CHCHD3

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHCHD3	ENSG00000106554.12	98.38	91.44	94.91	ENCSR000AEF
HepG2	CHCHD3	ENSG00000106554.12	43.95	61.68	52.81	ENCSR985KAT
K562	CHCHD3	ENSG00000106554.12	158.29	187.56	172.93	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CHCHD3-BGKcLV28-K562	ENCSR307GHU	CHCHD3	K562	Released		ENCSR220DTX	CRISPR	KD% = 53.8,51.6
knockdown followed by RNA-seq	CHCHD3-BGHcLV29-HepG2	ENCSR206ICZ	CHCHD3	HepG2	Released		ENCSR462MFN	CRISPR	KD% = 57.1,59.8

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CHCHD3	ENCAB646GEA	A305-497A	1			Released, ENCODE4	BGHcLV29-17, Released, ENCODE4	BGKcLV28-17, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
CHCHD3	K562	CRISPR	ENCSR307GHU	ENCSR220DTX	CHCHD3-BGKcLV28-17,CHCHD3-BGKcLV28-18	NT-BGKcLV28-1,NT-BGKcLV28-2	53.8,51.6	Released	ENCODE4
CHCHD3	HepG2	CRISPR	ENCSR206ICZ	ENCSR462MFN	CHCHD3-BGHcLV29-17,CHCHD3-BGHcLV29-18	NT-BGHcLV29-1,NT-BGHcLV29-2	57.1,59.8	Released	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHCHD3 is not avaliable on ENCORE database.

Proteins bound to RNA

CHCHD3 RNA is bound by 35 proteins.

eCLIP assay for CHCHD3 is not avaliable on ENCORE database.

