SNX10

General Information

Gene Name       : SNX10
Gene ID             : ENSG00000086300.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX10ENSG00000086300.1523.4520.0821.77ENCSR000AEF
HepG2SNX10ENSG00000086300.1512.7725.6419.20ENCSR985KAT
K562SNX10ENSG00000086300.157.087.757.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX10 RNA is bound by 12 proteins.  







eCLIP assay for SNX10 is not avaliable on ENCORE database.





12 proteins are bound to SNX10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr72638603926386068+3'-UTR,CDS,intron-Proximal4.971194.11950K562DDX3X
chr72641237526412461+3'-UTR3.281583.90824K562YBX3
chr72641321726413306+3'-UTR3.938516.04577K562FAM120A
chr72641232326412406+3'-UTR3.267333.37563HepG2FUBP3
chr72633164926331704+5'-UTR3.575824.00968HepG2DDX3X
chr72640468626404768+5'-UTR,CDS,intron-Proximal3.683305.35682HepG2GRWD1
chr72633154826331640+5'-UTR4.087007.77439HepG2DDX3X
chr72633158126331740+5'-UTR,intron-Proximal3.536904.77429HepG2NCBP2
chr72640059426400671+5'-UTR,CDS,intron-Proximal4.0507610.98590HepG2BCLAF1
chr72640059226400678+5'-UTR,CDS,intron-Proximal3.418996.88650HepG2GRWD1
chr72641210626412156+CDS,intron-Proximal3.445385.15776HepG2BCLAF1
chr72637357526373679+intron-Distal3.587283.64762HepG2QKI
chr72634313526343327+intron-Distal4.237446.29905HepG2MATR3
chr72634296026343067+intron-Distal4.133214.61322HepG2MATR3
chr72634369226343755+intron-Distal3.368815.82512HepG2SUGP2
chr72634477826344870+intron-Distal5.071646.79054HepG2PCBP2
chr72633210326332200+intron-Distal4.161953.90256HepG2PRPF4
chr72634317526343222+intron-Distal3.058864.88763HepG2SUGP2
chr72634337426343455+intron-Distal3.999736.26907HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX10 is not available on ENCORE database.

  • 120 RBPs can affect the levels of SNX10.  








The Knockdown/knockout RNA-Seq assay for SNX10 is not available on ENCORE database.





