007	HepG2	DDX3X
chr12	133531156	133531239	-	intron-Distal	5.26496	4.65802	K562	DROSHA
chr12	133530941	133530977	-	intron-Distal	4.52240	14.43601	HepG2	CSTF2T
chr12	133532433	133532477	-	intron-Distal	3.87021	12.05819	HepG2	CSTF2T
chr12	133428337	133428416	-	intron-Distal,intron-Proximal	3.16632	3.57857	HepG2	SF3B4
chr12	133526578	133526670	-	intron-Distal	4.28241	8.80803	HepG2	CSTF2T
chr12	133405237	133405369	-	5'-UTR,intron-Distal,intron-Proximal	5.97759	10.13941	K562	XRN2
chr12	133427953	133428042	-	intron-Distal	5.53535	9.05715	HepG2	U2AF2
chr12	133530472	133530540	-	intron-Distal	4.31467	4.70168	K562	CSTF2T
chr12	133404829	133404889	-	intron-Distal	3.14936	5.08467	HepG2	HNRNPM
chr12	133531204	133531244	-	intron-Distal	6.00311	7.57617	HepG2	GTF2F1
chr12	133402524	133402587	-	intron-Distal	5.12058	29.93584	HepG2	HNRNPM
chr12	133529701	133529755	-	intron-Distal	4.11584	5.76537	HepG2	PCBP2
chr12	133531017	133531074	-	intron-Distal	7.48257	39.57707	HepG2	PCBP2
chr12	133404908	133404979	-	5'-UTR,intron-Distal	3.56340	9.11536	K562	HNRNPM
chr12	133532504	133532581	-	intron-Distal	3.96333	3.71567	HepG2	RBFOX2
chr12	133424629	133424671	-	intron-Distal,intron-Proximal	3.66750	5.13777	HepG2	PRPF8
chr12	133404451	133404494	-	intron-Distal,intron-Proximal	3.58975	15.51517	K562	EXOSC5
chr12	133403518	133403565	-	intron-Distal	4.47967	11.45851	K562	HNRNPM
chr12	133447370	133447421	-	intron-Distal,intron-Proximal	4.14754	3.25678	HepG2	SF3B4
chr12	133403819	133403847	-	intron-Distal	3.03206	6.12137	K562	HNRNPM
chr12	133512846	133512940	-	intron-Distal	5.16826	8.82480	HepG2	PTBP1
chr12	133403643	133403702	-	intron-Distal	3.57281	17.09764	HepG2	HNRNPM
chr12	133529432	133529471	-	intron-Distal	4.07250	5.39685	HepG2	CSTF2T
chr12	133531202	133531247	-	intron-Distal	4.68343	7.59655	HepG2	DDX59
chr12	133530974	133531006	-	intron-Distal	4.25793	4.07750	HepG2	HNRNPK
chr12	133404891	133404941	-	5'-UTR,intron-Distal	3.40884	3.48123	K562	XRN2
chr12	133529902	133529937	-	intron-Distal	4.79156	5.41529	HepG2	CSTF2T
chr12	133405177	133405237	-	5'-UTR,intron-Distal	3.74787	6.45801	K562	XRN2
chr12	133403799	133403856	-	intron-Distal	3.66029	13.84609	HepG2	HNRNPM
chr12	133404768	133404810	-	intron-Distal	3.52994	4.20198	HepG2	FAM120A
chr12	133531294	133531332	-	intron-Distal	4.54885	9.81366	HepG2	CSTF2T
chr12	133530362	133530424	-	intron-Distal	4.72314	6.10298	HepG2	GTF2F1
chr12	133401855	133401969	-	intron-Distal	4.59550	8.91551	HepG2	EXOSC5
chr12	133404187	133404232	-	intron-Distal,intron-Proximal	3.97049	15.06986	K562	EXOSC5
chr12	133531370	133531419	-	intron-Distal	5.02958	21.83175	HepG2	CSTF2T
chr12	133405245	133405311	-	5'-UTR,intron-Distal,intron-Proximal	4.03848	7.50713	K562	GEMIN5
chr12	133402767	133402802	-	intron-Distal	3.57641	14.13766	HepG2	HNRNPM
chr12	133405250	133405302	-	5'-UTR,intron-Distal,intron-Proximal	4.21418	4.14518	HepG2	GTF2F1
chr12	133530977	133531014	-	intron-Distal	5.81541	10.23793	HepG2	CSTF2T
chr12	133429963	133429997	-	intron-Distal,intron-Proximal	6.03230	13.28065	K562	AQR
chr12	133401363	133401421	-	intron-Distal	4.23292	14.41844	HepG2	HNRNPM
chr12	133401969	133402014	-	intron-Distal	3.22028	11.81437	HepG2	HNRNPM
chr12	133531835	133531870	-	intron-Distal	3.98719	8.50973	HepG2	CSTF2T
chr12	133404761	133404811	-	intron-Distal	3.56244	3.92966	HepG2	GTF2F1
chr12	133531139	133531201	-	intron-Distal	6.41481	8.19722	HepG2	PCBP2
chr12	133403093	133403111	-	intron-Distal	3.23836	7.81702	HepG2	HNRNPM
