CCDC50

General Information

Gene Name       : CCDC50
Gene ID             : ENSG00000152492.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC50)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC50ENSG00000152492.1493.4393.3593.39ENCSR000AEF
HepG2CCDC50ENSG00000152492.1431.6046.7339.16ENCSR985KAT
K562CCDC50ENSG00000152492.1428.4328.1928.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC50 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC50 RNA is bound by 19 proteins.  







eCLIP assay for CCDC50 is not avaliable on ENCORE database.





19 proteins are bound to CCDC50 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3191116245191116299+3'-UTR4.481825.45333HepG2CSTF2
chr3191112388191112436+3'-UTR4.352543.83958HepG2QKI
chr3191109619191109802+3'-UTR3.848085.23915K562IGF2BP1
chr3191110968191111071+3'-UTR3.856323.62890K562FAM120A
chr3191047273191047350+5'-UTR4.076538.31998HepG2DDX3X
chr3191047282191047308+5'-UTR3.648365.95764K562YBX3
chr3191047435191047516+5'-UTR,CDS,intron-Proximal3.611403.21664HepG2UCHL5
chr3191047441191047501+5'-UTR,CDS3.225094.34695HepG2BCLAF1
chr3191047354191047380+5'-UTR3.236326.48978HepG2GRWD1
chr3191047444191047513+5'-UTR,CDS,intron-Proximal4.219218.24591HepG2GRWD1
chr3191047380191047437+5'-UTR3.811819.65478HepG2GRWD1
chr3191047453191047571+5'-UTR,CDS,intron-Proximal3.319076.22359HepG2BUD13
chr3191047203191047265+5'-UTR3.579958.31280HepG2GRWD1
chr3191047352191047428+5'-UTR3.539084.62864K562ZNF622
chr3191047308191047340+5'-UTR3.173625.74118K562YBX3
chr3191047350191047434+5'-UTR4.0940514.21431HepG2DDX3X
chr3191047215191047262+5'-UTR4.417518.97908HepG2DDX3X
chr3191100571191100617+CDS,intron-Proximal3.116516.33024HepG2BCLAF1
chr3191097966191098012+CDS4.2413014.68146HepG2BCLAF1
chr3191087707191087774+CDS,intron-Proximal3.131966.70485HepG2GRWD1
chr3191097939191098013+CDS,intron-Proximal3.227574.57751HepG2U2AF2
chr3191087706191087763+CDS,intron-Proximal3.755784.49347K562UCHL5
chr3191098022191098089+CDS,intron-Proximal4.022745.34978HepG2PRPF8
chr3191098627191098722+CDS,intron-Proximal3.5137310.33948HepG2GRWD1
chr3191098474191098517+CDS,intron-Proximal3.1401310.73945HepG2BCLAF1
chr3191098624191098726+CDS,intron-Proximal3.635406.14048K562ZNF622
chr3191098483191098514+CDS3.276475.18023HepG2GRWD1
chr3191087756191087826+CDS,intron-Proximal3.4429111.17783HepG2BCLAF1
chr3191097944191097966+CDS,intron-Proximal3.524107.66871HepG2BCLAF1
chr3191078909191078949+CDS,intron-Proximal4.161094.07072K562UCHL5
chr3191087774191087832+CDS,intron-Proximal4.3972010.18376HepG2GRWD1
chr3191097945191098064+CDS,intron-Proximal3.8262413.31102HepG2GRWD1
chr3191098004191098068+CDS,intron-Proximal3.660687.55042HepG2PPIG
chr3191098474191098483+CDS,intron-Proximal3.051854.55250HepG2GRWD1
chr3191078868191078938+CDS3.653734.06531HepG2GRWD1
chr3191098012191098064+CDS,intron-Proximal4.1277015.30407HepG2BCLAF1
chr3191075798191075892+CDS4.193853.81597K562RBM15
chr3191087704191087771+CDS,intron-Proximal3.164314.76953K562DDX24
chr3191074876191074939+CDS,intron-Proximal3.095616.18069HepG2GRWD1
chr3191100532191100571+CDS,intron-Proximal3.346236.91872HepG2BCLAF1
chr3191048086191048159+intron-Distal4.808663.71677HepG2HNRNPL
chr3191048050191048086+intron-Distal3.667953.02891HepG2HNRNPL
chr3191106840191106936+intron-Distal5.8387813.68181HepG2PTBP1
chr3191063669191063763+intron-Distal4.034533.48768HepG2KHSRP
chr3191105620191105778+intron-Distal5.5638611.64245HepG2QKI
chr3191063665191063787+intron-Distal3.652834.08064K562KHSRP
chr3191052457191052526+intron-Distal4.557074.40847HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC50 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC50 is not available on ENCORE database.