35 proteins are bound to CHCHD3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	132470081	132470109	-	3'-UTR,intron-Distal	5.93272	19.05428	K562	YBX3
chr7	132481244	132481284	-	3'-UTR,CDS,intron-Distal	3.41189	5.76403	K562	UCHL5
chr7	132470194	132470322	-	3'-UTR,intron-Distal,intron-Proximal	4.45198	10.26194	K562	IGF2BP1
chr7	132470061	132470081	-	3'-UTR,intron-Distal	4.84366	16.98892	K562	YBX3
chr7	132481275	132481338	-	3'-UTR,CDS,intron-Distal	4.36388	8.65847	K562	ZNF800
chr7	132469918	132470014	-	3'-UTR,intron-Distal	4.39764	10.50859	K562	UPF1
chr7	132469858	132469902	-	3'-UTR,intron-Distal	4.23989	3.69433	K562	UPF1
chr7	132481231	132481336	-	3'-UTR,CDS,intron-Distal	3.07641	6.57225	K562	PUM1
chr7	132469831	132469884	-	3'-UTR,intron-Distal	4.87619	5.13703	HepG2	SUB1
chr7	132470262	132470327	-	3'-UTR,intron-Distal,intron-Proximal	3.69883	3.12746	HepG2	GRWD1
chr7	132469676	132469721	-	3'-UTR,intron-Distal	3.10633	5.56979	K562	YBX3
chr7	132766770	132766830	-	5'-UTR,intron-Distal,intron-Proximal	3.94445	3.48187	K562	RBM15
chr7	132766725	132766794	-	5'-UTR,intron-Distal	3.22872	3.84532	K562	XRCC6
chr7	132766697	132766805	-	5'-UTR,intron-Distal,intron-Proximal	4.10934	15.15746	HepG2	DDX3X
chr7	132766723	132766779	-	5'-UTR,intron-Distal	4.19690	19.21794	K562	DDX3X
chr7	132766667	132766826	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.50730	10.76242	HepG2	GRWD1
chr7	132766667	132766828	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.34262	8.21237	HepG2	NCBP2
chr7	132766667	132766723	-	5'-UTR,CDS,intron-Distal	3.88483	19.21794	K562	DDX3X
chr7	132766779	132766830	-	5'-UTR,intron-Distal,intron-Proximal	5.01105	10.17596	K562	DDX3X
chr7	132659928	132659988	-	CDS,intron-Distal,intron-Proximal	3.21412	16.74851	K562	ZNF622
chr7	132659916	132659980	-	CDS,intron-Distal,intron-Proximal	4.49859	3.89826	HepG2	BCLAF1
chr7	132570423	132570457	-	CDS,intron-Distal	3.71984	6.80293	K562	YBX3
chr7	132523174	132523229	-	CDS,intron-Distal	3.59395	8.79185	K562	ZNF800
chr7	132709304	132709350	-	CDS,intron-Distal,intron-Proximal	3.22690	6.42293	K562	PUM1
chr7	132659978	132660039	-	CDS,intron-Distal	3.59646	10.56098	K562	GRWD1
chr7	132766610	132766663	-	CDS,intron-Distal	3.69587	4.68902	HepG2	PPIG
chr7	132659927	132659978	-	CDS,intron-Distal,intron-Proximal	3.72748	8.80557	K562	GRWD1
chr7	132570421	132570461	-	CDS,intron-Distal,intron-Proximal	3.99896	7.31178	K562	ZNF800
chr7	132754966	132754986	-	CDS,intron-Distal	4.81087	5.14565	K562	UCHL5
chr7	132523194	132523213	-	CDS,intron-Distal	4.29281	5.16762	K562	YBX3
chr7	132659925	132659978	-	CDS,intron-Distal,intron-Proximal	3.02079	8.43119	K562	UCHL5
chr7	132659984	132660047	-	CDS,intron-Distal,intron-Proximal	3.09069	12.13184	K562	ZNF800
chr7	132709303	132709385	-	CDS,intron-Distal,intron-Proximal	3.72039	5.97823	HepG2	BCLAF1
chr7	132675654	132675743	-	intron-Distal	4.09444	4.00200	K562	EIF4G2
chr7	132708611	132708768	-	intron-Distal	5.94058	15.78113	HepG2	QKI
chr7	132592212	132592318	-	intron-Distal	3.43964	8.63791	K562	PTBP1
chr7	132733986	132734044	-	intron-Distal	4.62397	7.17304	K562	KHSRP
chr7	132523340	132523469	-	intron-Distal	3.85725	6.69500	K562	KHSRP
chr7	132720301	132720354	-	intron-Distal	4.10045	9.36815	K562	YBX3
chr7	132548474	132548568	-	intron-Distal	4.12395	3.65589	K562	SAFB2
chr7	132745960	132746022	-	intron-Distal	4.62280	3.55787	K562	PTBP1
chr7	132733864	132733986	-	intron-Distal	5.19906	9.23289	K562	KHSRP
