TMEM62

General Information

Gene Name       : TMEM62
Gene ID             : ENSG00000137842.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM62)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM62ENSG00000137842.612.0613.8312.95ENCSR000AEF
HepG2TMEM62ENSG00000137842.68.2012.5710.38ENCSR985KAT
K562TMEM62ENSG00000137842.610.389.279.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM62 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM62 RNA is bound by 7 proteins.  







eCLIP assay for TMEM62 is not avaliable on ENCORE database.





7 proteins are bound to TMEM62 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154344402843444121+3'-UTR,CDS3.220395.00751HepG2BCLAF1
chr154347700943477105+3'-UTR3.749263.07786HepG2UPF1
chr154346185343461914+CDS,intron-Proximal3.841464.83899HepG2PRPF8
chr154344685043446947+CDS,intron-Proximal4.408863.45799HepG2U2AF2
chr154344699843447073+CDS,intron-Proximal4.184883.31283K562PRPF8
chr154345289643452943+CDS3.145963.55800HepG2BCLAF1
chr154343231443432422+intron-Distal3.105123.81666HepG2SAFB
chr154344609743446231+intron-Distal4.102313.10582HepG2TIAL1
chr154343437643434421+intron-Distal3.467534.15543HepG2HLTF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM62 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM62 is not available on ENCORE database.

  • 96 RBPs can affect the levels of TMEM62.  








The Knockdown/knockout RNA-Seq assay for TMEM62 is not available on ENCORE database.