chr12	133404992	133405005	-	5'-UTR,intron-Distal	4.13854	6.10949	K562	EXOSC5
chr12	133526708	133526759	-	intron-Distal	3.46811	3.72734	HepG2	CSTF2T
chr12	133404537	133404627	-	intron-Distal,intron-Proximal	3.77489	12.75333	K562	EXOSC5
chr12	133404881	133404972	-	5'-UTR,intron-Distal	4.64206	11.48327	K562	NONO
chr12	133531918	133531954	-	intron-Distal	3.53004	8.52590	HepG2	CSTF2T
chr12	133403574	133403633	-	intron-Distal	4.04705	15.55394	HepG2	HNRNPM
chr12	133529455	133529560	-	intron-Distal	4.01705	4.04290	K562	CSTF2T
chr12	133404925	133404999	-	5'-UTR,intron-Distal	3.11448	5.78739	K562	GEMIN5
chr12	133404810	133404926	-	5'-UTR,intron-Distal	3.90847	10.04312	HepG2	PRPF4
chr12	133529481	133529555	-	intron-Distal	4.36186	4.04504	HepG2	DROSHA
chr12	133403759	133403819	-	intron-Distal	3.59983	10.46638	K562	HNRNPM
chr12	133531141	133531260	-	intron-Distal	4.28060	3.33062	K562	ILF3
chr12	133531349	133531370	-	intron-Distal	4.13468	9.72197	HepG2	CSTF2T
chr12	133400574	133400620	-	intron-Distal	3.07987	5.25752	HepG2	HNRNPC
chr12	133405387	133405442	-	5'-UTR,intron-Distal,intron-Proximal	3.52640	5.44096	K562	DDX3X
chr12	133532487	133532590	-	intron-Distal	5.25789	10.82157	HepG2	PRPF4
chr12	133404888	133404945	-	5'-UTR,intron-Distal	3.99796	4.71271	HepG2	EXOSC5
chr12	133503694	133503746	-	CDS,intron-Distal	3.17978	3.08145	HepG2	HLTF
chr12	133529827	133529858	-	intron-Distal	4.27711	3.97018	HepG2	HNRNPM
chr12	133401969	133402022	-	intron-Distal	4.72272	7.29205	K562	HNRNPM
chr12	133404972	133405042	-	5'-UTR,intron-Distal	3.69896	8.11002	K562	NONO
chr12	133398708	133398770	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.51336	8.28669	HepG2	PPIG
chr12	133404988	133405039	-	5'-UTR,intron-Distal	3.47689	3.64202	K562	HNRNPM
chr12	133402857	133402897	-	intron-Distal	4.87745	17.64486	HepG2	HNRNPM
chr12	133429522	133429553	-	intron-Distal	4.32686	3.37054	HepG2	XPO5
chr12	133531149	133531202	-	intron-Distal	5.79198	7.94547	HepG2	DDX59
chr12	133501091	133501170	-	3'-UTR,intron-Distal	3.59905	4.15543	HepG2	HLTF
chr12	133404904	133404984	-	5'-UTR,intron-Distal	3.29902	7.15969	HepG2	HNRNPM
chr12	133402673	133402738	-	intron-Distal	4.83522	13.52429	K562	HNRNPM
chr12	133532740	133532796	-	intron-Distal	5.10992	17.09690	HepG2	CSTF2T
chr12	133403737	133403794	-	intron-Distal	4.34087	16.03090	K562	EXOSC5
chr12	133398897	133398959	-	5'-UTR,intron-Distal,intron-Proximal	3.19593	3.22539	K562	SMNDC1
chr12	133509569	133509736	-	CDS,intron-Distal,intron-Proximal	4.51638	6.26332	HepG2	GRWD1
chr12	133402515	133402575	-	intron-Distal	4.32847	12.96807	K562	HNRNPM
chr12	133429793	133429836	-	intron-Distal	5.69928	19.46132	HepG2	XPO5
chr12	133405119	133405217	-	5'-UTR,intron-Distal	4.56996	10.06641	K562	NONO
chr12	133405251	133405305	-	5'-UTR,intron-Distal,intron-Proximal	3.72044	6.91468	HepG2	HNRNPM
chr12	133529695	133529748	-	intron-Distal	5.03576	4.42691	HepG2	GTF2F1
chr12	133445575	133445636	-	intron-Distal	4.74825	5.41835	HepG2	DDX59
chr12	133402477	133402506	-	intron-Distal	3.12147	5.37641	K562	HNRNPM
chr12	133403380	133403405	-	intron-Distal	4.42206	8.51158	K562	EXOSC5
chr12	133405218	133405302	-	5'-UTR,intron-Distal,intron-Proximal	3.04489	10.10735	HepG2	XRN2
chr12	133532501	133532581	-	intron-Distal	4.32960	6.37789	HepG2	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CHFR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHFR is not available on ENCORE database.
105 RBPs can affect the levels of CHFR.

