TBC1D2B

General Information

Gene Name       : TBC1D2B
Gene ID             : ENSG00000167202.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBC1D2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBC1D2BENSG00000167202.1116.4615.4215.94ENCSR000AEF
HepG2TBC1D2BENSG00000167202.117.748.768.25ENCSR985KAT
K562TBC1D2BENSG00000167202.115.556.185.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBC1D2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBC1D2B RNA is bound by 11 proteins.  







eCLIP assay for TBC1D2B is not avaliable on ENCORE database.





11 proteins are bound to TBC1D2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157828971978289766-3'-UTR,intron-Distal3.413553.92922HepG2AKAP1
chr157828944578289511-3'-UTR,intron-Distal3.332173.97153HepG2UPF1
chr157828982678289888-3'-UTR,intron-Distal4.098873.08342HepG2AKAP1
chr157828973978289797-3'-UTR,intron-Distal3.475054.27354HepG2UPF1
chr157828972278289776-3'-UTR,intron-Distal3.567923.77931K562UPF1
chr157828938578289479-3'-UTR,intron-Distal3.326316.48866K562UPF1
chr157829023378290307-3'-UTR,intron-Distal3.710075.39448HepG2AKAP1
chr157828937978289445-3'-UTR,intron-Distal4.832175.35992HepG2UPF1
chr157828864078288747-3'-UTR,intron-Distal3.878664.87320K562UPF1
chr157828934978289430-3'-UTR,intron-Distal3.714894.26759HepG2AKAP1
chr157836993178370008-5'-UTR,CDS,intron-Distal,intron-Proximal4.004819.76063HepG2DDX3X
chr157836994278369959-CDS,intron-Distal5.630108.86104HepG2XRN2
chr157831771078317839-CDS,intron-Distal3.082404.74766HepG2BCLAF1
chr157831680578316882-CDS,intron-Distal,intron-Proximal3.526883.87469HepG2BCLAF1
chr157836996078369970-CDS,intron-Distal5.667109.43389HepG2XRN2
chr157831683878316926-CDS,intron-Distal,intron-Proximal4.701345.47569HepG2U2AF2
chr157836993478369942-CDS,intron-Distal5.591108.29107HepG2XRN2
chr157830517278305419-CDS,intron-Distal4.085133.14999HepG2GRWD1
chr157835988178359971-intron-Distal4.748825.42395HepG2HNRNPM
chr157828544178285503-intron-Distal3.522933.69530HepG2CSTF2T
chr157836163278361718-intron-Distal3.184903.11000HepG2HNRNPM
chr157835443078354496-intron-Distal4.008643.07980HepG2HNRNPM
chr157828530578285384-intron-Distal4.619524.61649HepG2CSTF2T
chr157829361178293679-intron-Distal3.995653.27946HepG2HNRNPM
chr157835977678359848-intron-Distal4.093613.62366HepG2HNRNPM
chr157829409078294156-intron-Distal,intron-Proximal5.361687.36555K562SF3B4
chr157829340178293505-intron-Distal3.951663.48722HepG2PRPF4
chr157828667378286713-intron-Distal3.760603.19526HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBC1D2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBC1D2B is not available on ENCORE database.

  • 110 RBPs can affect the levels of TBC1D2B.  








The Knockdown/knockout RNA-Seq assay for TBC1D2B is not available on ENCORE database.