120 RBPs can affect the gene expression of SNX10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX10ENSG00000086300.11620.84120955.81240-0.622505.275804.01980HepG2ABCF1
SNX10ENSG00000086300.11766.227201110.40200-0.535208.865407.90350HepG2ACO1
SNX10ENSG00000086300.11527.18790808.09060-0.616205.531704.18780HepG2ADAR
SNX10ENSG00000086300.111174.193102457.48080-1.0655015.5206014.36550HepG2AKAP1
SNX10ENSG00000086300.11947.665001115.70340-0.235502.068701.39200HepG2AKAP8L
SNX10ENSG00000086300.111282.11890862.581500.571706.075104.09000HepG2ATP5C1
SNX10ENSG00000086300.111954.684901422.912200.458004.874404.00480HepG2AUH
SNX10ENSG00000086300.11425.04430874.06360-1.0401010.577508.68400HepG2BCCIP
SNX10ENSG00000086300.11369.13060600.24230-0.701402.722202.12810HepG2BOP1
SNX10ENSG00000086300.11701.398901435.78280-1.033502.747401.77550HepG2CCAR1
SNX10ENSG00000086300.111055.679201931.83210-0.8718012.7193011.19430HepG2CIRBP
SNX10ENSG00000086300.11702.711501110.26220-0.6599013.5381012.29720HepG2CKAP4
SNX10ENSG00000086300.111744.50450916.268300.928905.665704.56910HepG2CNOT7
SNX10ENSG00000086300.11658.81960828.68670-0.330902.699001.69530HepG2YBX3
SNX10ENSG00000086300.11395.03300539.95380-0.450902.559101.52090HepG2CSTF2
SNX10ENSG00000086300.11916.13170632.057400.535403.333801.79150HepG2CSTF2T
SNX10ENSG00000086300.11974.379401278.84300-0.392303.761703.03480HepG2CELF1
SNX10ENSG00000086300.111678.480601375.401400.287202.499901.78930HepG2DAZAP1
SNX10ENSG00000086300.11778.810001027.00940-0.399105.491204.36790HepG2DDX19B
SNX10ENSG00000086300.11283.87110680.78390-1.2620018.6319017.06590HepG2DDX21
SNX10ENSG00000086300.11567.18050859.36760-0.599504.050903.13450HepG2DDX55
SNX10ENSG00000086300.11894.83220625.786000.515802.286401.40060HepG2DDX59
SNX10ENSG00000086300.111194.16850931.416800.358402.621601.63420HepG2DDX5
SNX10ENSG00000086300.111293.451402022.19870-0.644706.331605.42660HepG2DDX6
SNX10ENSG00000086300.11776.438401062.38000-0.452403.024802.32070HepG2DKC1
SNX10ENSG00000086300.111029.08200813.707700.338703.259302.50050HepG2DNAJC21
SNX10ENSG00000086300.11647.10960806.52330-0.317703.274302.57530HepG2DNAJC2
SNX10ENSG00000086300.11656.78210856.18300-0.382502.260901.42540HepG2EEF2
SNX10ENSG00000086300.11925.74360627.046300.561902.349901.33540HepG2AGO1
SNX10ENSG00000086300.11918.648001943.99690-1.0814017.8587016.44140HepG2EIF2S1
SNX10ENSG00000086300.11564.15710725.09260-0.362102.475101.37190HepG2EIF2S2
SNX10ENSG00000086300.11482.48680643.00440-0.414303.067401.93490HepG2EIF3G
SNX10ENSG00000086300.11884.088302148.34910-1.2810021.6936019.94750HepG2EIF4A3
SNX10ENSG00000086300.11848.954402091.71180-1.3009017.6864016.04990HepG2EIF4B
SNX10ENSG00000086300.111161.208401633.56020-0.492404.153303.44250HepG2ETF1
SNX10ENSG00000086300.11848.729301085.15120-0.354502.908202.05360HepG2EWSR1
SNX10ENSG00000086300.11585.36440965.14840-0.721406.593305.45700HepG2FIP1L1
SNX10ENSG00000086300.111039.69620715.317800.539404.631303.02180HepG2FKBP4
SNX10ENSG00000086300.11668.26470915.50940-0.454203.433002.56050HepG2FUBP3
SNX10ENSG00000086300.11927.253102167.58220-1.2251023.3996021.60490HepG2FXR1
SNX10ENSG00000086300.11802.028002010.75660-1.3260024.3639022.47370HepG2G3BP1
SNX10ENSG00000086300.111186.286602134.66770-0.8476012.4932010.60100HepG2G3BP2
SNX10ENSG00000086300.11412.39940618.85560-0.585604.395703.25700HepG2GEMIN5
SNX10ENSG00000086300.11437.68680848.04040-0.954204.060002.71300HepG2GRSF1
SNX10ENSG00000086300.11480.94700821.50320-0.772408.883507.82170HepG2HNRNPA1
SNX10ENSG00000086300.11521.10080913.77070-0.810309.686708.45610HepG2HNRNPC
SNX10ENSG00000086300.11849.503102036.05850-1.2611027.2932025.33470HepG2HNRNPK
SNX10ENSG00000086300.11851.039301252.98590-0.558105.561304.63460HepG2HNRNPL
