ATP2B4

General Information

Gene Name       : ATP2B4
Gene ID             : ENSG00000058668.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP2B4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATP2B4ENSG00000058668.146.325.706.01ENCSR000AEF
HepG2ATP2B4ENSG00000058668.147.437.987.71ENCSR985KAT
K562ATP2B4ENSG00000058668.1417.6619.2818.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP2B4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP2B4 RNA is bound by 18 proteins.  







eCLIP assay for ATP2B4 is not avaliable on ENCORE database.





18 proteins are bound to ATP2B4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1203711622203711662+3'-UTR3.636044.40891K562FAM120A
chr1203711332203711355+3'-UTR3.437833.37207K562FAM120A
chr1203710521203710592+3'-UTR4.017528.93225K562FAM120A
chr1203709029203709109+3'-UTR3.253893.68882K562FAM120A
chr1203710458203710521+3'-UTR4.1098012.02194K562FAM120A
chr1203712381203712452+3'-UTR4.218724.20872K562IGF2BP1
chr1203710546203710611+3'-UTR3.913923.35877HepG2UPF1
chr1203710354203710415+3'-UTR4.010243.92497HepG2UPF1
chr1203709625203709691+3'-UTR5.5560310.18755K562UPF1
chr1203710449203710608+3'-UTR4.5335123.45029K562UPF1
chr1203710748203710794+3'-UTR3.038476.18673K562UPF1
chr1203710592203710644+3'-UTR3.783346.82399K562FAM120A
chr1203712579203712636+3'-UTR3.252894.14964K562UPF1
chr1203713070203713142+3'-UTR4.456093.26739K562FAM120A
chr1203710682203710713+3'-UTR4.765665.94928K562UPF1
chr1203710437203710511+3'-UTR3.421244.45619HepG2UPF1
chr1203712581203712658+3'-UTR3.954757.91182K562FAM120A
chr1203651869203651935+5'-UTR,intron-Proximal3.465375.11155K562YBX3
chr1203652199203652353+5'-UTR,CDS4.471028.41475HepG2BCLAF1
chr1203676173203676230+CDS3.321233.79230K562SND1
chr1203669925203670005+CDS,intron-Proximal3.874334.98210K562SND1
chr1203679955203680015+CDS,intron-Proximal3.610734.57435K562SF3B4
chr1203678497203678578+CDS3.280003.34359K562SND1
chr1203677157203677218+CDS3.461883.20659K562SND1
chr1203677192203677233+CDS,intron-Proximal3.033663.50044K562YBX3
chr1203680172203680237+CDS,intron-Proximal4.225757.48753K562ZNF622
chr1203693008203693100+CDS,intron-Distal,intron-Proximal3.001533.14823K562SND1
chr1203682277203682349+CDS,intron-Proximal3.822433.00996K562BUD13
chr1203668587203668637+CDS,intron-Proximal3.160224.14618K562ZNF622
chr1203671126203671252+CDS,intron-Distal,intron-Proximal3.680395.47851K562SF3B4
chr1203672766203672930+CDS,intron-Proximal3.331034.63109K562GRWD1
chr1203668667203668788+CDS3.269823.76985K562MTPAP
chr1203678428203678490+CDS,intron-Proximal3.636803.03966HepG2SND1
chr1203669333203669453+CDS,intron-Proximal3.946213.60441HepG2GRWD1
chr1203652365203652467+CDS3.975663.56019HepG2GRWD1
chr1203670045203670104+CDS,intron-Proximal3.053363.84771K562ZNF622
chr1203671202203671269+CDS,intron-Distal,intron-Proximal3.360593.04392K562AQR
chr1203690370203690440+CDS4.189723.83751K562SND1
chr1203691779203691818+CDS,intron-Proximal3.406784.11795K562YBX3
chr1203672873203672944+CDS,intron-Proximal4.291073.89826HepG2BCLAF1
chr1203680072203680132+CDS4.509923.77218HepG2SND1
chr1203691679203691745+CDS3.574065.55970K562YBX3
chr1203676279203676339+CDS3.636803.03966HepG2SND1
chr1203676177203676257+CDS3.648366.21348K562YBX3
chr1203672797203672855+CDS3.889935.96588K562ZNF622
chr1203652353203652441+CDS4.950116.71715HepG2BCLAF1
chr1203698748203698777+intron-Distal5.35033400.00000HepG2DKC1
chr1203702209203702324+intron-Distal,intron-Proximal4.526674.32196HepG2PCBP2
chr1203671614203671734+intron-Distal3.931943.33944K562MATR3
chr1203698777203698829+intron-Distal5.19078400.00000HepG2DKC1
chr1203671724203671863+intron-Distal5.7615711.61334K562PTBP1
chr1203671048203671118+intron-Distal,intron-Proximal3.234173.37074K562TIA1
chr1203698714203698748+intron-Distal5.23671400.00000HepG2DKC1
chr1203695926203696071+intron-Distal4.621663.28818K562LSM11
chr1203678678203678739+intron-Proximal3.800456.79537K562AQR
chr1203678670203678678+intron-Proximal3.895794.52312K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP2B4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP2B4 is not available on ENCORE database.