chr7	132651272	132651400	-	intron-Distal	3.11223	7.67875	K562	KHSRP
chr7	132651208	132651272	-	intron-Distal	3.61565	11.90038	K562	KHSRP
chr7	132623421	132623506	-	intron-Distal	3.99613	3.78162	K562	HNRNPM
chr7	132721009	132721091	-	intron-Distal	3.71057	6.62503	K562	KHSRP
chr7	132743772	132743871	-	intron-Distal	3.82928	3.23532	K562	MATR3
chr7	132723070	132723116	-	intron-Distal	5.97003	7.17157	K562	PUM2
chr7	132608848	132608986	-	intron-Distal	4.24855	4.75572	K562	MATR3
chr7	132606968	132607046	-	intron-Distal	4.48946	4.66737	HepG2	MATR3
chr7	132646202	132646321	-	intron-Distal	3.51478	8.79239	K562	KHSRP
chr7	132731802	132731876	-	intron-Distal	4.04037	6.44495	HepG2	U2AF2
chr7	132753370	132753469	-	intron-Distal	3.50203	4.73075	K562	MATR3
chr7	132653955	132654011	-	intron-Distal	3.85146	3.49011	K562	KHSRP
chr7	132648418	132648518	-	intron-Distal	5.34106	13.63371	K562	QKI
chr7	132727377	132727490	-	intron-Distal	3.06875	4.81136	K562	KHSRP
chr7	132541111	132541173	-	intron-Distal	3.46909	6.87667	K562	CSTF2T
chr7	132646321	132646339	-	intron-Distal	3.05786	3.31830	K562	KHSRP
chr7	132720431	132720441	-	intron-Distal,intron-Proximal	3.34896	4.43122	HepG2	SUB1
chr7	132722736	132722865	-	intron-Distal	4.01087	10.23826	K562	KHSRP
chr7	132720403	132720458	-	intron-Distal,intron-Proximal	3.42156	5.10345	K562	METAP2
chr7	132546912	132546978	-	intron-Distal	3.24515	5.81842	K562	PTBP1
chr7	132633088	132633194	-	intron-Distal	3.08012	6.04104	K562	PTBP1
chr7	132720440	132720509	-	intron-Distal,intron-Proximal	4.54514	10.68247	K562	PABPC4
chr7	132743654	132743740	-	intron-Distal	4.29625	4.78128	HepG2	SUGP2
chr7	132564275	132564389	-	intron-Distal	5.03152	9.03730	K562	HNRNPM
chr7	132564275	132564345	-	intron-Distal	3.61337	3.39857	HepG2	HNRNPM
chr7	132652791	132652845	-	intron-Distal	4.12945	4.02846	K562	HNRNPM
chr7	132641218	132641346	-	intron-Distal	3.84268	6.48117	K562	KHSRP
chr7	132733811	132733909	-	intron-Distal	3.83800	3.34609	K562	TARDBP
chr7	132709141	132709297	-	intron-Distal,intron-Proximal	3.77506	6.69500	K562	KHSRP
chr7	132743669	132743790	-	intron-Distal	3.45138	4.32964	K562	HNRNPM
chr7	132719648	132719740	-	intron-Distal	5.79389	14.13181	K562	LIN28B
chr7	132525623	132525694	-	intron-Distal	4.22623	7.29464	K562	TARDBP
chr7	132722008	132722055	-	intron-Distal	3.86826	3.25538	K562	KHSRP
chr7	132731958	132732066	-	intron-Distal	5.03185	9.23289	K562	KHSRP
chr7	132542466	132542526	-	intron-Distal	4.11939	4.51328	K562	SAFB2
chr7	132753401	132753462	-	intron-Distal	3.66935	4.22415	K562	PTBP1
chr7	132570345	132570406	-	intron-Distal,intron-Proximal	3.23148	4.10408	K562	KHSRP
chr7	132490482	132490572	-	intron-Distal	3.53680	4.24981	K562	MATR3
chr7	132749890	132749936	-	intron-Distal	6.31122	13.79809	K562	FMR1
chr7	132655863	132655971	-	intron-Distal	3.03840	5.42536	K562	KHSRP
chr7	132543093	132543179	-	intron-Distal	4.00921	3.86679	K562	SAFB2
chr7	132570901	132570978	-	intron-Distal	3.05178	3.11628	K562	KHSRP
chr7	132719139	132719192	-	intron-Distal	4.04497	4.07352	K562	KHSRP
chr7	132609495	132609601	-	intron-Distal	4.93938	7.88729	K562	TARDBP
chr7	132639897	132640021	-	intron-Distal	3.54822	5.18214	HepG2	HNRNPL
chr7	132638744	132638808	-	intron-Distal	3.87139	3.80954	K562	HNRNPL
chr7	132718784	132718904	-	intron-Distal	3.35480	9.55730	K562	KHSRP
chr7	132491343	132491397	-	intron-Distal	3.91382	3.62418	K562	PTBP1
chr7	132719524	132719580	-	intron-Distal	4.32971	3.03355	K562	METAP2