96 RBPs can affect the gene expression of TMEM62 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM62ENSG00000137842.2287.85370386.58550-0.425502.421401.84580HepG2ACO1
TMEM62ENSG00000137842.2563.32960804.90080-0.514803.135302.57370HepG2AKAP1
TMEM62ENSG00000137842.2402.20500603.64090-0.585803.859302.63360HepG2AKAP8
TMEM62ENSG00000137842.2553.85740388.317100.512204.800603.81420HepG2AKAP8L
TMEM62ENSG00000137842.2606.61320344.326700.816907.086604.97000HepG2ATP5C1
TMEM62ENSG00000137842.2614.06570453.601300.436904.112203.30560HepG2AUH
TMEM62ENSG00000137842.2647.77370268.735501.2692014.0712012.27610HepG2BCLAF1
TMEM62ENSG00000137842.2441.05770285.965400.625003.892502.43990HepG2BUD13
TMEM62ENSG00000137842.2487.12750324.938000.584004.580103.61730HepG2CALR
TMEM62ENSG00000137842.2256.84380622.87610-1.2781010.782909.30700HepG2CNOT7
TMEM62ENSG00000137842.2593.94460314.295600.918109.153807.27200HepG2CPSF7
TMEM62ENSG00000137842.2571.71460469.022100.285501.973601.41300HepG2CELF1
TMEM62ENSG00000137842.2652.39120504.261000.371503.694002.85810HepG2DAZAP1
TMEM62ENSG00000137842.2274.85100357.48940-0.379302.115101.37900HepG2DDX19B
TMEM62ENSG00000137842.2487.51650307.877800.663006.048104.39940HepG2DDX1
TMEM62ENSG00000137842.2202.43880320.57930-0.663204.098603.28850HepG2DDX21
TMEM62ENSG00000137842.2448.62230313.548300.516703.370102.35640HepG2DDX24
TMEM62ENSG00000137842.21323.57980771.072200.779408.787107.72550HepG2DDX3X
TMEM62ENSG00000137842.2389.49020230.257900.758203.402002.32040HepG2DDX59
TMEM62ENSG00000137842.2472.92580662.27720-0.485802.795502.17470HepG2DDX6
TMEM62ENSG00000137842.2470.85090291.174000.693305.676004.30390HepG2DHX30
TMEM62ENSG00000137842.21201.97270301.894001.9932035.1506032.97250HepG2DNAJC21
TMEM62ENSG00000137842.2439.25630295.068900.573902.989401.83180HepG2AGO1
TMEM62ENSG00000137842.21206.59740636.752200.9220011.6569010.49180HepG2EIF2S1
TMEM62ENSG00000137842.2405.64550685.09680-0.756104.951104.04760HepG2EIF4B
TMEM62ENSG00000137842.2884.57000543.771500.701903.708601.34580HepG2FASTKD1
TMEM62ENSG00000137842.2519.01620305.415000.764906.942605.27980HepG2FASTKD2
TMEM62ENSG00000137842.2743.66880413.906000.845309.799308.36840HepG2FUBP3
TMEM62ENSG00000137842.2547.77900375.666200.544002.782601.66360HepG2FUS
TMEM62ENSG00000137842.2347.20620709.90280-1.0318011.3391010.03500HepG2FXR1
TMEM62ENSG00000137842.2426.47260658.60760-0.627004.554303.70900HepG2G3BP1
TMEM62ENSG00000137842.2463.21130699.10670-0.593804.474403.32920HepG2G3BP2
TMEM62ENSG00000137842.2335.36820576.58450-0.781805.045803.53780HepG2GRSF1
TMEM62ENSG00000137842.2635.82740369.016700.7848011.557609.76260HepG2HDGF
TMEM62ENSG00000137842.2622.26670360.127700.788904.410802.62480HepG2HLTF
TMEM62ENSG00000137842.2449.64480339.014500.407302.101601.48740HepG2HNRNPC
TMEM62ENSG00000137842.2571.39420459.327100.314902.489801.84760HepG2HNRNPL
TMEM62ENSG00000137842.2453.06130219.373901.046209.380108.29870HepG2HNRNPLL
TMEM62ENSG00000137842.2381.79880265.919300.521702.283001.42000HepG2HNRNPM
TMEM62ENSG00000137842.2151.15190336.77350-1.1558013.0973011.85550HepG2HNRNPU
TMEM62ENSG00000137842.2379.49890657.49010-0.792905.167603.50620HepG2HSPD1
TMEM62ENSG00000137842.2457.75430353.324300.373502.795401.77480HepG2KIF1C
TMEM62ENSG00000137842.2518.49920710.15010-0.453802.790902.13340HepG2MAGOH
TMEM62ENSG00000137842.2594.73670311.876300.931209.408008.00080HepG2MSI2
TMEM62ENSG00000137842.2406.08410223.686500.860204.722003.43650HepG2MTPAP
TMEM62ENSG00000137842.2548.51550261.932001.0662012.173209.69630HepG2NAA15
TMEM62ENSG00000137842.2446.82170294.499300.601304.235002.46410HepG2NIP7
TMEM62ENSG00000137842.2365.29590622.97920-0.770105.131403.18120HepG2NKRF
TMEM62ENSG00000137842.2276.66780194.501600.508302.108001.45160HepG2NSUN2
TMEM62ENSG00000137842.21010.94750569.279500.828402.308001.51100HepG2PABPC1
TMEM62ENSG00000137842.21505.97490651.069301.2097020.1570018.25770HepG2PABPC4
TMEM62ENSG00000137842.2366.26790657.16980-0.8434010.785509.71400HepG2PCBP1
TMEM62ENSG00000137842.2655.44640367.583900.834308.636105.74660HepG2PES1
TMEM62ENSG00000137842.2572.69760312.526500.873706.798104.26120HepG2PHF6
TMEM62ENSG00000137842.2463.85570300.375600.626805.743004.71510HepG2PPIL4
TMEM62ENSG00000137842.2396.50710255.714900.632705.356404.31480HepG2PRPF4
TMEM62ENSG00000137842.2425.63200668.67500-0.651707.793406.96890HepG2PTBP1
TMEM62ENSG00000137842.2367.03890477.33420-0.379102.007501.48890HepG2PUF60
TMEM62ENSG00000137842.2749.05110506.347600.564805.888304.92350HepG2PUM2
TMEM62ENSG00000137842.2998.26890724.233900.462904.684603.90330HepG2QKI
TMEM62ENSG00000137842.2505.98060343.161600.560102.298801.65290HepG2RAVER1
TMEM62ENSG00000137842.2600.77440435.258000.464903.911703.32370HepG2RBM22
TMEM62ENSG00000137842.2368.10840744.18760-1.0155016.9418015.82230HepG2NELFE
TMEM62ENSG00000137842.2359.99360693.07960-0.9450014.9633013.70750HepG2RECQL
TMEM62ENSG00000137842.2341.50490625.37210-0.872806.711605.47350HepG2RPS3A
TMEM62ENSG00000137842.2563.79280299.913800.9105013.2616012.00920HepG2SAFB2
TMEM62ENSG00000137842.21181.66150588.899201.0046011.319408.85190HepG2SART3
TMEM62ENSG00000137842.2427.03600208.193901.036307.790006.23870HepG2SERBP1
TMEM62ENSG00000137842.2722.45990334.845701.109305.759603.56490HepG2SLTM
TMEM62ENSG00000137842.2273.62990349.75380-0.354102.032401.46790HepG2SMN1
TMEM62ENSG00000137842.2423.26600195.702901.112803.486101.97780HepG2SNRNP200
TMEM62ENSG00000137842.2432.27700726.68070-0.7494010.486209.69700HepG2SRSF1
TMEM62ENSG00000137842.2410.75880654.83410-0.672804.745503.11370HepG2SSRP1
TMEM62ENSG00000137842.2661.58310257.369301.362006.293904.52340HepG2STAU1
TMEM62ENSG00000137842.2886.13750320.697401.4662015.4783012.89590HepG2SUB1
TMEM62ENSG00000137842.2658.51910260.201401.3395020.2922018.00300HepG2SUPT6H
TMEM62ENSG00000137842.2498.23690653.12860-0.390503.197402.60080HepG2TAF15
TMEM62ENSG00000137842.2379.14220213.765400.826606.131805.11270HepG2TARDBP
TMEM62ENSG00000137842.2317.46900643.20460-1.018705.289703.85290HepG2TBRG4
TMEM62ENSG00000137842.21049.90600600.179000.8067012.4837010.73390HepG2TIA1
TMEM62ENSG00000137842.2196.02940327.25210-0.739305.492704.83670HepG2TIAL1
TMEM62ENSG00000137842.2445.91850330.162700.433503.351502.74410HepG2TRIM56
TMEM62ENSG00000137842.2791.13210493.656600.680305.189604.02220HepG2UBE2L3
TMEM62ENSG00000137842.21626.01390388.945302.0636053.3623051.15590HepG2UPF1
TMEM62ENSG00000137842.21126.54690560.142301.0079010.089408.04430HepG2XPO5
TMEM62ENSG00000137842.2332.49910252.362700.397802.304001.68430HepG2ZC3H8
TMEM62ENSG00000137842.21681.65210427.766301.97490116.42780114.29980HepG2ZNF622
TMEM62ENSG00000137842.2136.52690217.71460-0.673303.267802.66050K562AGGF1
TMEM62ENSG00000137842.2489.01160302.700700.691907.294806.30600K562DDX47
TMEM62ENSG00000137842.2270.50440188.761300.519002.628301.85060K562EIF3G
TMEM62ENSG00000137842.2226.54450151.888300.576702.477601.66840K562FMR1
TMEM62ENSG00000137842.2269.45830157.926400.770705.282404.48390K562FXR1
TMEM62ENSG00000137842.2236.20650152.573300.630402.659301.96940K562G3BP2
TMEM62ENSG00000137842.2290.05680161.158900.847805.331304.52800K562HNRNPC
TMEM62ENSG00000137842.2358.81450206.800300.794905.080303.77530K562HNRNPM
TMEM62ENSG00000137842.2159.53780254.87750-0.675904.009202.92580K562HNRNPU
TMEM62ENSG00000137842.2295.25010182.995700.690002.626001.43150K562PABPC1
TMEM62ENSG00000137842.2308.21760215.161000.518403.046302.35290K562PTBP1
TMEM62ENSG00000137842.2163.37890224.72690-0.460001.875701.41170K562PUS1
TMEM62ENSG00000137842.2160.85910218.90520-0.444501.942301.43000K562RBM15
TMEM62ENSG00000137842.2330.71470173.396000.931406.016604.80700K562RPS19
TMEM62ENSG00000137842.2270.22920174.298500.632503.627502.68840K562SYNCRIP
TMEM62ENSG00000137842.293.81010147.69930-0.654802.221201.38740K562TRIM56
TMEM62ENSG00000137842.2214.52810152.879700.488702.219101.50000K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM62 is not available on ENCORE database.