The Knockdown/knockout RNA-Seq assay for CHFR is not available on ENCORE database.

105 RBPs can affect the gene expression of CHFR :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHFR	ENSG00000072609.13	672.14890	456.70570	0.55740	3.13550	2.13120	HepG2	ABCF1
CHFR	ENSG00000072609.13	513.22470	412.59840	0.31480	2.20860	1.65260	HepG2	ACO1
CHFR	ENSG00000072609.13	660.10710	430.66920	0.61600	3.89600	3.28070	HepG2	AKAP1
CHFR	ENSG00000072609.13	651.62460	414.56090	0.65240	8.09520	6.86800	HepG2	AKAP8L
CHFR	ENSG00000072609.13	495.72150	356.33370	0.47620	2.63300	1.86730	HepG2	ASCC1
CHFR	ENSG00000072609.13	933.57320	607.77030	0.61910	9.23910	8.10560	HepG2	AUH
CHFR	ENSG00000072609.13	968.29900	397.85300	1.28310	22.09250	20.65520	HepG2	BOP1
CHFR	ENSG00000072609.13	517.64530	253.16690	1.03180	12.54160	11.09580	HepG2	CALR
CHFR	ENSG00000072609.13	642.30160	338.54440	0.92380	9.17320	7.83620	HepG2	CIRBP
CHFR	ENSG00000072609.13	568.45160	412.53760	0.46240	4.53550	3.72420	HepG2	CKAP4
CHFR	ENSG00000072609.13	480.61240	294.86050	0.70470	3.58090	2.70460	HepG2	CNOT7
CHFR	ENSG00000072609.13	456.20310	337.12410	0.43630	3.25900	2.57290	HepG2	CELF1
CHFR	ENSG00000072609.13	472.25700	362.46180	0.38160	2.98380	2.21810	HepG2	DAZAP1
CHFR	ENSG00000072609.13	478.19840	260.39670	0.87680	7.97030	6.87990	HepG2	DDX21
CHFR	ENSG00000072609.13	973.40340	412.52940	1.23840	17.33510	15.91200	HepG2	DDX3X
CHFR	ENSG00000072609.13	570.11720	272.29080	1.06600	7.87240	6.64720	HepG2	DDX55
CHFR	ENSG00000072609.13	654.10990	414.75660	0.65720	3.06220	2.03530	HepG2	DDX59
CHFR	ENSG00000072609.13	501.62870	354.41610	0.50110	1.86790	1.35020	HepG2	DDX6
CHFR	ENSG00000072609.13	585.36100	394.75230	0.56830	3.42250	2.67970	HepG2	DKC1
CHFR	ENSG00000072609.13	547.42360	340.66440	0.68420	4.94370	4.16310	HepG2	EIF2S1
CHFR	ENSG00000072609.13	362.66090	204.97170	0.82310	4.94670	3.76450	HepG2	EIF3D
CHFR	ENSG00000072609.13	337.80200	245.86600	0.45820	2.43870	1.42490	HepG2	EIF3G
CHFR	ENSG00000072609.13	799.20570	376.45270	1.08600	11.82200	10.52870	HepG2	EIF4A3
CHFR	ENSG00000072609.13	463.97740	357.61610	0.37550	2.52490	1.71710	HepG2	EIF4G1
CHFR	ENSG00000072609.13	1172.52280	697.82380	0.74860	14.19270	13.00080	HepG2	ETF1
CHFR	ENSG00000072609.13	599.72020	403.20800	0.57270	4.88130	3.77750	HepG2	EWSR1
CHFR	ENSG00000072609.13	679.35960	461.13800	0.55890	3.14310	2.32790	HepG2	FIP1L1
CHFR	ENSG00000072609.13	228.10900	309.06260	-0.43820	2.10580	1.41230	HepG2	FUBP3
CHFR	ENSG00000072609.13	537.21910	379.89000	0.49980	2.98770	2.26760	HepG2	FXR1