  • 115 RBPs can affect the levels of ATP2B4.  








The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.





115 RBPs can affect the gene expression of ATP2B4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP2B4ENSG00000058668.10978.35380752.288600.379004.537803.79580HepG2ACO1
ATP2B4ENSG00000058668.101735.144201086.555600.675206.346005.57730HepG2AKAP1
ATP2B4ENSG00000058668.101452.566401217.004700.255202.409801.76050HepG2AUH
ATP2B4ENSG00000058668.10355.54190692.62250-0.962008.725007.02220HepG2BCCIP
ATP2B4ENSG00000058668.101232.12810840.663900.551505.715704.89360HepG2BOP1
ATP2B4ENSG00000058668.10996.47830752.142500.405705.406104.53390HepG2CKAP4
ATP2B4ENSG00000058668.101004.65180614.744800.708504.415403.44430HepG2CNOT7
ATP2B4ENSG00000058668.101030.64590771.769900.417203.162902.43270HepG2CPSF6
ATP2B4ENSG00000058668.10575.55940427.817400.427902.649401.59340HepG2CSTF2
ATP2B4ENSG00000058668.101168.93180908.432600.363603.979003.23410HepG2CELF1
ATP2B4ENSG00000058668.10866.74390695.767200.316903.419602.50400HepG2DDX19B
ATP2B4ENSG00000058668.10630.57450802.26170-0.347402.336901.70670HepG2DDX21
ATP2B4ENSG00000058668.101014.60730784.915100.370203.014102.05910HepG2DDX24
ATP2B4ENSG00000058668.101168.31290680.995600.778607.286606.10040HepG2DDX55
ATP2B4ENSG00000058668.10892.26330719.740900.309902.720502.04820HepG2DKC1
ATP2B4ENSG00000058668.10618.99760859.50500-0.473603.347902.69980HepG2EIF2S1
ATP2B4ENSG00000058668.10421.26180604.10510-0.520103.220202.25040HepG2EIF3D
ATP2B4ENSG00000058668.101123.572001397.33430-0.314603.754303.07170HepG2ETF1
ATP2B4ENSG00000058668.101413.52970996.389200.504403.778402.89010HepG2FIP1L1
ATP2B4ENSG00000058668.101374.30480889.027900.628305.903604.94780HepG2G3BP1
ATP2B4ENSG00000058668.101012.98530776.634600.383202.562201.58760HepG2GNB2L1
ATP2B4ENSG00000058668.10665.46380874.84660-0.394702.329101.73840HepG2GPKOW
ATP2B4ENSG00000058668.101118.71680897.712300.317403.131602.14460HepG2HNRNPA2B1
ATP2B4ENSG00000058668.10599.04270840.39390-0.488403.939603.12280HepG2HNRNPC
ATP2B4ENSG00000058668.10690.46390900.29810-0.382802.568701.89450HepG2HNRNPK
ATP2B4ENSG00000058668.10497.43560687.52780-0.466903.597002.52320HepG2HNRNPM
ATP2B4ENSG00000058668.10821.76410687.696900.256902.296901.36580HepG2KIF1C
ATP2B4ENSG00000058668.10455.56860798.90950-0.810409.061206.96950HepG2LIN28B
ATP2B4ENSG00000058668.10499.50310958.73940-0.9406010.961409.68290HepG2MAGOH
ATP2B4ENSG00000058668.10716.39570968.61570-0.435204.523603.55050HepG2NOL12
ATP2B4ENSG00000058668.10692.78830878.76890-0.343101.958001.34200HepG2PABPC4
ATP2B4ENSG00000058668.10524.05230826.36070-0.657109.519308.10470HepG2PARN
ATP2B4ENSG00000058668.101236.85190944.802700.388505.134704.34850HepG2PCBP1
ATP2B4ENSG00000058668.10453.63560937.42650-1.047209.603407.81110HepG2PCBP2
ATP2B4ENSG00000058668.10345.49200744.61110-1.1078020.3477018.48860HepG2PPIL4
ATP2B4ENSG00000058668.10635.05630766.25730-0.270902.254301.68510HepG2PUS1
ATP2B4ENSG00000058668.101236.865301041.139200.248402.017701.47170HepG2QKI
ATP2B4ENSG00000058668.101347.67260944.939500.512105.997305.03950HepG2RBM25