chr7	132723063	132723136	-	intron-Distal	4.43622	5.46313	K562	KHSRP
chr7	132508494	132508562	-	intron-Distal	3.88961	3.22972	K562	TARDBP
chr7	132592232	132592303	-	intron-Distal	4.13924	3.62238	HepG2	MATR3
chr7	132590656	132590738	-	intron-Distal	3.84003	8.47371	K562	KHSRP
chr7	132701047	132701213	-	intron-Distal	4.69045	4.51080	HepG2	HNRNPL
chr7	132695622	132695732	-	intron-Distal	3.68556	5.47669	K562	PTBP1
chr7	132666408	132666483	-	intron-Distal	3.76302	3.06150	K562	KHSRP
chr7	132720441	132720481	-	intron-Distal,intron-Proximal	4.74467	7.83342	HepG2	SUB1
chr7	132546855	132546917	-	intron-Distal	4.66826	6.36200	HepG2	PTBP1
chr7	132606953	132607047	-	intron-Distal	3.20134	4.82768	K562	MATR3
chr7	132495210	132495355	-	intron-Distal	3.78592	3.06150	K562	KHSRP
chr7	132586238	132586352	-	intron-Distal	3.81878	5.57819	K562	UCHL5
chr7	132751427	132751481	-	intron-Distal	4.17055	4.13641	K562	TARDBP
chr7	132733054	132733109	-	intron-Distal	3.69072	5.38829	K562	KHSRP
chr7	132731128	132731202	-	intron-Distal	4.74974	5.91698	K562	KHSRP
chr7	132751979	132752095	-	intron-Distal	3.14929	6.26770	K562	KHSRP
chr7	132639879	132639907	-	intron-Distal	3.12143	5.73784	K562	AGGF1
chr7	132708663	132708757	-	intron-Distal	3.56925	10.80729	K562	QKI
chr7	132651143	132651208	-	intron-Distal	4.01777	11.44618	K562	KHSRP
chr7	132720458	132720490	-	intron-Distal,intron-Proximal	3.30751	3.44826	K562	METAP2
chr7	132592149	132592360	-	intron-Distal	4.82074	13.24469	K562	MATR3
chr7	132720063	132720117	-	intron-Distal	5.30967	19.12076	K562	YBX3
chr7	132652807	132652846	-	intron-Distal	3.27711	3.11000	HepG2	HNRNPM
chr7	132543231	132543291	-	intron-Distal	3.01275	3.36168	K562	SAFB2
chr7	132720410	132720431	-	intron-Distal,intron-Proximal	3.22846	3.57288	HepG2	SUB1
chr7	132648427	132648510	-	intron-Distal	3.82232	6.08171	HepG2	QKI
chr7	132754723	132754792	-	intron-Distal	4.62397	6.09994	K562	KHSRP
chr7	132718692	132718771	-	intron-Distal	3.14810	3.73266	K562	KHSRP
chr7	132591155	132591216	-	intron-Distal	4.03809	3.89294	K562	KHSRP
chr7	132522990	132523050	-	intron-Distal	4.10785	3.25538	K562	KHSRP
chr7	132610370	132610443	-	intron-Distal	3.23293	3.50893	K562	TARDBP
chr7	132485512	132485580	-	intron-Distal	4.20142	4.67922	K562	PTBP1
chr7	132752095	132752222	-	intron-Distal	3.68928	11.26860	K562	KHSRP
chr7	132745993	132746108	-	intron-Distal	4.97423	7.64982	K562	MATR3
chr7	132546855	132546912	-	intron-Distal	3.91932	5.02233	K562	PTBP1
chr7	132571789	132571870	-	intron-Distal	3.25794	6.18396	K562	KHSRP
chr7	132606347	132606408	-	intron-Distal	3.62695	4.98210	K562	SND1
chr7	132491464	132491535	-	intron-Distal	4.17634	3.88340	K562	TARDBP
chr7	132595667	132595762	-	intron-Distal	3.32360	3.79878	K562	MATR3
chr7	132572334	132572383	-	intron-Distal	3.57840	3.02234	K562	KHSRP
chr7	132755043	132755124	-	intron-Distal,intron-Proximal	4.01777	3.89294	K562	KHSRP
chr7	132597139	132597232	-	intron-Distal	4.29664	7.00366	K562	LIN28B
chr7	132708804	132708923	-	intron-Distal	4.82425	6.38584	HepG2	QKI
chr7	132701577	132701658	-	intron-Distal	4.27042	4.31871	HepG2	HNRNPM
chr7	132697495	132697574	-	intron-Distal	4.71006	4.86763	HepG2	PCBP2
chr7	132640909	132641002	-	intron-Distal	3.49892	3.11000	HepG2	HNRNPM
chr7	132749885	132749935	-	intron-Distal	4.20642	4.49655	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CHCHD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHCHD3 is not available on ENCORE database.
112 RBPs can affect the levels of CHCHD3.