CHFR	ENSG00000072609.13	470.43370	352.36950	0.41680	2.06280	1.48430	HepG2	G3BP1
CHFR	ENSG00000072609.13	392.43690	197.53350	0.99030	8.39900	7.36230	HepG2	HNRNPA1
CHFR	ENSG00000072609.13	441.16650	333.12690	0.40520	2.80820	1.86890	HepG2	HNRNPA2B1
CHFR	ENSG00000072609.13	419.82240	219.71770	0.93400	7.63230	6.52680	HepG2	HNRNPC
CHFR	ENSG00000072609.13	568.02330	356.88590	0.67040	5.15700	4.22540	HepG2	HNRNPK
CHFR	ENSG00000072609.13	413.61850	330.16600	0.32500	2.17510	1.56760	HepG2	HNRNPL
CHFR	ENSG00000072609.13	615.56840	395.07270	0.63970	4.77150	3.96770	HepG2	HNRNPLL
CHFR	ENSG00000072609.13	310.34210	218.26520	0.50770	3.21810	2.56780	HepG2	HNRNPU
CHFR	ENSG00000072609.13	1054.97430	358.16370	1.55840	27.99020	26.11600	HepG2	IGF2BP2
CHFR	ENSG00000072609.13	801.03850	336.17020	1.25260	5.75830	4.36610	HepG2	IGF2BP3
CHFR	ENSG00000072609.13	335.41670	222.95100	0.58910	4.56870	3.64590	HepG2	ILF2
CHFR	ENSG00000072609.13	794.83570	380.02290	1.06450	12.52760	11.17020	HepG2	MAGOH
CHFR	ENSG00000072609.13	629.45050	382.13930	0.71990	5.21220	4.37010	HepG2	MATR3
CHFR	ENSG00000072609.13	342.72950	214.50740	0.67590	2.58710	1.56780	HepG2	METAP2
CHFR	ENSG00000072609.13	569.72600	373.10410	0.61060	4.70040	3.66730	HepG2	MSI2
CHFR	ENSG00000072609.13	887.25700	391.13220	1.18160	14.98160	13.58820	HepG2	NCBP2
CHFR	ENSG00000072609.13	569.23320	359.41790	0.66330	6.93710	5.73630	HepG2	NOL12
CHFR	ENSG00000072609.13	568.64530	250.18290	1.18440	6.67500	4.95680	HepG2	NONO
CHFR	ENSG00000072609.13	612.27370	348.28920	0.81380	7.16840	6.01590	HepG2	PABPC4
CHFR	ENSG00000072609.13	291.90840	216.04740	0.43410	2.30980	1.52940	HepG2	PARN
CHFR	ENSG00000072609.13	409.15650	209.89130	0.96290	6.28220	5.11810	HepG2	PRPF8
CHFR	ENSG00000072609.13	637.01320	399.42130	0.67330	7.50810	6.69530	HepG2	PTBP1
CHFR	ENSG00000072609.13	446.83590	343.10400	0.38100	2.14230	1.60860	HepG2	PUF60
CHFR	ENSG00000072609.13	632.64310	364.22960	0.79640	12.70360	11.62990	HepG2	PUM1
CHFR	ENSG00000072609.13	613.74760	363.95760	0.75380	4.20110	3.38410	HepG2	PUM2
CHFR	ENSG00000072609.13	722.73750	420.26240	0.78210	12.52420	11.37650	HepG2	PUS1
CHFR	ENSG00000072609.13	702.45320	432.63340	0.69920	7.62170	6.66270	HepG2	QKI
CHFR	ENSG00000072609.13	475.89010	249.33900	0.93240	4.99530	4.06280	HepG2	RAVER1
CHFR	ENSG00000072609.13	671.35380	464.33080	0.53180	4.62280	3.54960	HepG2	RBM15
CHFR	ENSG00000072609.13	1274.76940	583.24700	1.12800	27.63470	26.33560	HepG2	RBM22