110 RBPs can affect the gene expression of TBC1D2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBC1D2BENSG00000167202.71096.98460670.485500.710208.624806.85420HepG2AATF
TBC1D2BENSG00000167202.7823.505801060.73640-0.365202.289401.42840HepG2ABCF1
TBC1D2BENSG00000167202.72388.73370968.872401.3018065.4400063.47040HepG2ACO1
TBC1D2BENSG00000167202.7613.45250856.93370-0.482203.730802.59390HepG2ADAR
TBC1D2BENSG00000167202.71390.603401032.220500.429903.314302.45420HepG2ASCC1
TBC1D2BENSG00000167202.72154.394501393.896500.6281015.4260014.03570HepG2AUH
TBC1D2BENSG00000167202.7619.87040820.85930-0.405202.224201.38790HepG2BCCIP
TBC1D2BENSG00000167202.71013.66870794.599800.351202.487101.32140HepG2BUD13
TBC1D2BENSG00000167202.7612.46850755.20600-0.302201.966001.30730HepG2CALR
TBC1D2BENSG00000167202.7672.51200980.68790-0.544204.558803.57940HepG2CIRBP
TBC1D2BENSG00000167202.71943.666501113.617800.803406.148105.00840HepG2CNOT7
TBC1D2BENSG00000167202.71136.53420873.378700.379903.009001.85900HepG2CPSF7
TBC1D2BENSG00000167202.7572.02380878.77550-0.619408.180506.44540HepG2YBX3
TBC1D2BENSG00000167202.72498.870001071.590201.2214047.8788045.88180HepG2CELF1
TBC1D2BENSG00000167202.7757.67770896.11290-0.242102.220401.46720HepG2DDX19B
TBC1D2BENSG00000167202.7550.21070723.90860-0.395802.940801.99570HepG2DDX24
TBC1D2BENSG00000167202.71299.05550807.081800.686606.052004.96150HepG2DDX55
TBC1D2BENSG00000167202.71220.86240770.974400.663003.667502.54490HepG2DDX59
TBC1D2BENSG00000167202.7586.54950849.46260-0.534304.449603.18110HepG2DDX5
TBC1D2BENSG00000167202.7582.05150926.97350-0.6714010.368109.22680HepG2DKC1
TBC1D2BENSG00000167202.7584.29410763.48330-0.385902.338801.48910HepG2EEF2
TBC1D2BENSG00000167202.7481.80290636.41500-0.401502.442501.40200HepG2EFTUD2
TBC1D2BENSG00000167202.7942.48740681.211300.468302.769901.66280HepG2AGO1
TBC1D2BENSG00000167202.7553.376501090.51110-0.9787011.3355010.07050HepG2EIF4A3
TBC1D2BENSG00000167202.7930.548701136.75500-0.288802.946702.08720HepG2EIF4G1
TBC1D2BENSG00000167202.7600.72650918.76300-0.613006.104904.54930HepG2ESF1
TBC1D2BENSG00000167202.71223.917901600.34230-0.386905.241304.46100HepG2ETF1
TBC1D2BENSG00000167202.7547.38110946.84780-0.7906010.879209.25510HepG2EWSR1
TBC1D2BENSG00000167202.7889.62700704.980100.335502.380201.31620HepG2FASTKD2
TBC1D2BENSG00000167202.72650.699001071.055501.3072023.6705021.83250HepG2FIP1L1
TBC1D2BENSG00000167202.7380.56560680.10850-0.837603.301802.18840HepG2FTO
TBC1D2BENSG00000167202.7381.96440683.87540-0.840309.688208.26660HepG2FUBP3
TBC1D2BENSG00000167202.71257.31340849.261400.566003.693602.40760HepG2FUS
TBC1D2BENSG00000167202.7688.739001083.75890-0.654006.466005.09610HepG2G3BP2
TBC1D2BENSG00000167202.71340.77370878.698500.609505.801204.31180HepG2GNB2L1
TBC1D2BENSG00000167202.7528.03110769.59350-0.543503.709102.97720HepG2GPKOW
TBC1D2BENSG00000167202.71332.64600942.576100.499503.105701.65790HepG2HNRNPA0
TBC1D2BENSG00000167202.7366.89470871.15580-1.2476019.9204018.45160HepG2HNRNPA1
TBC1D2BENSG00000167202.71413.716201058.983800.416705.497604.25730HepG2HNRNPA2B1
TBC1D2BENSG00000167202.7685.60110969.00110-0.499104.360803.50500HepG2HNRNPC
TBC1D2BENSG00000167202.71287.365801049.748600.294303.495502.74570HepG2HNRNPL