The Knockdown/knockout RNA-Seq assay for CHCHD3 is not available on ENCORE database.

112 RBPs can affect the gene expression of CHCHD3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHCHD3	ENSG00000106554.7	668.82070	865.03940	-0.37110	4.04200	3.33320	HepG2	ACO1
CHCHD3	ENSG00000106554.7	227.70020	869.05410	-1.93230	60.23950	57.47250	HepG2	AKAP8L
CHCHD3	ENSG00000106554.7	909.57760	1168.17970	-0.36100	2.35280	1.62520	HepG2	ASCC1
CHCHD3	ENSG00000106554.7	1021.82750	1205.62510	-0.23860	2.22410	1.59630	HepG2	AUH
CHCHD3	ENSG00000106554.7	550.77350	741.14250	-0.42830	2.66010	1.77760	HepG2	BCLAF1
CHCHD3	ENSG00000106554.7	578.07060	864.79180	-0.58110	9.06890	7.99780	HepG2	CKAP4
CHCHD3	ENSG00000106554.7	928.59380	1500.35610	-0.69220	8.49660	7.34820	HepG2	CPSF6
CHCHD3	ENSG00000106554.7	1054.10100	853.29070	0.30480	2.77950	1.75990	HepG2	YBX3
CHCHD3	ENSG00000106554.7	576.03960	784.67890	-0.44590	2.72780	1.44670	HepG2	DDX27
CHCHD3	ENSG00000106554.7	747.29170	1352.41500	-0.85580	10.44540	9.30180	HepG2	DDX3X
CHCHD3	ENSG00000106554.7	479.85700	838.67920	-0.80550	7.28710	6.10070	HepG2	DDX55
CHCHD3	ENSG00000106554.7	1175.01580	1703.76840	-0.53600	2.66740	1.70900	HepG2	DDX59
CHCHD3	ENSG00000106554.7	658.01650	830.48010	-0.33580	3.63230	2.90410	HepG2	DNAJC2
CHCHD3	ENSG00000106554.7	613.34870	803.80510	-0.39010	2.42990	1.39290	HepG2	EFTUD2
CHCHD3	ENSG00000106554.7	237.42030	1116.81740	-2.23390	49.97230	47.73410	HepG2	EIF2S1
CHCHD3	ENSG00000106554.7	741.91030	1234.16130	-0.73420	7.08420	6.06130	HepG2	EIF4A3
CHCHD3	ENSG00000106554.7	801.70450	1201.73070	-0.58400	3.85410	3.04690	HepG2	EIF4B
CHCHD3	ENSG00000106554.7	974.18410	1239.33670	-0.34730	2.35640	1.60290	HepG2	EIF4G2
CHCHD3	ENSG00000106554.7	1076.25330	1384.19290	-0.36300	4.32380	3.60130	HepG2	ETF1
CHCHD3	ENSG00000106554.7	494.76020	787.28960	-0.67020	7.24190	5.55420	HepG2	FASTKD2
CHCHD3	ENSG00000106554.7	701.75080	912.53710	-0.37890	2.93780	2.12930	HepG2	FUBP3
CHCHD3	ENSG00000106554.7	448.79940	1155.18600	-1.36400	21.70170	19.91320	HepG2	G3BP1
CHCHD3	ENSG00000106554.7	948.85590	1226.48860	-0.37030	2.56890	1.71310	HepG2	G3BP2
CHCHD3	ENSG00000106554.7	1207.43690	1700.73830	-0.49420	4.07940	3.31450	HepG2	GPKOW
CHCHD3	ENSG00000106554.7	380.27310	557.45710	-0.55180	2.79550	1.67810	HepG2	GRSF1
CHCHD3	ENSG00000106554.7	581.44400	845.87060	-0.54080	4.94670	4.11630	HepG2	HNRNPA1
CHCHD3	ENSG00000106554.7	981.47500	1205.16250	-0.29620	2.65850	1.74050	HepG2	HNRNPA2B1
CHCHD3	ENSG00000106554.7	307.81340	497.49510	-0.69260	4.41320	2.63630	HepG2	HNRNPAB
CHCHD3	ENSG00000106554.7	439.91260	940.88630	-1.09680	16.38700	14.83750	HepG2	HNRNPC
CHCHD3	ENSG00000106554.7	850.53640	1235.56000	-0.53870	8.55710	7.38560	HepG2	HNRNPF
CHCHD3	ENSG00000106554.7	895.58860	1169.92810	-0.38550	2.87660	2.16370	HepG2	HNRNPK
CHCHD3	ENSG00000106554.7	1043.65310	1623.04880	-0.63710	7.10310	6.14800	HepG2	HNRNPLL
CHCHD3	ENSG00000106554.7	669.07340	934.66480	-0.48230	6.50860	5.61170	HepG2	HNRNPU
CHCHD3	ENSG00000106554.7	911.25610	1216.67680	-0.41700	4.21550	3.33830	HepG2	IGF2BP1
CHCHD3	ENSG00000106554.7	852.70280	1174.19120	-0.46160	3.55010	2.79480	HepG2	IGF2BP2
CHCHD3	ENSG00000106554.7	786.79210	1181.09200	-0.58610	4.10080	2.85950	HepG2	KHSRP
CHCHD3	ENSG00000106554.7	899.74770	1245.81340	-0.46950	3.62870	2.87750	HepG2	MAGOH
CHCHD3	ENSG00000106554.7	945.89890	1167.85350	-0.30410	2.07740	1.37140	HepG2	MSI2
CHCHD3	ENSG00000106554.7	532.91010	1282.24820	-1.26670	19.81190	18.21950	HepG2	NCBP2
CHCHD3	ENSG00000106554.7	512.88480	770.21640	-0.58660	2.75660	1.66620	HepG2	NONO
CHCHD3	ENSG00000106554.7	602.67700	1141.82790	-0.92190	11.37710	9.93950	HepG2	PABPC4
CHCHD3	ENSG00000106554.7	869.09250	1170.38600	-0.42940	5.59790	4.78120	HepG2	PCBP1
CHCHD3	ENSG00000106554.7	591.25980	966.53030	-0.70900	4.92120	3.56700	HepG2	PCBP2
CHCHD3	ENSG00000106554.7	1210.49110	1026.40850	0.23790	2.15520	1.46500	HepG2	PRPF4
