SMARCA1

General Information

Gene Name       : SMARCA1
Gene ID             : ENSG00000102038.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMARCA1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCA1ENSG00000102038.150.000.020.01ENCSR000AEF
HepG2SMARCA1ENSG00000102038.1559.29120.7090.00ENCSR985KAT
K562SMARCA1ENSG00000102038.151.271.611.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCA1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • SMARCA1 RNA is bound by 44 proteins.  







eCLIP assay for SMARCA1 is not avaliable on ENCORE database.





44 proteins are bound to SMARCA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX128580950128581006-3'-UTR,intron-Distal5.3966811.55524HepG2TIAL1
chrX128580916128580948-3'-UTR,intron-Distal3.213749.35433HepG2KHSRP
chrX128580799128580837-3'-UTR,intron-Distal3.406467.76787HepG2KHSRP
chrX128580648128580707-3'-UTR,intron-Distal3.8612619.89201HepG2FUBP3
chrX128580948128580963-3'-UTR,intron-Distal4.0710416.82649HepG2FUBP3
chrX128580629128580708-3'-UTR,intron-Distal4.5269616.41486HepG2CSTF2
chrX128580742128580783-3'-UTR,intron-Distal3.145355.06049HepG2ZC3H11A
chrX128580853128580916-3'-UTR,intron-Distal3.5202711.67708HepG2KHSRP
chrX128580852128580904-3'-UTR,intron-Distal4.603293.84732HepG2TIA1
chrX128580737128580776-3'-UTR,intron-Distal3.355736.49920HepG2KHSRP
chrX128581216128581265-3'-UTR,intron-Distal3.095433.31115HepG2RBM5
chrX128580963128580994-3'-UTR,intron-Distal4.3362113.96801HepG2FUBP3
chrX128581229128581294-3'-UTR,intron-Distal3.013837.67714HepG2U2AF2
chrX128582242128582300-3'-UTR,CDS,intron-Distal,intron-Proximal3.677187.01381HepG2TIAL1
chrX128580811128580860-3'-UTR,intron-Distal3.285875.23265HepG2TIAL1
chrX128580832128580854-3'-UTR,intron-Distal3.6636813.72310HepG2FUBP3
chrX128580649128580710-3'-UTR,intron-Distal3.709779.61529HepG2KHSRP
chrX128580797128580832-3'-UTR,intron-Distal4.0632014.05746HepG2FUBP3
chrX128580837128580853-3'-UTR,intron-Distal3.784428.83103HepG2KHSRP
chrX128580857128580994-3'-UTR,intron-Distal3.5445639.08936HepG2DDX55
chrX128580864128580950-3'-UTR,intron-Distal3.7813012.33937HepG2TIAL1
chrX128580742128580785-3'-UTR,intron-Distal5.0047212.28578HepG2FUBP3
chrX128580904128580997-3'-UTR,intron-Distal5.245946.72170HepG2TIA1
chrX128580854128580948-3'-UTR,intron-Distal4.9077373.85664HepG2FUBP3
chrX128657303128657356-5'-UTR,CDS,intron-Distal,intron-Proximal3.830327.99227HepG2RPS3
chrX128657323128657360-5'-UTR,CDS,intron-Distal3.997437.67612HepG2EIF3H
chrX128599849128599882-CDS,intron-Distal3.4944915.07735HepG2GRWD1
chrX128649870128649893-CDS,intron-Distal,intron-Proximal3.4428510.63716HepG2G3BP1
chrX128649920128649971-CDS,intron-Distal3.5575020.93446HepG2PPIG
chrX128630727128630773-CDS,intron-Distal3.6727315.91208HepG2G3BP1
chrX128599824128599841-CDS,intron-Distal4.2338230.48990HepG2BCLAF1