10 RBPs can affect the splicing of TMEM62 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM62ENSG00000137842.2chr15+434307714343081743427709434278474344095243441077-0.308000.004410.04193excludedK562AQR
SETMEM62ENSG00000137842.2chr15+434307714343081743427709434278474344095243441077-0.610000.000170.00394excludedK562PUS1
SETMEM62ENSG00000137842.2chr15+434386904343883243427709434278474344095243441077-0.646000.001060.05321excludedK562EFTUD2
SETMEM62ENSG00000137842.2chr15+4347080443470909434617904346187543473378434734970.308000.000110.01813includedHepG2LARP4
SETMEM62ENSG00000137842.2chr15+4347080443470909434617904346187543473378434734970.210000.000240.00779includedHepG2SRSF1
SETMEM62ENSG00000137842.2chr15+434386904343883243427709434278474344095243441077-0.323000.001530.08663excludedK562HNRNPUL1
SETMEM62ENSG00000137842.2chr15+4347080443470909434617904346187543473378434734970.180000.001850.07433includedHepG2SF3B4
SETMEM62ENSG00000137842.2chr15+434708044347090943461790434618754347337843473497-0.402000.003020.04851excludedK562U2AF2
A3SSTMEM62ENSG00000137842.2chr15+434412264344134943441305434413494344095243441077-0.309000.000080.05160shorterHepG2DROSHA
A3SSTMEM62ENSG00000137842.2chr15+434412264344134943441305434413494344095243441077-0.375000.000910.07309shorterK562SRSF1
MXETMEM62ENSG00000137842.2chr15+4346179043461875434733784347349743452591434529924347645743477287-0.241000.012220.074372includedK562AQR
MXETMEM62ENSG00000137842.2chr15+4346179043461875434708044347090943452591434529924347337843473497-0.248000.000940.014912includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM62 is not avaliable on ENCORE database.