CHCHD3	ENSG00000106554.7	554.68210	1016.06400	-0.87330	6.82780	4.99390	HepG2	PRPF6
CHCHD3	ENSG00000106554.7	452.32770	646.87760	-0.51610	3.45330	2.56070	HepG2	PRPF8
CHCHD3	ENSG00000106554.7	668.69600	1190.95470	-0.83270	16.78370	15.65520	HepG2	PTBP1
CHCHD3	ENSG00000106554.7	977.66230	1241.24140	-0.34440	2.58620	2.00780	HepG2	PUF60
CHCHD3	ENSG00000106554.7	1108.73580	1317.69680	-0.24910	2.55320	1.97840	HepG2	PUM1
CHCHD3	ENSG00000106554.7	953.35020	1316.69430	-0.46580	5.06440	4.17120	HepG2	PUM2
CHCHD3	ENSG00000106554.7	751.33750	881.09000	-0.22980	1.90430	1.37380	HepG2	PUS1
CHCHD3	ENSG00000106554.7	775.97130	1289.74140	-0.73300	12.07320	10.90350	HepG2	QKI
CHCHD3	ENSG00000106554.7	633.67730	1170.55800	-0.88540	14.18370	12.72290	HepG2	RBM25
CHCHD3	ENSG00000106554.7	999.52830	1325.38240	-0.40710	5.14540	4.44470	HepG2	NELFE
CHCHD3	ENSG00000106554.7	875.69070	1234.47860	-0.49540	7.12470	6.20410	HepG2	RECQL
CHCHD3	ENSG00000106554.7	661.83150	916.21740	-0.46920	2.36320	1.48860	HepG2	RPS10
CHCHD3	ENSG00000106554.7	329.41030	639.88650	-0.95790	8.83890	7.54050	HepG2	RRP9
CHCHD3	ENSG00000106554.7	544.03080	764.39760	-0.49060	3.42290	2.37330	HepG2	SERBP1
CHCHD3	ENSG00000106554.7	1074.93840	1502.91720	-0.48350	2.74790	2.07590	HepG2	SF3A3
CHCHD3	ENSG00000106554.7	1004.85680	1606.47910	-0.67690	8.77900	7.59110	HepG2	SF3B1
CHCHD3	ENSG00000106554.7	846.29210	1239.86020	-0.55090	8.50320	7.55520	HepG2	SF3B4
CHCHD3	ENSG00000106554.7	653.95240	970.65330	-0.56980	9.61560	8.53170	HepG2	SMN1
CHCHD3	ENSG00000106554.7	699.01360	951.01460	-0.44410	2.46680	1.56630	HepG2	SMNDC1
CHCHD3	ENSG00000106554.7	1104.63980	1787.49640	-0.69440	5.08880	4.01770	HepG2	SNRNP70
CHCHD3	ENSG00000106554.7	1096.42830	1306.72460	-0.25310	2.61260	2.12020	HepG2	SRFBP1
CHCHD3	ENSG00000106554.7	1025.30390	1225.62210	-0.25750	2.22570	1.65740	HepG2	SRSF5
CHCHD3	ENSG00000106554.7	774.06670	1213.88670	-0.64910	11.67150	10.41220	HepG2	SRSF7
CHCHD3	ENSG00000106554.7	467.23230	1052.90930	-1.17220	31.68100	30.21280	HepG2	SRSF9
CHCHD3	ENSG00000106554.7	383.84920	526.35340	-0.45550	2.29350	1.30650	HepG2	STIP1
CHCHD3	ENSG00000106554.7	593.64680	834.86450	-0.49190	3.29680	2.56580	HepG2	SUPV3L1
CHCHD3	ENSG00000106554.7	962.05320	1582.05550	-0.71760	9.53030	8.30050	HepG2	TARDBP
CHCHD3	ENSG00000106554.7	821.83560	1068.86220	-0.37920	2.70460	1.87700	HepG2	TIA1
CHCHD3	ENSG00000106554.7	636.21720	908.15780	-0.51340	5.42150	4.76920	HepG2	TIAL1
CHCHD3	ENSG00000106554.7	976.82540	1283.74080	-0.39420	2.41500	1.63710	HepG2	UBE2L3
CHCHD3	ENSG00000106554.7	1050.73690	1332.85800	-0.34310	4.49000	3.63620	HepG2	UPF1
CHCHD3	ENSG00000106554.7	1257.98640	1465.88830	-0.22070	2.57490	2.04190	HepG2	ZNF622
CHCHD3	ENSG00000106554.7	6261.02930	5268.12870	0.24900	4.21140	3.53680	K562	AGGF1
CHCHD3	ENSG00000106554.7	3513.43430	5481.68260	-0.64170	11.08620	9.65890	K562	AKAP8L
CHCHD3	ENSG00000106554.7	3036.25220	5505.67940	-0.85860	17.41360	16.10490	K562	AQR
CHCHD3	ENSG00000106554.7	3649.49570	5639.17050	-0.62780	8.44190	6.87310	K562	BOP1
CHCHD3	ENSG00000106554.7	4832.19090	6204.54330	-0.36060	3.00710	1.51750	K562	BUD13
CHCHD3	ENSG00000106554.7	5689.92090	8468.58580	-0.57370	3.56810	2.33450	K562	CNOT7
CHCHD3	ENSG00000106554.7	6644.24250	7568.44310	-0.18790	2.42550	1.39610	K562	CPEB4
CHCHD3	ENSG00000106554.7	3746.29540	5996.11330	-0.67860	14.94970	13.09380	K562	CPSF6
CHCHD3	ENSG00000106554.7	1962.99140	2450.49730	-0.32000	2.78010	1.72110	K562	CSTF2
CHCHD3	ENSG00000106554.7	2153.13070	2584.89380	-0.26370	2.28270	1.34130	K562	DDX3X
CHCHD3	ENSG00000106554.7	9644.00930	7831.55470	0.30020	6.03770	5.12700	K562	DDX47
CHCHD3	ENSG00000106554.7	7634.11140	5898.95960	0.37190	7.08690	5.57550	K562	DKC1
CHCHD3	ENSG00000106554.7	1661.40860	2788.86720	-0.74730	11.02490	9.07720	K562	EFTUD2
CHCHD3	ENSG00000106554.7	2026.66030	2839.35160	-0.48650	10.13640	7.76700	K562	EIF2S1
CHCHD3	ENSG00000106554.7	3204.53890	4763.07960	-0.57180	14.74280	13.27980	K562	EIF2S2