ATP2B4ENSG00000058668.10594.67750996.56540-0.7449012.5569011.38900HepG2RECQL
ATP2B4ENSG00000058668.10537.20590846.16770-0.655506.087904.92580HepG2RPS2
ATP2B4ENSG00000058668.10473.48590863.75330-0.867309.862107.85190HepG2RPS5
ATP2B4ENSG00000058668.10498.96780826.36120-0.727807.338906.23820HepG2SF3B1
ATP2B4ENSG00000058668.10796.268501000.87620-0.329903.094902.47370HepG2SF3B4
ATP2B4ENSG00000058668.101032.40770886.539900.219701.932001.32760HepG2SLBP
ATP2B4ENSG00000058668.10695.31660867.01890-0.318403.437702.73330HepG2SMN1
ATP2B4ENSG00000058668.101766.250301319.084400.421107.295306.58780HepG2SRFBP1
ATP2B4ENSG00000058668.10588.72290889.19180-0.594903.947702.73000HepG2SRSF3
ATP2B4ENSG00000058668.101185.49860912.911300.376804.526103.75940HepG2SRSF5
ATP2B4ENSG00000058668.10480.68560811.24220-0.755009.925909.08220HepG2TIAL1
ATP2B4ENSG00000058668.10406.64310818.45050-1.0091020.7692019.40660HepG2TRIM56
ATP2B4ENSG00000058668.10166.05440400.46130-1.2700012.7089011.10740HepG2UCHL5
ATP2B4ENSG00000058668.10815.51520961.13920-0.237002.072001.45250HepG2UPF1
ATP2B4ENSG00000058668.10375.15270620.74750-0.726504.265403.00510HepG2UPF2
ATP2B4ENSG00000058668.101293.00960987.930900.388204.808803.46920HepG2UTP18
ATP2B4ENSG00000058668.10449.31430667.33310-0.570703.969603.10880HepG2XRN2
ATP2B4ENSG00000058668.10835.241801057.07180-0.339804.329403.68560HepG2ZNF622
ATP2B4ENSG00000058668.103332.788702256.690800.562404.841603.20310K562ABCF1
ATP2B4ENSG00000058668.101944.529902228.18230-0.196402.123601.61470K562AGGF1
ATP2B4ENSG00000058668.101994.105902448.35140-0.296102.541701.60680K562AKAP8
ATP2B4ENSG00000058668.101833.156802318.50400-0.338903.127002.43160K562AKAP8L
ATP2B4ENSG00000058668.101068.053101957.96290-0.874408.378407.44620K562AQR
ATP2B4ENSG00000058668.101874.457201383.015900.438605.818404.41180K562BCLAF1
ATP2B4ENSG00000058668.101852.742101455.325700.348202.653701.80020K562BOP1
ATP2B4ENSG00000058668.102240.607101571.870600.511304.774602.83430K562BUD13
ATP2B4ENSG00000058668.101419.26560907.055800.645807.356105.42340K562CCAR1
ATP2B4ENSG00000058668.102201.316201483.319500.569408.721506.10790K562CEBPZ
ATP2B4ENSG00000058668.102832.101502336.238500.277603.709302.41760K562CPEB4
ATP2B4ENSG00000058668.102196.563501547.365100.505306.917205.66990K562CPSF6
ATP2B4ENSG00000058668.101582.375001049.223200.592709.567507.44830K562CSTF2
ATP2B4ENSG00000058668.104646.953503447.719800.430506.661605.16420K562CELF1
ATP2B4ENSG00000058668.102244.452501704.989200.396505.160603.46900K562DDX21
ATP2B4ENSG00000058668.10914.248701212.95970-0.407903.760302.19400K562DDX27
ATP2B4ENSG00000058668.101302.339101672.40050-0.360803.676102.45380K562DDX3X
ATP2B4ENSG00000058668.101549.143302417.38250-0.6420016.3951014.92950K562DDX47
ATP2B4ENSG00000058668.101472.390301836.89170-0.319104.245202.72020K562EIF2S1
ATP2B4ENSG00000058668.103291.679901452.111101.1806049.0546046.79950K562EIF2S2
ATP2B4ENSG00000058668.10586.23560922.64360-0.654303.815102.61200K562EIF3A
ATP2B4ENSG00000058668.10808.265401292.44730-0.6772011.371709.73510K562EIF3G