  • 102 RBPs can affect the levels of CCDC50.  








The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.





102 RBPs can affect the gene expression of CCDC50 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC50ENSG00000152492.92193.225203089.81020-0.494504.949403.72590HepG2ABCF1
CCDC50ENSG00000152492.91668.980902120.00120-0.345102.769001.77140HepG2ADAR
CCDC50ENSG00000152492.92143.555402632.29180-0.296304.316103.37340HepG2AKAP8L
CCDC50ENSG00000152492.92377.753703294.79190-0.470604.598603.59870HepG2ASCC1
CCDC50ENSG00000152492.94165.916403488.185100.256103.878503.09120HepG2AUH
CCDC50ENSG00000152492.93029.013902386.346000.343902.487001.91640HepG2BOP1
CCDC50ENSG00000152492.93271.115702521.243800.375504.800703.81840HepG2CALR
CCDC50ENSG00000152492.92217.258403845.78040-0.794505.058703.72080HepG2CCAR1
CCDC50ENSG00000152492.92223.242403130.28370-0.493605.163604.12540HepG2CIRBP
CCDC50ENSG00000152492.91745.683102619.46110-0.5855014.9127013.62440HepG2CKAP4
CCDC50ENSG00000152492.92563.368303709.96780-0.533403.293602.45300HepG2CNOT7
CCDC50ENSG00000152492.93778.278603207.454400.236204.223703.33830HepG2DAZAP1
CCDC50ENSG00000152492.91968.201802423.02320-0.299905.154204.06290HepG2DDX19B
CCDC50ENSG00000152492.91169.192201981.86240-0.761307.662006.58990HepG2DDX21
CCDC50ENSG00000152492.92978.330403814.46530-0.357002.831302.19880HepG2DDX3X
CCDC50ENSG00000152492.94112.744502487.870600.725103.790502.65140HepG2DDX59
CCDC50ENSG00000152492.91848.146702506.46470-0.439605.082204.21430HepG2DKC1
CCDC50ENSG00000152492.91818.607602134.85020-0.231302.260001.61900HepG2DNAJC21
CCDC50ENSG00000152492.91844.367102115.74330-0.198002.037601.46130HepG2DNAJC2
CCDC50ENSG00000152492.91746.859802329.10530-0.415003.301002.30130HepG2EEF2
CCDC50ENSG00000152492.92439.907203149.97330-0.368502.996602.37980HepG2EIF2S1
CCDC50ENSG00000152492.92318.070201890.839600.293802.223901.40490HepG2EIF3D
CCDC50ENSG00000152492.92425.523703481.05620-0.521204.604103.78170HepG2EIF4A3
CCDC50ENSG00000152492.92491.556703389.36280-0.444002.894502.19170HepG2EIF4B
CCDC50ENSG00000152492.92568.215804004.73760-0.6409018.0472016.73290HepG2ETF1
CCDC50ENSG00000152492.92573.031501888.069600.446505.247403.74760HepG2FASTKD2
CCDC50ENSG00000152492.95246.458103119.959800.749707.358606.16700HepG2FIP1L1
CCDC50ENSG00000152492.92526.066301942.682100.378704.105703.15650HepG2FUBP3
CCDC50ENSG00000152492.92218.785803512.34450-0.662708.487507.33090HepG2FXR1
CCDC50ENSG00000152492.91190.964001683.58560-0.499404.162303.05230HepG2GEMIN5
CCDC50ENSG00000152492.92088.996503434.26620-0.717206.119504.45980HepG2GRSF1
CCDC50ENSG00000152492.92306.054603136.70370-0.443802.826401.43650HepG2HNRNPA0
CCDC50ENSG00000152492.91289.712802155.29990-0.7408012.3588011.15230HepG2HNRNPA1
CCDC50ENSG00000152492.92668.452503299.31020-0.306202.553101.88130HepG2HNRNPK
CCDC50ENSG00000152492.91395.712302152.61930-0.625109.775108.17520HepG2HNRNPM
CCDC50ENSG00000152492.91415.643602381.44460-0.7504014.8906013.57560HepG2HNRNPU
CCDC50ENSG00000152492.92068.832402495.67450-0.270602.607801.90480HepG2IGF2BP1
CCDC50ENSG00000152492.91717.913803311.82830-0.9470016.2990014.82660HepG2IGF2BP2
CCDC50ENSG00000152492.92684.407703534.62380-0.397002.691901.52040HepG2KHDRBS1
CCDC50ENSG00000152492.92790.905204058.51840-0.540203.240002.33910HepG2LARP4
CCDC50ENSG00000152492.92559.000403513.57120-0.457404.260203.44920HepG2MAGOH
CCDC50ENSG00000152492.92319.907803533.21920-0.606906.325605.40240HepG2MATR3