CHFR	ENSG00000072609.13	400.04740	250.10100	0.67760	3.56840	2.36350	HepG2	RCC2
CHFR	ENSG00000072609.13	795.00070	444.53720	0.83860	12.29260	11.30630	HepG2	NELFE
CHFR	ENSG00000072609.13	763.98670	525.95220	0.53850	4.61820	3.76680	HepG2	RPLP0
CHFR	ENSG00000072609.13	454.11330	244.99480	0.89020	5.60370	4.28270	HepG2	RPS10
CHFR	ENSG00000072609.13	387.64670	199.46670	0.95850	8.37000	7.36880	HepG2	RPS19
CHFR	ENSG00000072609.13	527.74570	284.02080	0.89370	7.23590	5.98240	HepG2	RPS2
CHFR	ENSG00000072609.13	410.27650	289.95100	0.50070	2.30120	1.32730	HepG2	RPS5
CHFR	ENSG00000072609.13	361.12460	207.61030	0.79850	3.98170	3.06040	HepG2	RRP9
CHFR	ENSG00000072609.13	291.72540	200.16400	0.54330	2.42540	1.54240	HepG2	SERBP1
CHFR	ENSG00000072609.13	1252.52000	526.32570	1.25070	15.24700	13.59190	HepG2	SF3A3
CHFR	ENSG00000072609.13	455.61240	226.67690	1.00710	13.54160	12.28560	HepG2	SMN1
CHFR	ENSG00000072609.13	435.94280	254.43100	0.77680	4.94930	3.63480	HepG2	SMNDC1
CHFR	ENSG00000072609.13	652.50270	435.08650	0.58460	2.88810	2.08840	HepG2	SNRNP70
CHFR	ENSG00000072609.13	845.02930	658.74780	0.35920	3.51780	2.97390	HepG2	SRFBP1
CHFR	ENSG00000072609.13	534.33760	434.08340	0.29970	1.73770	1.33850	HepG2	SRSF1
CHFR	ENSG00000072609.13	655.46440	338.77660	0.95210	12.54850	11.34740	HepG2	SRSF5
CHFR	ENSG00000072609.13	710.84220	571.93470	0.31360	2.58640	2.08520	HepG2	SSB
CHFR	ENSG00000072609.13	362.39060	257.50290	0.49290	2.31720	1.32610	HepG2	STIP1
CHFR	ENSG00000072609.13	616.22010	385.27260	0.67750	8.88120	7.87340	HepG2	SUCLG1
CHFR	ENSG00000072609.13	417.90500	311.28740	0.42480	2.29470	1.43280	HepG2	SUPT6H
CHFR	ENSG00000072609.13	554.97130	271.01520	1.03390	7.31700	6.30130	HepG2	SUPV3L1
CHFR	ENSG00000072609.13	298.73500	390.12310	-0.38510	2.18970	1.68090	HepG2	TAF15
CHFR	ENSG00000072609.13	624.48370	385.18620	0.69700	5.99060	4.98050	HepG2	TARDBP
CHFR	ENSG00000072609.13	361.65130	181.62390	0.99350	6.70520	5.27180	HepG2	TFIP11
CHFR	ENSG00000072609.13	519.59400	212.09220	1.29260	18.44090	17.36040	HepG2	TIAL1
CHFR	ENSG00000072609.13	305.60530	213.98090	0.51410	2.19160	1.67800	HepG2	TRIM56
CHFR	ENSG00000072609.13	490.58490	335.21360	0.54930	3.14390	2.20830	HepG2	TUFM
CHFR	ENSG00000072609.13	741.88570	394.41040	0.91140	9.22340	8.06860	HepG2	U2AF1
CHFR	ENSG00000072609.13	789.61750	354.82860	1.15390	12.70650	10.86830	HepG2	UBE2L3
CHFR	ENSG00000072609.13	282.68390	160.06550	0.82040	4.44830	3.48480	HepG2	UCHL5
CHFR	ENSG00000072609.13	609.27300	466.77050	0.38430	3.37040	2.61240	HepG2	UPF1