CHCHD3	ENSG00000106554.7	3128.63640	2225.05760	0.49160	2.76580	1.76310	K562	EIF3A
CHCHD3	ENSG00000106554.7	3468.11670	2258.68920	0.61860	13.59050	11.79030	K562	EIF3G
CHCHD3	ENSG00000106554.7	6557.84560	7570.78160	-0.20720	2.46710	1.57560	K562	EIF4G2
CHCHD3	ENSG00000106554.7	3724.05200	6100.79250	-0.71210	12.23840	10.35930	K562	FMR1
CHCHD3	ENSG00000106554.7	3212.04560	5170.92390	-0.68690	9.49040	7.69280	K562	FTO
CHCHD3	ENSG00000106554.7	3455.69120	2808.51650	0.29910	4.38980	3.65130	K562	FXR1
CHCHD3	ENSG00000106554.7	3541.13090	5724.85820	-0.69300	13.14190	11.39090	K562	GPKOW
CHCHD3	ENSG00000106554.7	4375.42210	6347.18900	-0.53670	9.31530	7.90650	K562	GRSF1
CHCHD3	ENSG00000106554.7	4822.53550	7924.92940	-0.71660	5.95320	3.66920	K562	HNRNPAB
CHCHD3	ENSG00000106554.7	2269.12160	4103.30680	-0.85470	16.27940	14.91110	K562	HNRNPC
CHCHD3	ENSG00000106554.7	3561.96670	4387.21770	-0.30060	4.07570	2.98280	K562	HNRNPU
CHCHD3	ENSG00000106554.7	3004.57040	4888.19520	-0.70210	7.23240	5.64170	K562	KRR1
CHCHD3	ENSG00000106554.7	7825.21070	6517.14850	0.26380	2.47570	1.62380	K562	MBNL1
CHCHD3	ENSG00000106554.7	4387.39810	5588.08120	-0.34900	4.10250	3.02180	K562	METAP2
CHCHD3	ENSG00000106554.7	6512.19900	8069.79330	-0.30940	2.67450	1.56540	K562	MSI2
CHCHD3	ENSG00000106554.7	3065.10680	5509.47980	-0.84600	40.53410	38.11990	K562	MTPAP
CHCHD3	ENSG00000106554.7	4344.08370	6121.67020	-0.49490	24.73920	22.85360	K562	NSUN2
CHCHD3	ENSG00000106554.7	2399.96580	3033.45190	-0.33790	3.33440	2.25990	K562	PCBP2
CHCHD3	ENSG00000106554.7	2877.15690	3495.64150	-0.28090	2.95870	2.12940	K562	POLR2G
CHCHD3	ENSG00000106554.7	1417.79370	3039.62610	-1.10020	8.85050	5.95640	K562	PRPF6
CHCHD3	ENSG00000106554.7	6787.78310	8260.36940	-0.28330	2.92480	2.08610	K562	PUF60
CHCHD3	ENSG00000106554.7	6521.44150	8608.75720	-0.40060	8.08830	6.41930	K562	PUM2
CHCHD3	ENSG00000106554.7	6354.63430	5436.64080	0.22500	1.78020	1.32550	K562	PUS1
CHCHD3	ENSG00000106554.7	2376.96860	3176.34430	-0.41820	4.50400	3.40220	K562	RBM22
CHCHD3	ENSG00000106554.7	2724.70860	2224.50280	0.29250	4.44050	2.44040	K562	RPS10
CHCHD3	ENSG00000106554.7	3403.49060	2764.53870	0.29990	2.10650	1.39810	K562	RPS19
CHCHD3	ENSG00000106554.7	4134.97060	3254.81750	0.34520	3.09390	2.02990	K562	RPS3
CHCHD3	ENSG00000106554.7	3814.47630	3114.72230	0.29230	2.87210	1.76900	K562	SAFB
CHCHD3	ENSG00000106554.7	4063.73490	3220.25200	0.33550	3.13410	1.59190	K562	SDAD1
CHCHD3	ENSG00000106554.7	4479.07930	6040.31310	-0.43140	9.56960	8.12120	K562	SF3A3
CHCHD3	ENSG00000106554.7	3464.56010	5444.37700	-0.65210	7.96100	6.25780	K562	SF3B1
CHCHD3	ENSG00000106554.7	4017.02090	6964.99890	-0.79400	3.96250	2.28880	K562	SFPQ
CHCHD3	ENSG00000106554.7	2353.00770	3181.52560	-0.43520	4.32250	2.95740	K562	SRFBP1
CHCHD3	ENSG00000106554.7	4767.91090	6188.41190	-0.37620	11.35050	9.61170	K562	SRPK2
CHCHD3	ENSG00000106554.7	3409.18280	4015.22440	-0.23610	2.95630	1.74570	K562	SRSF7
CHCHD3	ENSG00000106554.7	1877.79280	2627.88090	-0.48490	4.25280	2.97000	K562	SUPV3L1
CHCHD3	ENSG00000106554.7	4726.38790	3506.22890	0.43070	6.84250	5.53950	K562	SYNCRIP
CHCHD3	ENSG00000106554.7	2430.17850	3286.31480	-0.43540	4.44330	3.54130	K562	TARDBP
CHCHD3	ENSG00000106554.7	2656.54660	3758.75780	-0.50070	6.67070	5.05480	K562	TRIM56
CHCHD3	ENSG00000106554.7	2278.84940	2735.13650	-0.26330	2.63090	1.84670	K562	U2AF2
CHCHD3	ENSG00000106554.7	2221.32650	2781.16090	-0.32430	2.44820	1.49660	K562	UCHL5
CHCHD3	ENSG00000106554.7	4705.43250	6490.92540	-0.46410	14.03960	12.57340	K562	UPF1
CHCHD3	ENSG00000106554.7	4057.67470	6497.50070	-0.67920	8.71530	6.69530	K562	UTP3
CHCHD3	ENSG00000106554.7	4642.40020	5554.09830	-0.25870	2.59060	1.74170	K562	WDR3
CHCHD3	ENSG00000106554.7	7185.69100	5775.49060	0.31510	7.65820	6.31810	K562	WDR43
CHCHD3	ENSG00000106554.7	4934.57930	6202.10330	-0.32980	3.40560	2.43330	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHCHD3 is not available on ENCORE database.