CCDC50ENSG00000152492.91834.537902525.06120-0.460905.878204.74000HepG2MSI2
CCDC50ENSG00000152492.91816.472203616.43250-0.9934016.5117015.04840HepG2NCBP2
CCDC50ENSG00000152492.92147.285703161.66120-0.5582014.7750013.55330HepG2PCBP1
CCDC50ENSG00000152492.91669.426702000.98130-0.261403.081902.27070HepG2PRPF4
CCDC50ENSG00000152492.91774.154602635.58280-0.571003.826202.40360HepG2PRPF6
CCDC50ENSG00000152492.92847.485103217.06910-0.176101.949501.47570HepG2PTBP1
CCDC50ENSG00000152492.91998.357903036.02400-0.603409.697208.67450HepG2PUF60
CCDC50ENSG00000152492.92789.012903220.50200-0.207501.927001.36110HepG2PUM2
CCDC50ENSG00000152492.92377.014902668.42800-0.166801.925701.39220HepG2PUS1
CCDC50ENSG00000152492.95941.673802419.610001.2960014.2849012.79930HepG2RAVER1
CCDC50ENSG00000152492.94512.760703347.254100.430908.674207.87520HepG2RBM22
CCDC50ENSG00000152492.91694.342802232.81940-0.398102.624901.59420HepG2RCC2
CCDC50ENSG00000152492.92419.609203580.32180-0.5653015.1361014.06160HepG2NELFE
CCDC50ENSG00000152492.92602.600803334.52370-0.357506.798605.89430HepG2RECQL
CCDC50ENSG00000152492.91891.925102536.05950-0.422703.001202.16840HepG2RPS2
CCDC50ENSG00000152492.92523.143503724.93570-0.562004.450503.43640HepG2RPS3A
CCDC50ENSG00000152492.91713.920501389.221800.302902.268001.54890HepG2RRP9
CCDC50ENSG00000152492.92244.230003015.96090-0.426402.561701.91280HepG2SF3A3
CCDC50ENSG00000152492.92021.193002473.33250-0.291203.202602.51870HepG2SMN1
CCDC50ENSG00000152492.94534.399303780.661400.262205.201204.57410HepG2SRFBP1
CCDC50ENSG00000152492.92657.090703496.07690-0.395908.867208.12810HepG2SRSF1
CCDC50ENSG00000152492.92033.578103282.61590-0.6908021.4125020.28040HepG2SSB
CCDC50ENSG00000152492.93256.027202261.106100.526003.435402.08770HepG2SUB1
CCDC50ENSG00000152492.92705.023503409.11730-0.333807.267406.34040HepG2SUCLG1
CCDC50ENSG00000152492.92135.335303644.49510-0.771303.456902.26890HepG2TBRG4
CCDC50ENSG00000152492.93613.122702887.458300.323302.356301.58310HepG2TIA1
CCDC50ENSG00000152492.91409.191902314.33650-0.7157012.6250011.69020HepG2TIAL1
CCDC50ENSG00000152492.91087.411501659.33080-0.609702.311701.39970HepG2UPF2
CCDC50ENSG00000152492.92246.833202582.31330-0.200802.351201.78930HepG2UTP3
CCDC50ENSG00000152492.91161.065301783.27610-0.619103.240302.45940HepG2XRN2
CCDC50ENSG00000152492.91309.812701036.759600.337202.629701.48390K562AARS
CCDC50ENSG00000152492.91728.339102266.75240-0.391203.652902.22520K562ABCF1
CCDC50ENSG00000152492.91137.309402455.37030-1.1103023.5728022.04680K562AQR
CCDC50ENSG00000152492.92913.878202473.664800.236202.367001.52770K562ATP5C1
CCDC50ENSG00000152492.9883.200401119.61050-0.342203.702102.58450K562BCLAF1
CCDC50ENSG00000152492.91215.955501578.87370-0.376802.700801.30490K562BUD13
CCDC50ENSG00000152492.91240.341802002.55370-0.691104.442803.05080K562CNOT7
CCDC50ENSG00000152492.9712.978601302.46900-0.8693015.0633013.19730K562CPSF6
CCDC50ENSG00000152492.9635.92130849.39130-0.417603.588202.36050K562CSTF2
CCDC50ENSG00000152492.91099.881301326.66950-0.270502.439801.30860K562DDX21
CCDC50ENSG00000152492.92713.993702150.784500.335505.269004.41010K562DDX47
CCDC50ENSG00000152492.9648.96750970.05000-0.579905.014803.76760K562EFTUD2
CCDC50ENSG00000152492.91913.253901578.848700.277103.083502.33130K562EIF2S2
CCDC50ENSG00000152492.91027.206701393.78130-0.440303.686702.74340K562EIF4A3
CCDC50ENSG00000152492.9823.972601255.23110-0.607306.003204.18830K562EIF4B
CCDC50ENSG00000152492.9801.034501038.93580-0.375203.230501.84780K562EXOSC5