chrX128622913128622917-CDS,intron-Distal,intron-Proximal4.2445225.79765HepG2BCLAF1
chrX128599574128599590-CDS,intron-Distal4.4288230.52543HepG2BCLAF1
chrX128621001128621013-CDS,intron-Distal5.0144453.58995HepG2BCLAF1
chrX128650308128650311-CDS,intron-Distal5.1368427.20415HepG2BCLAF1
chrX128641944128641976-CDS,intron-Distal,intron-Proximal5.4075240.44225HepG2BCLAF1
chrX128649753128649764-CDS,intron-Distal3.9013140.55885HepG2BCLAF1
chrX128649870128649895-CDS,intron-Distal,intron-Proximal3.364483.68924HepG2PRPF4
chrX128621097128621113-CDS,intron-Distal3.157416.00923HepG2FXR2
chrX128649916128649973-CDS,intron-Distal,intron-Proximal3.691404.27750HepG2TRA2A
chrX128649664128649683-CDS,intron-Distal3.735377.82075HepG2PPIG
chrX128657325128657341-CDS,intron-Distal3.4350711.50159HepG2GRWD1
chrX128615120128615151-CDS,intron-Distal4.5037170.86334HepG2BCLAF1
chrX128650307128650318-CDS,intron-Distal,intron-Proximal3.8120912.22063HepG2GRWD1
chrX128615136128615163-CDS,intron-Distal,intron-Proximal5.202428.40868HepG2SDAD1
chrX128625917128625953-CDS,intron-Distal,intron-Proximal4.0688043.30529HepG2BCLAF1
chrX128599644128599696-CDS,intron-Distal3.0164813.59623HepG2GRWD1
chrX128625920128625952-CDS,intron-Distal4.3225211.91397HepG2PPIG
chrX128622915128622945-CDS,intron-Distal3.749626.62228HepG2FXR2
chrX128631932128631954-CDS,intron-Distal3.4437932.44742HepG2BCLAF1
chrX128631912128631932-CDS,intron-Distal3.5454448.83681HepG2BCLAF1
chrX128652354128652420-CDS,intron-Distal3.081164.47384HepG2AQR
chrX128630723128630771-CDS,intron-Distal,intron-Proximal4.092976.96096HepG2TRA2A
chrX128615067128615091-CDS,intron-Distal3.042166.95570HepG2PPIG
chrX128630728128630770-CDS,intron-Distal3.191338.91628HepG2ZNF800
chrX128649926128649971-CDS,intron-Distal3.2579012.47620HepG2ZNF800
chrX128630740128630784-CDS,intron-Distal4.0814971.25650HepG2BCLAF1
chrX128631933128631954-CDS,intron-Distal3.2568514.77806HepG2GRWD1
chrX128599847128599876-CDS,intron-Distal4.9236937.77307HepG2BCLAF1
chrX128620994128621026-CDS,intron-Distal,intron-Proximal3.222309.84415HepG2ZNF800
chrX128645791128645807-CDS,intron-Distal3.144894.02671HepG2UCHL5
chrX128622917128622945-CDS,intron-Distal4.4609042.62211HepG2BCLAF1
chrX128631889128631912-CDS,intron-Distal3.7870247.45616HepG2BCLAF1
chrX128631955128632010-CDS,intron-Distal3.0074918.53174HepG2GRWD1
chrX128582394128582419-CDS,intron-Distal3.507264.51056HepG2LSM11
chrX128649734128649764-CDS,intron-Distal4.5053315.04885HepG2G3BP1
chrX128620994128621001-CDS,intron-Distal,intron-Proximal4.5994142.90191HepG2BCLAF1
chrX128615151128615162-CDS,intron-Distal4.1518256.21676HepG2BCLAF1
chrX128630726128630729-CDS,intron-Distal,intron-Proximal4.0636435.27855HepG2BCLAF1
chrX128649662128649681-CDS,intron-Distal,intron-Proximal3.480036.22359HepG2BUD13
chrX128638690128638718-CDS,intron-Distal,intron-Proximal4.572514.35676HepG2PRPF8