ATP2B4ENSG00000058668.101321.867601747.20990-0.402503.907402.93620K562EIF4A3
ATP2B4ENSG00000058668.102196.409001440.856700.608109.640507.29400K562EXOSC5
ATP2B4ENSG00000058668.101761.993101192.246800.563404.608502.39590K562FAM120A
ATP2B4ENSG00000058668.102043.422901574.530600.376003.267802.33330K562FMR1
ATP2B4ENSG00000058668.101889.936801334.610200.501803.957002.84740K562FTO
ATP2B4ENSG00000058668.101243.569201817.01860-0.547109.948908.88540K562FXR1
ATP2B4ENSG00000058668.102080.035201342.490500.631606.900204.65540K562GEMIN5
ATP2B4ENSG00000058668.101552.728901934.93210-0.317502.932802.15610K562GRSF1
ATP2B4ENSG00000058668.101544.287801296.283400.252501.943401.43200K562HNRNPC
ATP2B4ENSG00000058668.101587.077001157.396700.455405.078003.46710K562HNRNPF
ATP2B4ENSG00000058668.101158.803102042.40150-0.8176011.746009.19300K562HNRNPK
ATP2B4ENSG00000058668.102481.954201705.850300.540904.342902.05820K562IGF2BP1
ATP2B4ENSG00000058668.102774.972301261.565201.1372016.1361013.72560K562KRR1
ATP2B4ENSG00000058668.101772.836702149.27700-0.277802.287501.51890K562MAGOH
ATP2B4ENSG00000058668.101461.831402144.85200-0.553107.958606.29200K562MATR3
ATP2B4ENSG00000058668.102096.633301442.033000.539907.234905.78040K562METAP2
ATP2B4ENSG00000058668.102073.378102988.62060-0.527506.814405.07190K562MSI2
ATP2B4ENSG00000058668.10939.965501320.04820-0.489904.248002.55390K562NONO
ATP2B4ENSG00000058668.103289.656101889.591900.7998041.8547039.55390K562NSUN2
ATP2B4ENSG00000058668.103271.921002155.951700.601704.081102.55720K562PABPC1
ATP2B4ENSG00000058668.101445.705702101.11290-0.539407.119804.88950K562PCBP1
ATP2B4ENSG00000058668.101155.092901912.24660-0.7273011.293709.23700K562PCBP2
ATP2B4ENSG00000058668.101165.461401832.76830-0.653107.138405.80100K562PCBP3
ATP2B4ENSG00000058668.103499.529602881.070200.280503.015401.51520K562PNPT1
ATP2B4ENSG00000058668.10854.141901405.84030-0.7189011.534109.95670K562POLR2G
ATP2B4ENSG00000058668.101376.152701841.45390-0.420203.872602.87790K562PPIG
ATP2B4ENSG00000058668.10707.575301303.03250-0.8809012.3246010.73360K562PRPF8
ATP2B4ENSG00000058668.101191.989202088.18900-0.8089016.2435014.70190K562PTBP1
ATP2B4ENSG00000058668.102275.574303059.21270-0.426905.104903.99950K562PUF60
ATP2B4ENSG00000058668.103906.201503188.223500.292904.040302.87570K562PUM2
ATP2B4ENSG00000058668.101823.226302299.46790-0.334802.406601.89260K562PUS1
ATP2B4ENSG00000058668.101517.227102002.09140-0.400103.845302.84310K562RBM22
ATP2B4ENSG00000058668.102011.832101624.200000.308702.876501.51450K562RBM25
ATP2B4ENSG00000058668.101583.291301060.109400.578607.040205.45450K562RCC2
ATP2B4ENSG00000058668.10710.584401327.08590-0.9012011.094409.42600K562RPS19
ATP2B4ENSG00000058668.101279.458701689.01640-0.400603.182602.09840K562RPS3
ATP2B4ENSG00000058668.10724.486701114.85020-0.621804.159802.21030K562SERBP1
ATP2B4ENSG00000058668.102655.897601864.578500.5102010.336708.83610K562SF3A3
ATP2B4ENSG00000058668.101790.433101405.152200.349502.308201.42810K562SF3B1
ATP2B4ENSG00000058668.101263.319801780.54060-0.495106.794105.41790K562SF3B4
ATP2B4ENSG00000058668.101515.67490999.080800.601206.796104.81790K562SLBP