CCDC50ENSG00000152492.9871.225601123.23090-0.366502.455401.59560K562FTO
CCDC50ENSG00000152492.9960.710601449.48380-0.593405.322604.52100K562FXR1
CCDC50ENSG00000152492.92036.730101450.748000.489403.186102.41900K562G3BP2
CCDC50ENSG00000152492.9864.996701243.54450-0.523705.528104.41000K562GPKOW
CCDC50ENSG00000152492.91238.993202103.94460-0.7639013.4937011.80330K562GRSF1
CCDC50ENSG00000152492.91158.948501415.42690-0.288402.388701.39400K562HNRNPA1
CCDC50ENSG00000152492.92914.394902209.127100.399603.847602.91270K562HSPD1
CCDC50ENSG00000152492.9772.133601061.81320-0.459602.653801.74260K562KRR1
CCDC50ENSG00000152492.91376.865501827.68840-0.408604.414103.34640K562MAGOH
CCDC50ENSG00000152492.91315.577401824.02930-0.471405.688404.30120K562MATR3
CCDC50ENSG00000152492.9938.306401213.83520-0.371403.086202.15950K562METAP2
CCDC50ENSG00000152492.91125.531601569.19320-0.479408.369807.03400K562MTPAP
CCDC50ENSG00000152492.91325.439901743.46060-0.395507.889906.71920K562NSUN2
CCDC50ENSG00000152492.91413.275001849.64960-0.388203.399702.47470K562PPIG
CCDC50ENSG00000152492.91982.885303090.11080-0.640109.735408.18200K562PUF60
CCDC50ENSG00000152492.92721.277703220.42840-0.243002.825901.85660K562PUM2
CCDC50ENSG00000152492.93429.731402338.232300.552606.911406.09830K562PUS1
CCDC50ENSG00000152492.92257.825101384.101900.705904.833502.87850K562RAVER1
CCDC50ENSG00000152492.92626.692602278.146500.205301.877501.37190K562RBM15
CCDC50ENSG00000152492.91390.240901702.84930-0.292602.204101.45790K562RBM22
CCDC50ENSG00000152492.9676.71030928.01180-0.455604.047602.84710K562RCC2
CCDC50ENSG00000152492.91425.59820961.643000.567905.124404.01000K562RPS19
CCDC50ENSG00000152492.91168.615701637.31330-0.486503.977701.76910K562SAFB2
CCDC50ENSG00000152492.91045.117501720.43100-0.7191015.3521013.54510K562SF3A3
CCDC50ENSG00000152492.91264.347401508.12780-0.254402.126801.37920K562SF3B4
CCDC50ENSG00000152492.91300.812601762.62590-0.438307.916606.42830K562SRPK2
CCDC50ENSG00000152492.91287.624701740.73220-0.435004.949604.00670K562SRSF1
CCDC50ENSG00000152492.9666.14080914.15470-0.456602.904901.86160K562SUPV3L1
CCDC50ENSG00000152492.9564.23240978.40150-0.794108.433106.72670K562TIAL1
CCDC50ENSG00000152492.9809.154901039.34970-0.361202.788801.83760K562TRIM56
CCDC50ENSG00000152492.91214.785801848.63250-0.6058013.8383012.38000K562UPF1
CCDC50ENSG00000152492.91924.614001644.946300.226402.829801.97460K562WDR43
CCDC50ENSG00000152492.91983.594102766.02500-0.479705.876804.54620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.





5 RBPs can affect the splicing of CCDC50 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC50ENSG00000152492.9chr3+1910928501910933781910877071910878251910979471910980630.266000.000000.00000includedHepG2U2AF1
SECCDC50ENSG00000152492.9chr3+1910928501910933781910877071910878251910979471910980630.068000.000000.00000includedHepG2U2AF2
SECCDC50ENSG00000152492.9chr3+1910928501910933781910877071910878251910979471910980630.104000.000000.00000includedHepG2SFPQ
SECCDC50ENSG00000152492.9chr3+1910928501910933781910877071910878251910979471910980630.076000.000000.00000includedK562U2AF1
SECCDC50ENSG00000152492.9chr3+1910928501910933781910877071910878251910979471910980630.077000.000030.00243includedK562SF3B1
SECCDC50ENSG00000152492.9chr3+191100534191100614191098616191098721191107284191107391-0.165000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC50 is not avaliable on ENCORE database.