CHFR	ENSG00000072609.13	723.83180	450.64850	0.68360	7.03180	6.15110	HepG2	UTP3
CHFR	ENSG00000072609.13	446.33770	274.24320	0.70260	3.97190	2.70240	HepG2	XRCC6
CHFR	ENSG00000072609.13	1228.51690	513.35810	1.25880	45.13540	43.62070	HepG2	ZNF622
CHFR	ENSG00000072609.13	504.58580	705.24440	-0.48300	4.66390	3.96120	K562	AGGF1
CHFR	ENSG00000072609.13	512.90600	846.27500	-0.72240	6.66280	5.81580	K562	AQR
CHFR	ENSG00000072609.13	404.24390	267.34290	0.59640	3.49410	2.51360	K562	BOP1
CHFR	ENSG00000072609.13	531.92730	394.20690	0.43220	2.71480	1.44890	K562	CIRBP
CHFR	ENSG00000072609.13	914.11010	1150.73360	-0.33210	3.22150	2.17110	K562	CELF1
CHFR	ENSG00000072609.13	919.12270	682.95870	0.42840	4.90400	4.07150	K562	DDX47
CHFR	ENSG00000072609.13	451.60650	307.21920	0.55570	2.79420	1.50810	K562	EEF2
CHFR	ENSG00000072609.13	427.99880	296.83790	0.52780	3.16690	2.18590	K562	EFTUD2
CHFR	ENSG00000072609.13	724.55080	567.15430	0.35320	2.47910	1.79180	K562	EIF2S2
CHFR	ENSG00000072609.13	477.11950	317.83000	0.58600	3.50250	2.32590	K562	EIF3D
CHFR	ENSG00000072609.13	770.10710	935.68090	-0.28100	2.48280	1.58940	K562	EIF4G2
CHFR	ENSG00000072609.13	546.47720	409.10720	0.41760	2.61600	1.79220	K562	FIP1L1
CHFR	ENSG00000072609.13	483.07390	354.14990	0.44780	2.40460	1.84280	K562	HNRNPC
CHFR	ENSG00000072609.13	470.95600	343.92970	0.45340	2.73990	1.76430	K562	PCBP2
CHFR	ENSG00000072609.13	569.29060	433.63510	0.39260	2.71250	1.92020	K562	POLR2G
CHFR	ENSG00000072609.13	511.67290	375.56890	0.44600	3.20420	2.49560	K562	PTBP1
CHFR	ENSG00000072609.13	793.81650	1086.07870	-0.45230	5.15560	3.66660	K562	PUM1
CHFR	ENSG00000072609.13	499.30420	360.09410	0.47140	3.11310	2.21700	K562	RBM22
CHFR	ENSG00000072609.13	489.33470	351.04730	0.47910	2.88820	1.47280	K562	RBM34
CHFR	ENSG00000072609.13	510.73650	378.94880	0.43050	2.51450	1.47840	K562	NELFE
CHFR	ENSG00000072609.13	529.32640	294.23840	0.84710	6.58270	5.31270	K562	RPS19
CHFR	ENSG00000072609.13	374.67820	241.32720	0.63460	3.22120	2.13230	K562	RPS3
CHFR	ENSG00000072609.13	707.59700	890.69990	-0.33200	2.99340	1.42280	K562	SUCLG1
CHFR	ENSG00000072609.13	419.05880	279.68470	0.58330	3.32070	2.19910	K562	SUPV3L1
CHFR	ENSG00000072609.13	576.05870	372.61750	0.62840	4.05020	3.18800	K562	TARDBP
CHFR	ENSG00000072609.13	479.21060	359.43540	0.41480	2.58960	1.80040	K562	TIA1
CHFR	ENSG00000072609.13	468.48940	296.00760	0.66230	4.62700	3.27630	K562	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHFR is not available on ENCORE database.