chrX128615090128615156-CDS,intron-Distal3.8000015.98472HepG2ZNF800
chrX128599646128599699-CDS,intron-Distal4.5954814.30666HepG2ZNF800
chrX128620994128621032-CDS,intron-Distal,intron-Proximal3.6215112.74698HepG2G3BP1
chrX128624162128624168-CDS,intron-Distal4.0177221.52247HepG2BCLAF1
chrX128605199128605224-CDS,intron-Distal5.3752335.42789HepG2BCLAF1
chrX128649737128649764-CDS,intron-Distal4.2897610.99077HepG2ZNF800
chrX128649870128649894-CDS,intron-Distal,intron-Proximal4.2296247.75580HepG2BCLAF1
chrX128623039128623052-CDS,intron-Distal4.2718827.51432HepG2BCLAF1
chrX128626000128626023-CDS,intron-Distal3.6504637.17702HepG2BCLAF1
chrX128625981128626023-CDS,intron-Distal4.1283019.40122HepG2GRWD1
chrX128621096128621113-CDS,intron-Distal4.2668135.09768HepG2BCLAF1
chrX128649740128649762-CDS,intron-Distal3.828825.06403HepG2FASTKD2
chrX128631909128631933-CDS,intron-Distal3.4285521.60518HepG2GRWD1
chrX128621013128621032-CDS,intron-Distal5.6527749.70934HepG2BCLAF1
chrX128624160128624169-CDS,intron-Distal3.211479.19564HepG2GRWD1
chrX128605201128605220-CDS,intron-Distal3.7577512.50445HepG2GRWD1
chrX128625917128625924-CDS,intron-Distal,intron-Proximal3.3901112.57285HepG2GRWD1
chrX128615117128615160-CDS,intron-Distal4.116374.38653HepG2U2AF1
chrX128626045128626068-CDS,intron-Distal4.0726710.33062HepG2G3BP1
chrX128599642128599695-CDS,intron-Distal4.1780246.89842HepG2BCLAF1
chrX128630728128630790-CDS,intron-Distal3.7909211.28986HepG2FXR2
chrX128631891128631909-CDS,intron-Distal3.3677714.00114HepG2GRWD1
chrX128631890128631909-CDS,intron-Distal3.149046.17206HepG2EIF3D
chrX128649871128649900-CDS,intron-Distal4.0487912.26818HepG2ZNF800
chrX128649732128649753-CDS,intron-Distal4.1534043.88562HepG2BCLAF1
chrX128649870128649920-CDS,intron-Distal,intron-Proximal4.1242223.25812HepG2PPIG
chrX128649727128649764-CDS,intron-Distal3.180099.14877HepG2PPIG
chrX128649732128649764-CDS,intron-Distal3.5472616.46315HepG2GRWD1
chrX128582331128582366-CDS,intron-Distal3.416687.55225HepG2FXR2
chrX128627043128627052-CDS,intron-Distal3.017715.33198HepG2PPIG
chrX128623052128623061-CDS,intron-Distal3.8759025.32555HepG2BCLAF1
chrX128620994128621037-CDS,intron-Distal,intron-Proximal4.4463013.10755HepG2FXR2
chrX128625980128626022-CDS,intron-Distal3.0630110.38331HepG2HLTF
chrX128615112128615150-CDS,intron-Distal3.5022918.19542HepG2GRWD1
chrX128631894128631932-CDS,intron-Distal4.364919.90777HepG2PPIG
chrX128625924128625960-CDS,intron-Distal3.6874717.55463HepG2GRWD1
chrX128622916128622932-CDS,intron-Distal3.7233413.18813HepG2GRWD1
chrX128630729128630740-CDS,intron-Distal4.5408654.11886HepG2BCLAF1
chrX128605217128605243-CDS,intron-Distal3.374053.01092HepG2LIN28B
chrX128630727128630792-CDS,intron-Distal3.0752923.30107HepG2GRWD1
chrX128649936128649971-CDS,intron-Distal3.9805942.21841HepG2BCLAF1
chrX128625975128626000-CDS,intron-Distal3.5439141.20160HepG2BCLAF1