TBC1D2BENSG00000167202.7356.17680734.43940-1.0440012.0899010.89110HepG2HNRNPLL
TBC1D2BENSG00000167202.7536.96640738.88890-0.460503.924202.81100HepG2HNRNPM
TBC1D2BENSG00000167202.7808.19130983.25820-0.282903.281102.48870HepG2ILF2
TBC1D2BENSG00000167202.7889.933801220.58340-0.455802.820201.98300HepG2LARP4
TBC1D2BENSG00000167202.7663.36910903.86860-0.446303.657302.25660HepG2LIN28B
TBC1D2BENSG00000167202.7876.743001100.83170-0.328401.925001.37230HepG2MAGOH
TBC1D2BENSG00000167202.71088.82780648.587700.747304.915203.53840HepG2METAP2
TBC1D2BENSG00000167202.71366.75030866.693900.657108.470707.12530HepG2MSI2
TBC1D2BENSG00000167202.71591.612001133.019000.490203.996603.24020HepG2NCBP2
TBC1D2BENSG00000167202.71723.731901142.666700.593009.452408.06910HepG2NOL12
TBC1D2BENSG00000167202.7398.51660651.23790-0.708506.230305.13540HepG2NSUN2
TBC1D2BENSG00000167202.71592.421701018.130000.645203.741502.69700HepG2PABPC1
TBC1D2BENSG00000167202.71954.73190998.867700.968508.375405.86130HepG2PNPT1
TBC1D2BENSG00000167202.7815.038601209.40390-0.569404.540402.21580HepG2PPIG
TBC1D2BENSG00000167202.7698.44430858.55720-0.297802.418301.72580HepG2PPIL4
TBC1D2BENSG00000167202.7610.70750808.28270-0.404404.142903.21660HepG2PRPF4
TBC1D2BENSG00000167202.71199.184801004.127300.256002.332101.82230HepG2PTBP1
TBC1D2BENSG00000167202.71865.517701157.823500.6881020.5162019.20380HepG2PUM1
TBC1D2BENSG00000167202.7629.15600986.87370-0.6494011.4695010.36220HepG2PUS1
TBC1D2BENSG00000167202.7863.422501087.56930-0.333003.037002.38800HepG2QKI
TBC1D2BENSG00000167202.71731.786401094.059400.6625011.127209.58690HepG2RBM15
TBC1D2BENSG00000167202.7633.70130987.01080-0.639307.659206.58580HepG2RBM25
TBC1D2BENSG00000167202.7737.816201038.18690-0.492704.350303.08760HepG2RBM27
TBC1D2BENSG00000167202.7487.26330843.05510-0.790907.234105.53160HepG2RCC2
TBC1D2BENSG00000167202.7867.932701117.52640-0.364704.000403.37160HepG2NELFE
TBC1D2BENSG00000167202.7728.605201040.77110-0.514407.163806.24070HepG2RECQL
TBC1D2BENSG00000167202.71755.733801093.208800.683409.374508.23770HepG2RPLP0
TBC1D2BENSG00000167202.7538.64680762.18410-0.500802.496101.59730HepG2RPS10
TBC1D2BENSG00000167202.7985.02340615.841400.677505.656504.56980HepG2RRP9
TBC1D2BENSG00000167202.7545.58940857.23220-0.6519010.454709.32660HepG2SAFB2
TBC1D2BENSG00000167202.7692.40460895.39940-0.370902.038901.45890HepG2SF3A3
TBC1D2BENSG00000167202.7382.72860726.93650-0.9255010.495209.20410HepG2SF3B1
TBC1D2BENSG00000167202.7887.032001045.48890-0.237102.000401.48440HepG2SF3B4
TBC1D2BENSG00000167202.7768.113401045.75890-0.445206.593305.58370HepG2SLBP
TBC1D2BENSG00000167202.7412.93090808.84910-0.970007.280906.00890HepG2SNRNP70
TBC1D2BENSG00000167202.71936.757801510.781300.358203.885703.32210HepG2SRFBP1
TBC1D2BENSG00000167202.7570.56460782.22430-0.455202.394901.47120HepG2SRSF3
TBC1D2BENSG00000167202.71300.57930997.043200.383305.098504.19870HepG2SRSF7
TBC1D2BENSG00000167202.71743.76860887.758500.9739032.2582030.77840HepG2SRSF9
TBC1D2BENSG00000167202.7910.255101311.73990-0.527109.018408.19600HepG2SSB
TBC1D2BENSG00000167202.71868.497501224.768800.6093014.8001013.54650HepG2SUCLG1
TBC1D2BENSG00000167202.7584.88630723.10080-0.306002.163401.32660HepG2SUPT6H