SNX10ENSG00000086300.11613.83540907.72940-0.564408.213607.20950HepG2HNRNPU
SNX10ENSG00000086300.11739.178102043.89240-1.4673032.1127030.12360HepG2IGF2BP2
SNX10ENSG00000086300.11659.121601918.09580-1.541109.692007.94160HepG2IGF2BP3
SNX10ENSG00000086300.11595.17010927.21550-0.6396011.8435010.44770HepG2ILF2
SNX10ENSG00000086300.111547.271402055.80230-0.410002.560701.60250HepG2KHSRP
SNX10ENSG00000086300.11808.211201514.53560-0.906102.276701.53010HepG2LARP4
SNX10ENSG00000086300.111076.660902168.33890-1.0100016.0389014.52250HepG2MAGOH
SNX10ENSG00000086300.11761.608002180.47670-1.5175029.7813027.89000HepG2MATR3
SNX10ENSG00000086300.11450.36230727.44290-0.691703.501802.32230HepG2METAP2
SNX10ENSG00000086300.11654.827902231.84080-1.7690042.2226039.96400HepG2NCBP2
SNX10ENSG00000086300.11911.606201363.82750-0.581206.001704.87980HepG2NOL12
SNX10ENSG00000086300.11294.19650789.02980-1.4233011.278408.99790HepG2NONO
SNX10ENSG00000086300.11716.85550528.611500.439402.015901.37280HepG2NSUN2
SNX10ENSG00000086300.11290.44190519.62400-0.839204.539802.51310HepG2PA2G4
SNX10ENSG00000086300.111133.761001987.60710-0.809909.263407.96100HepG2PABPC4
SNX10ENSG00000086300.11460.12660898.49630-0.9655019.3555017.50190HepG2PARN
SNX10ENSG00000086300.11760.374601790.59490-1.2357046.3401044.42350HepG2PCBP1
SNX10ENSG00000086300.11326.30790574.78390-0.816809.185407.08830HepG2PKM
SNX10ENSG00000086300.11573.66290809.62210-0.497005.474604.46860HepG2PPIL4
SNX10ENSG00000086300.11500.29100956.77660-0.935407.633305.70090HepG2PRPF6
SNX10ENSG00000086300.11973.560301821.97910-0.9042026.3306024.97560HepG2PTBP1
SNX10ENSG00000086300.11922.561901381.81140-0.582806.983206.12980HepG2PUM1
SNX10ENSG00000086300.11707.506101131.03130-0.6768013.5534012.36710HepG2PUS1
SNX10ENSG00000086300.111111.473101973.28710-0.8281018.7783017.35330HepG2QKI
SNX10ENSG00000086300.11836.028701365.38190-0.707707.059706.32170HepG2RBM22
SNX10ENSG00000086300.111249.799401790.87030-0.519006.709805.70020HepG2RBM25
SNX10ENSG00000086300.11549.984501006.36650-0.871702.924901.90340HepG2RBM27
SNX10ENSG00000086300.11861.150502027.70290-1.2355046.5487044.94900HepG2NELFE
SNX10ENSG00000086300.11766.265801888.50230-1.3013050.7588048.80370HepG2RECQL
SNX10ENSG00000086300.11209.08260676.29720-1.6936031.7918030.09110HepG2RPS19
SNX10ENSG00000086300.11493.02230928.24400-0.912903.341502.46200HepG2RPS2
SNX10ENSG00000086300.11329.15150655.88780-0.994709.010007.70180HepG2RRP9
SNX10ENSG00000086300.11456.32420808.37300-0.8250011.8579010.66810HepG2SAFB2
SNX10ENSG00000086300.11339.26020678.79310-1.0006011.225809.39020HepG2SERBP1
SNX10ENSG00000086300.11745.183101158.82420-0.637004.236703.39240HepG2SF3A3
SNX10ENSG00000086300.11874.245301896.94800-1.1176038.8732037.14070HepG2SF3B4
SNX10ENSG00000086300.11475.76920942.69920-0.9865024.8015023.18640HepG2SMN1
SNX10ENSG00000086300.111077.785201979.98980-0.8774027.5760026.42450HepG2SRSF1
SNX10ENSG00000086300.11419.46100634.91940-0.598002.224101.33850HepG2SRSF3
SNX10ENSG00000086300.11745.048501285.20970-0.7866010.607509.48780HepG2SRSF5
SNX10ENSG00000086300.111065.869801339.07870-0.329202.061101.60220HepG2SSB
SNX10ENSG00000086300.11523.06250799.37950-0.611902.607001.54340HepG2STIP1
SNX10ENSG00000086300.111583.99490820.811200.948308.561406.52720HepG2SUB1
SNX10ENSG00000086300.11979.758101461.74790-0.577205.204604.39760HepG2SUCLG1
SNX10ENSG00000086300.11570.34360855.51660-0.585003.814003.03900HepG2SUPV3L1
SNX10ENSG00000086300.111077.383301779.65510-0.7241015.7010014.52730HepG2TAF15
SNX10ENSG00000086300.11581.317801039.93240-0.839102.814001.73790HepG2TBRG4
SNX10ENSG00000086300.11349.70790573.44070-0.713504.841103.57610HepG2TFIP11
SNX10ENSG00000086300.11985.469401635.29980-0.7307012.4471010.70120HepG2TIA1
SNX10ENSG00000086300.11505.95850882.02760-0.8018011.8626010.95410HepG2TIAL1