chrX128645900128645941-CDS,intron-Distal4.628094.40376HepG2WDR43
chrX128649665128649678-CDS,intron-Distal3.9501124.71760HepG2BCLAF1
chrX128626058128626069-CDS,intron-Distal4.2007325.87880HepG2BCLAF1
chrX128615110128615162-CDS,intron-Distal3.2941212.17837HepG2FXR2
chrX128649953128649971-CDS,intron-Distal3.3686617.35893HepG2GRWD1
chrX128649870128649898-CDS,intron-Distal,intron-Proximal3.5162415.86265HepG2GRWD1
chrX128649943128649953-CDS,intron-Distal3.3458715.72501HepG2GRWD1
chrX128649663128649665-CDS,intron-Distal,intron-Proximal3.7413022.00299HepG2BCLAF1
chrX128622916128622951-CDS,intron-Distal3.518783.22554HepG2TRA2A
chrX128589222128589260-intron-Distal3.830835.54651HepG2SUGP2
chrX128626565128626623-intron-Distal5.5929027.46199HepG2QKI
chrX128618769128618894-intron-Distal3.363997.99130HepG2KHSRP
chrX128636428128636484-intron-Distal3.620925.08575HepG2SUGP2
chrX128650220128650269-intron-Distal,intron-Proximal3.633975.93274HepG2PTBP1
chrX128630053128630109-intron-Distal5.9243325.82638HepG2QKI
chrX128629576128629614-intron-Distal3.6752110.28497HepG2QKI
chrX128638218128638318-intron-Distal4.472104.40847HepG2PTBP1
chrX128636760128636818-intron-Distal4.090359.81671HepG2PTBP1
chrX128618557128618598-intron-Distal4.082494.00239HepG2KHSRP
chrX128656958128656993-intron-Distal5.746656.68817HepG2EFTUD2
chrX128637556128637623-intron-Distal3.906428.82644HepG2PTBP1
chrX128648618128648713-intron-Distal3.796579.12237HepG2PTBP1
chrX128630455128630543-intron-Distal4.198003.97888HepG2HNRNPL
chrX128656346128656436-intron-Distal4.010554.07750HepG2HNRNPK
chrX128654768128654842-intron-Distal3.471104.23312HepG2CSTF2
chrX128630324128630389-intron-Distal6.7226475.91938HepG2QKI
chrX128626729128626784-intron-Distal3.799837.99130HepG2KHSRP
chrX128636534128636591-intron-Distal4.129857.02083HepG2PTBP1
chrX128629972128629997-intron-Distal5.0609315.32767HepG2QKI
chrX128582160128582250-intron-Distal,intron-Proximal3.0506611.29647HepG2KHSRP
chrX128626468128626531-intron-Distal5.0502811.50600HepG2QKI
chrX128634544128634631-intron-Distal3.560454.00486HepG2HNRNPL
chrX128655615128655680-intron-Distal4.660496.39685HepG2CSTF2
chrX128590299128590399-intron-Distal3.408129.43563HepG2MATR3
chrX128590212128590277-intron-Distal3.3244225.94947HepG2SUGP2
chrX128641235128641319-intron-Distal3.679074.54121HepG2KHSRP
chrX128628867128628925-intron-Distal3.455237.38332HepG2QKI
chrX128636735128636814-intron-Distal3.821477.31086HepG2QKI
chrX128590993128591072-intron-Distal3.6710011.59195HepG2SUGP2
chrX128587302128587415-intron-Distal3.3076213.49539HepG2SUGP2
chrX128618660128618722-intron-Distal4.185135.60471HepG2U2AF2
chrX128587346128587395-intron-Distal5.911408.95887HepG2HNRNPM
chrX128625606128625661-intron-Distal3.634197.55775HepG2U2AF2
chrX128587618128587677-intron-Distal3.386093.39857HepG2HNRNPM
chrX128636917128636976-intron-Distal4.206634.61322HepG2MATR3