9 RBPs can affect the splicing of CHFR :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHFR	ENSG00000072609.13	chr12	-	133419596	133419669			133417560	133418182	133420612	133420720	-0.20500	0.00020	0.01053	excluded	K562	PRPF8
SE	CHFR	ENSG00000072609.13	chr12	-	133524740	133524856			133522206	133522383	133532828	133532890	-0.16000	0.00128	0.01744	excluded	HepG2	U2AF2
SE	CHFR	ENSG00000072609.13	chr12	-	133446204	133446384			133438052	133438220	133447309	133447369	-0.51300	0.00001	0.00056	excluded	HepG2	SRSF1
SE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011			133438052	133438220	133447309	133447369	0.40900	0.00032	0.02934	included	K562	HNRNPUL1
SE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011			133438052	133438220	133447309	133447369	0.35100	0.00034	0.06139	included	K562	NPM1
A3SS	CHFR	ENSG00000072609.13	chr12	-	133446309	133446473			133446309	133446384	133447309	133447369	0.12200	0.00093	0.06632	longer	HepG2	SF3A3
A3SS	CHFR	ENSG00000072609.13	chr12	-	133419596	133419694			133419596	133419669	133420612	133420804	0.07400	0.00047	0.00353	longer	K562	AQR
MXE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011	133446204	133446420	133438052	133438220	133447309	133447369	-0.17100	0.00419	0.04861	2included	K562	DROSHA
MXE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011	133446204	133446384	133438052	133438220	133447309	133447369	-0.08100	0.00749	0.07193	2included	K562	DROSHA
MXE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011	133446204	133446384	133438052	133438220	133447309	133447369	0.07900	0.00119	0.03646	1included	K562	SBDS
MXE	CHFR	ENSG00000072609.13	chr12	-	133438918	133439011	133446204	133446384	133438052	133438220	133447309	133447369	-0.07900	0.00772	0.08151	2included	K562	HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHFR

General Information

Functions

Localization

Domains (AlphaFold: CHFR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHFR is not avaliable on ENCORE database.

42 proteins are bound to CHFR RNA:

eCLIP assay for CHFR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHFR is not available on ENCORE database.

105 RBPs can affect the gene expression of CHFR :

The Knockdown/knockout RNA-Seq assay for CHFR is not available on ENCORE database.

9 RBPs can affect the splicing of CHFR :

The Knockdown/knockout RNA-Seq assay for CHFR is not avaliable on ENCORE database.