SNX10ENSG00000086300.11492.12530889.91350-0.8546016.3760015.15790HepG2TRIM56
SNX10ENSG00000086300.11544.46600825.64010-0.600704.997404.16700HepG2U2AF1
SNX10ENSG00000086300.11449.97040986.02200-1.131802.921201.90340HepG2U2AF2
SNX10ENSG00000086300.11186.72700505.40000-1.4365017.4214015.54480HepG2UCHL5
SNX10ENSG00000086300.11821.407001027.69810-0.323203.518502.74560HepG2UPF1
SNX10ENSG00000086300.11490.45110783.46870-0.675803.754002.56890HepG2UPF2
SNX10ENSG00000086300.11442.28980992.20490-1.1656028.0238026.41960HepG2UTP3
SNX10ENSG00000086300.11311.13390842.16140-1.4366020.9341019.02630HepG2XRN2
SNX10ENSG00000086300.11375.02700470.20270-0.326302.169001.56370HepG2ZC3H8
SNX10ENSG00000086300.111283.599401130.273800.183401.780601.31580HepG2ZNF622
SNX10ENSG00000086300.11528.13160346.186800.609205.831905.05630K562AGGF1
SNX10ENSG00000086300.11513.48060360.221800.511303.542602.80020K562AKAP8L
SNX10ENSG00000086300.11334.48770547.69830-0.711405.376804.60540K562AQR
SNX10ENSG00000086300.11480.23900377.957000.345402.166601.36580K562ATP5C1
SNX10ENSG00000086300.11284.92190458.35740-0.685906.300105.37380K562DDX47
SNX10ENSG00000086300.11371.79600264.292800.492303.215902.44990K562EIF2S2
SNX10ENSG00000086300.11161.12360333.96490-1.051503.454802.57100K562EIF3G
SNX10ENSG00000086300.11243.80600394.80900-0.695405.114703.99710K562EIF4A3
SNX10ENSG00000086300.11254.76000355.55470-0.480902.710101.57450K562EIF4B
SNX10ENSG00000086300.11429.97280556.17340-0.371302.500301.60410K562EIF4G2
SNX10ENSG00000086300.11355.37480247.178300.523702.644401.54710K562FKBP4
SNX10ENSG00000086300.11230.36710410.58610-0.833807.963107.00430K562FXR1
SNX10ENSG00000086300.11157.75920284.60720-0.851205.377404.57080K562HNRNPC
SNX10ENSG00000086300.11253.26590414.25920-0.709904.072402.76200K562HNRNPL
SNX10ENSG00000086300.11372.77380529.28100-0.505703.731402.30280K562IGF2BP3
SNX10ENSG00000086300.11578.91240382.289800.598604.789203.64960K562KIF1C
SNX10ENSG00000086300.11377.21650545.98050-0.533504.150403.00140K562MATR3
SNX10ENSG00000086300.11641.75710428.260500.583405.044303.74310K562MBNL1
SNX10ENSG00000086300.11147.26200293.70870-0.996008.594307.24260K562MTPAP
SNX10ENSG00000086300.11543.91050300.179200.857406.012704.52710K562NAA15
SNX10ENSG00000086300.11662.13520357.250200.890108.851207.92790K562PUS1
SNX10ENSG00000086300.11474.55370348.079000.447103.058502.44040K562RBM15
SNX10ENSG00000086300.11404.37690536.41570-0.407702.402201.39760K562NELFE
SNX10ENSG00000086300.11149.67070259.21530-0.792404.042301.82790K562SAFB2
SNX10ENSG00000086300.11243.05690412.44590-0.762903.682802.69200K562SF3B4
SNX10ENSG00000086300.11142.46050220.74030-0.631802.710201.69970K562SRFBP1
SNX10ENSG00000086300.11143.84550329.90710-1.1975012.7840010.96900K562SRPK2
SNX10ENSG00000086300.11332.00950527.33980-0.667505.355104.35310K562TARDBP
SNX10ENSG00000086300.11294.15430508.66080-0.790107.535006.08160K562TIA1
SNX10ENSG00000086300.11156.35870245.44330-0.650502.906101.94570K562TIAL1
SNX10ENSG00000086300.11165.26290260.78900-0.658103.130602.11150K562TRIM56
SNX10ENSG00000086300.11150.14750242.66450-0.692603.443302.04440K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX10 is not available on ENCORE database.





3 RBPs can affect the splicing of SNX10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX10ENSG00000086300.11chr7+2639662626396747263860392638608626400594264006510.266000.002890.09712includedHepG2SFPQ
SESNX10ENSG00000086300.11chr7+263966262639674726386039263860862640059426400651-0.253000.000900.02322excludedHepG2SRSF1
A5SSSNX10ENSG00000086300.11chr7+2633163026331753263316302633170626386039263860860.068000.000200.04622longerHepG2IGF2BP3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX10 is not avaliable on ENCORE database.