chrX128631662128631747-intron-Distal,intron-Proximal3.495748.16340HepG2U2AF2
chrX128648560128648671-intron-Distal3.542504.89227HepG2KHSRP
chrX128640614128640672-intron-Distal3.282883.42293HepG2HNRNPC
chrX128626099128626142-intron-Distal,intron-Proximal4.245567.43408HepG2KHSRP
chrX128587670128587757-intron-Distal4.297806.63948HepG2MATR3
chrX128588344128588388-intron-Distal4.529086.05753HepG2SUGP2
chrX128626338128626379-intron-Distal4.9635213.65049HepG2KHSRP
chrX128629351128629399-intron-Distal5.136089.58171HepG2LIN28B
chrX128650227128650259-intron-Distal,intron-Proximal3.714575.40232HepG2U2AF2
chrX128637457128637499-intron-Distal4.114804.48652HepG2PTBP1
chrX128656864128656991-intron-Distal4.245829.08944HepG2XRN2
chrX128626538128626565-intron-Distal4.920667.75161HepG2QKI
chrX128656871128656971-intron-Distal5.3590211.61783HepG2CSTF2T
chrX128587655128587713-intron-Distal4.7556813.90883HepG2SUGP2
chrX128656879128656950-intron-Distal3.204819.67780HepG2NKRF
chrX128626487128626572-intron-Distal3.5972421.88726HepG2U2AF2
chrX128620217128620284-intron-Distal3.492913.97172HepG2QKI
chrX128626623128626660-intron-Distal5.3270216.72652HepG2QKI
chrX128656755128656830-intron-Distal3.115175.21772HepG2CSTF2T
chrX128630006128630038-intron-Distal4.4411910.10565HepG2QKI
chrX128628815128628867-intron-Distal4.826179.60550HepG2QKI
chrX128589704128589792-intron-Distal3.436224.67490HepG2MATR3
chrX128590891128590938-intron-Distal3.485518.28668HepG2SUGP2
chrX128599415128599477-intron-Distal,intron-Proximal5.7713011.36812HepG2U2AF2
chrX128626702128626832-intron-Distal3.691336.25768HepG2FUBP3
chrX128630389128630445-intron-Distal7.80112118.34348HepG2QKI
chrX128598739128598787-intron-Distal4.4134318.62001HepG2XPO5
chrX128590289128590348-intron-Distal3.1965813.86816HepG2SUGP2
chrX128636725128636824-intron-Distal3.944965.42643HepG2MATR3
chrX128618386128618481-intron-Distal3.955363.35850HepG2TIAL1
chrX128588748128588796-intron-Distal3.4802611.27895HepG2SUGP2
chrX128581726128581771-intron-Distal3.431736.49920HepG2KHSRP
chrX128590579128590636-intron-Distal3.896833.39827HepG2MATR3
chrX128618668128618769-intron-Distal3.454064.89227HepG2KHSRP
chrX128630378128630474-intron-Distal3.438139.87390HepG2PTBP1
chrX128618416128618462-intron-Distal3.344824.64228HepG2KHSRP
chrX128590223128590277-intron-Distal3.370887.29975HepG2MATR3
chrX128637311128637360-intron-Distal3.558223.10961HepG2MATR3
chrX128626572128626643-intron-Distal3.0769015.57425HepG2U2AF2
chrX128618353128618416-intron-Distal4.322487.70322HepG2KHSRP
chrX128655429128655506-intron-Distal4.945358.01538HepG2CSTF2
chrX128583488128583522-intron-Distal3.764244.28919HepG2KHSRP
chrX128656890128656944-intron-Distal5.8349019.69225HepG2EFTUD2
chrX128626720128626866-intron-Distal4.634135.77165HepG2TIAL1
chrX128626515128626594-intron-Distal3.417158.15421HepG2KHSRP
