ATP2B4

General Information

Gene Name : ATP2B4
Gene ID : ENSG00000058668.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATP2B4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATP2B4	ENSG00000058668.14	6.32	5.70	6.01	ENCSR000AEF
HepG2	ATP2B4	ENSG00000058668.14	7.43	7.98	7.71	ENCSR985KAT
K562	ATP2B4	ENSG00000058668.14	17.66	19.28	18.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATP2B4 is not avaliable on ENCORE database.

Proteins bound to RNA

ATP2B4 RNA is bound by 18 proteins.

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eCLIP assay for ATP2B4 is not avaliable on ENCORE database.

18 proteins are bound to ATP2B4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	203698748	203698777	+	intron-Distal	5.35033	400.00000	HepG2	DKC1
chr1	203698777	203698829	+	intron-Distal	5.19078	400.00000	HepG2	DKC1
chr1	203698714	203698748	+	intron-Distal	5.23671	400.00000	HepG2	DKC1
chr1	203710449	203710608	+	3'-UTR	4.53351	23.45029	K562	UPF1
chr1	203710458	203710521	+	3'-UTR	4.10980	12.02194	K562	FAM120A
chr1	203671724	203671863	+	intron-Distal	5.76157	11.61334	K562	PTBP1
chr1	203709625	203709691	+	3'-UTR	5.55603	10.18755	K562	UPF1
chr1	203710521	203710592	+	3'-UTR	4.01752	8.93225	K562	FAM120A
chr1	203652199	203652353	+	5'-UTR,CDS	4.47102	8.41475	HepG2	BCLAF1
chr1	203712581	203712658	+	3'-UTR	3.95475	7.91182	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 56 entries

eCLIP assay for ATP2B4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATP2B4 is not available on ENCORE database.
115 RBPs can affect the levels of ATP2B4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.

115 RBPs can affect the gene expression of ATP2B4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATP2B4	ENSG00000058668.10	3291.67990	1452.11110	1.18060	49.05460	46.79950	K562	EIF2S2
ATP2B4	ENSG00000058668.10	3289.65610	1889.59190	0.79980	41.85470	39.55390	K562	NSUN2
ATP2B4	ENSG00000058668.10	406.64310	818.45050	-1.00910	20.76920	19.40660	HepG2	TRIM56
ATP2B4	ENSG00000058668.10	345.49200	744.61110	-1.10780	20.34770	18.48860	HepG2	PPIL4
ATP2B4	ENSG00000058668.10	1549.14330	2417.38250	-0.64200	16.39510	14.92950	K562	DDX47
ATP2B4	ENSG00000058668.10	1191.98920	2088.18900	-0.80890	16.24350	14.70190	K562	PTBP1
ATP2B4	ENSG00000058668.10	2774.97230	1261.56520	1.13720	16.13610	13.72560	K562	KRR1
ATP2B4	ENSG00000058668.10	1319.76890	2320.30810	-0.81400	15.30360	12.69980	K562	WRN
ATP2B4	ENSG00000058668.10	594.67750	996.56540	-0.74490	12.55690	11.38900	HepG2	RECQL
ATP2B4	ENSG00000058668.10	166.05440	400.46130	-1.27000	12.70890	11.10740	HepG2	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.

12 RBPs can affect the splicing of ATP2B4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	0.08000	0.00000	0.00011	included	K562	AKAP8L
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	0.09500	0.00000	0.00000	included	K562	PUS1
SE	ATP2B4	ENSG00000058668.10	chr1	+	203681834	203682032	203681087	203681267	203682292	203682380	0.31300	0.00000	0.00010	included	K562	HNRNPK
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	0.33200	0.00000	0.00021	included	K562	PTBP1
SE	ATP2B4	ENSG00000058668.10	chr1	+	203671171	203671207	203669925	203670051	203672779	203672941	-0.12700	0.00013	0.00316	excluded	K562	PUS1
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	-0.06000	0.00022	0.05428	excluded	K562	METAP2
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	0.11500	0.00034	0.01652	included	K562	HNRNPU
SE	ATP2B4	ENSG00000058668.10	chr1	+	203671171	203671207	203669925	203670051	203672779	203672941	-0.12000	0.00037	0.01251	excluded	K562	RBM15
SE	ATP2B4	ENSG00000058668.10	chr1	+	203671171	203671207	203669925	203670051	203672779	203672941	-0.10800	0.00063	0.02177	excluded	K562	AKAP8L
SE	ATP2B4	ENSG00000058668.10	chr1	+	203702350	203702528	203696522	203696699	203708673	203713207	-0.05500	0.00079	0.07548	excluded	K562	CPSF6

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATP2B4

General Information

Functions

Localization

Domains (AlphaFold: ATP2B4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATP2B4 is not avaliable on ENCORE database.

18 proteins are bound to ATP2B4 RNA:

eCLIP assay for ATP2B4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.

115 RBPs can affect the gene expression of ATP2B4 :

The Knockdown/knockout RNA-Seq assay for ATP2B4 is not available on ENCORE database.

12 RBPs can affect the splicing of ATP2B4 :

The Knockdown/knockout RNA-Seq assay for ATP2B4 is not avaliable on ENCORE database.