ATP2B4ENSG00000058668.102170.109001910.304000.183902.199301.35620K562SRPK2
ATP2B4ENSG00000058668.101702.349802047.16920-0.266102.218501.57670K562SRSF1
ATP2B4ENSG00000058668.102208.671101521.715400.537409.768807.54770K562SRSF7
ATP2B4ENSG00000058668.102517.788901946.709100.371002.907301.62230K562STAU1
ATP2B4ENSG00000058668.101462.036902071.76580-0.502905.294504.29840K562TARDBP
ATP2B4ENSG00000058668.101620.581701149.936300.494903.863101.87770K562TFIP11
ATP2B4ENSG00000058668.102760.225502287.764300.270702.659401.41740K562TROVE2
ATP2B4ENSG00000058668.101398.722801993.07060-0.510904.293202.03380K562TUFM
ATP2B4ENSG00000058668.10792.276901335.06740-0.752809.321607.39580K562UCHL5
ATP2B4ENSG00000058668.102781.019602003.576200.4729010.600809.30810K562UPF1
ATP2B4ENSG00000058668.102502.303601714.393900.545508.119506.57750K562WDR3
ATP2B4ENSG00000058668.101524.925601782.79080-0.225402.701001.86390K562WDR43
ATP2B4ENSG00000058668.101319.768902320.30810-0.8140015.3036012.69980K562WRN
ATP2B4ENSG00000058668.10809.924501471.30660-0.861205.227902.88180K562XRCC6
ATP2B4ENSG00000058668.101928.199901359.753200.503804.789103.03910K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.





12 RBPs can affect the splicing of ATP2B4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.121000.006860.09405includedK562SF3B4
SEATP2B4ENSG00000058668.10chr1+203693008203693116203691605203691817203696522203696699-0.145000.003130.05152excludedK562SF3B4
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.080000.000000.00011includedK562AKAP8L
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.108000.000630.02177excludedK562AKAP8L
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.079000.004650.05013includedHepG2U2AF2
SEATP2B4ENSG00000058668.10chr1+203702350203702528203696522203696699203708673203713207-0.060000.000220.05428excludedK562METAP2
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.095000.000000.00000includedK562PUS1
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.127000.000130.00316excludedK562PUS1
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.204000.001380.06555includedHepG2PTBP1
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.115000.000340.01652includedK562HNRNPU
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.159000.001660.05541excludedK562HNRNPU
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.120000.000370.01251excludedK562RBM15
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.102000.003740.07481excludedK562AGGF1
SEATP2B4ENSG00000058668.10chr1+203702350203702528203696522203696699203708673203713207-0.055000.000790.07548excludedK562CPSF6
SEATP2B4ENSG00000058668.10chr1+203671171203671207203669925203670051203672779203672941-0.181000.001210.04705excludedK562SF3B1
SEATP2B4ENSG00000058668.10chr1+2036818342036820322036810872036812672036822922036823800.313000.000000.00010includedK562HNRNPK
SEATP2B4ENSG00000058668.10chr1+2037023502037025282036965222036966992037086732037132070.332000.000000.00021includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP2B4 is not avaliable on ENCORE database.