TBC1D2BENSG00000167202.7479.20340803.42750-0.745506.316705.35580HepG2SUPV3L1
TBC1D2BENSG00000167202.7798.23240980.77650-0.297102.207301.69650HepG2TAF15
TBC1D2BENSG00000167202.7530.15640715.91260-0.433402.927402.18430HepG2TARDBP
TBC1D2BENSG00000167202.7528.549601218.64250-1.205207.999706.28420HepG2TBRG4
TBC1D2BENSG00000167202.7838.91940538.503300.639504.691603.44150HepG2TFIP11
TBC1D2BENSG00000167202.7710.29080935.33560-0.397103.613803.05840HepG2TIAL1
TBC1D2BENSG00000167202.7530.19560943.70200-0.8318016.3038015.09020HepG2TRIM56
TBC1D2BENSG00000167202.7620.04530916.13390-0.563204.812103.99680HepG2U2AF1
TBC1D2BENSG00000167202.71901.758101127.804600.753703.125602.23590HepG2UBE2L3
TBC1D2BENSG00000167202.7712.05880474.602600.585204.586803.60570HepG2UCHL5
TBC1D2BENSG00000167202.71004.83710816.235700.299802.721001.68050HepG2UTP18
TBC1D2BENSG00000167202.7987.22590766.657900.364702.476301.90310HepG2UTP3
TBC1D2BENSG00000167202.7402.21230790.88660-0.9755010.790809.37340HepG2XRN2
TBC1D2BENSG00000167202.7686.87480873.34000-0.346502.287301.77580HepG2ZNF622
TBC1D2BENSG00000167202.7280.93990405.56420-0.529703.050701.80410K562AARS
TBC1D2BENSG00000167202.7840.45870650.511300.369503.384202.15410K562CPEB4
TBC1D2BENSG00000167202.7541.10580393.364800.459903.231202.38180K562CPSF6
TBC1D2BENSG00000167202.7687.22600540.746000.345702.750102.03290K562EIF2S2
TBC1D2BENSG00000167202.7368.11430596.10460-0.695407.745806.80140K562FXR1
TBC1D2BENSG00000167202.7572.44920393.889100.539303.385401.79010K562GEMIN5
TBC1D2BENSG00000167202.71001.51950641.602900.642302.612601.43940K562HNRNPA2B1
TBC1D2BENSG00000167202.7771.56310608.242900.343002.404801.42730K562HNRNPL
TBC1D2BENSG00000167202.7742.84530551.805400.428802.363801.43630K562IGF2BP2
TBC1D2BENSG00000167202.7402.95420578.77650-0.522404.335903.15680K562MATR3
TBC1D2BENSG00000167202.7785.64370595.596300.399404.565303.63590K562NSUN2
TBC1D2BENSG00000167202.7357.00330516.01570-0.531503.650302.52840K562PCBP2
TBC1D2BENSG00000167202.7528.45460397.780200.409702.382601.54990K562PSIP1
TBC1D2BENSG00000167202.7310.21760563.45550-0.8610010.160908.94300K562PTBP1
TBC1D2BENSG00000167202.7828.711601077.98570-0.379403.100202.23820K562PUF60
TBC1D2BENSG00000167202.7420.04710540.29950-0.363202.127501.39450K562RBM22
TBC1D2BENSG00000167202.7741.90140587.729300.336002.855102.02960K562SF3A3
TBC1D2BENSG00000167202.7733.05610602.143900.283702.354001.48160K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBC1D2B is not available on ENCORE database.





4 RBPs can affect the splicing of TBC1D2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBC1D2BENSG00000167202.7chr15-7829084478291242782905857829069778293960782940080.121000.003790.07413includedK562RBM15
A3SSTBC1D2BENSG00000167202.7chr15-7830888778309135783088877830908178310188783102990.112000.003680.02204longerK562AQR
MXETBC1D2BENSG00000167202.7chr15-78337241783374107834637578346529783223487832251278369634783699940.169000.021070.096291includedHepG2U2AF2
MXETBC1D2BENSG00000167202.7chr15-78310188783102997831649778316881783088877830908178317600783178390.234000.001860.084001includedHepG2DDX3X

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBC1D2B is not avaliable on ENCORE database.