3 RBPs can affect the splicing of CHCHD3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHCHD3	ENSG00000106554.7	chr7	-	132523158	132523260			132481202	132481338	132570421	132570505	-0.05300	0.00000	0.00001	excluded	K562	AQR
A3SS	CHCHD3	ENSG00000106554.7	chr7	-	132481202	132481374			132481202	132481338	132523158	132523229	0.10000	0.00000	0.00000	longer	K562	AQR
A3SS	CHCHD3	ENSG00000106554.7	chr7	-	132523158	132523390			132523158	132523229	132570421	132570505	0.05100	0.00000	0.00000	longer	K562	AQR
A3SS	CHCHD3	ENSG00000106554.7	chr7	-	132570421	132570601			132570421	132570505	132659928	132660046	0.08200	0.00000	0.00000	longer	K562	AQR
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132481202	132481338	132570421	132570529	132470270	132470421	132659928	132660046	0.06400	0.00000	0.00000	1included	K562	AQR
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132523158	132523229	132570421	132570529	132481202	132481338	132659928	132660046	0.08400	0.00000	0.00000	1included	K562	AQR
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132570421	132570505	132659928	132660065	132522360	132523229	132709305	132709387	0.05300	0.00000	0.00000	1included	K562	AQR
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132570421	132570529	132659928	132660065	132522360	132523229	132709305	132709387	0.05600	0.00000	0.00000	1included	K562	AQR
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132523158	132523229	132570421	132570505	132470285	132470421	132659928	132660046	-0.09300	0.00000	0.00000	2included	K562	SF3B4
MXE	CHCHD3	ENSG00000106554.7	chr7	-	132481202	132481338	132523158	132523229	132470285	132470421	132570421	132570505	0.07200	0.00339	0.06324	1included	K562	FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHCHD3

General Information

Functions

Localization

Domains (AlphaFold: CHCHD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHCHD3 is not avaliable on ENCORE database.

35 proteins are bound to CHCHD3 RNA:

eCLIP assay for CHCHD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHCHD3 is not available on ENCORE database.

112 RBPs can affect the gene expression of CHCHD3 :

The Knockdown/knockout RNA-Seq assay for CHCHD3 is not available on ENCORE database.

3 RBPs can affect the splicing of CHCHD3 :

The Knockdown/knockout RNA-Seq assay for CHCHD3 is not avaliable on ENCORE database.