chrX128590050128590095-intron-Distal3.606829.66740HepG2SUGP2
chrX128637066128637138-intron-Distal3.002244.02246HepG2PTBP1
chrX128656996128657059-intron-Distal5.145359.23970HepG2CSTF2T
chrX128589718128589769-intron-Distal4.064479.50395HepG2SUGP2
chrX128637398128637451-intron-Distal4.142624.78196HepG2PTBP1
chrX128588796128588855-intron-Distal3.434537.08259HepG2SUGP2
chrX128626296128626319-intron-Distal4.394059.59273HepG2KHSRP
chrX128636644128636742-intron-Distal3.137857.19064HepG2HNRNPL
chrX128590938128590972-intron-Distal3.851349.50395HepG2SUGP2
chrX128622508128622592-intron-Distal3.823693.03357HepG2HNRNPC
chrX128629924128629972-intron-Distal5.7893325.29843HepG2QKI
chrX128605746128605850-intron-Distal4.0895711.31780HepG2PTBP1
chrX128621383128621436-intron-Distal3.305633.80334HepG2U2AF2
chrX128626159128626188-intron-Distal,intron-Proximal3.267513.04623HepG2KHSRP
chrX128590635128590678-intron-Distal4.1439711.46951HepG2SUGP2
chrX128590581128590635-intron-Distal3.7115111.22575HepG2SUGP2
chrX128657065128657118-intron-Distal4.041958.32276HepG2EFTUD2
chrX128646051128646091-intron-Distal,intron-Proximal4.093784.24308HepG2TIAL1
chrX128589791128589844-intron-Distal4.0658316.41301HepG2SUGP2
chrX128626784128626841-intron-Distal5.1489314.19168HepG2KHSRP
chrX128630445128630471-intron-Distal5.0690216.37775HepG2QKI
chrX128656993128657047-intron-Distal4.0549812.39952HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMARCA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCA1 is not available on ENCORE database.

  • 107 RBPs can affect the levels of SMARCA1.  








The Knockdown/knockout RNA-Seq assay for SMARCA1 is not available on ENCORE database.





107 RBPs can affect the gene expression of SMARCA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCA1ENSG00000102038.115163.343708381.44180-0.6989033.9838032.43080HepG2ACO1
SMARCA1ENSG00000102038.116603.4979013323.87700-1.0127017.0858015.87910HepG2AKAP1
SMARCA1ENSG00000102038.116977.823209409.05060-0.431302.935801.86740HepG2AKAP8
SMARCA1ENSG00000102038.1110193.285808493.413400.263102.760201.35860HepG2ATP5C1
SMARCA1ENSG00000102038.114372.959106402.29560-0.550004.520403.32120HepG2BCCIP
SMARCA1ENSG00000102038.117099.434909455.12990-0.413405.124904.34120HepG2BOP1
SMARCA1ENSG00000102038.1111361.798908880.241900.355403.354102.51530HepG2CALR
SMARCA1ENSG00000102038.118496.9280012385.78590-0.543702.262501.38960HepG2CCAR1
SMARCA1ENSG00000102038.1112722.0390010474.023300.280402.270401.56490HepG2CIRBP
SMARCA1ENSG00000102038.117561.904008379.68000-0.148102.415701.78630HepG2CKAP4
SMARCA1ENSG00000102038.115517.676707621.65090-0.466002.673101.92230HepG2CNOT7
SMARCA1ENSG00000102038.116388.602207750.59250-0.278802.688801.59970HepG2CPSF7
SMARCA1ENSG00000102038.116829.200505936.890200.201902.337301.40420HepG2YBX3
SMARCA1ENSG00000102038.111896.129003955.38060-1.0608016.8861014.62120HepG2CSTF2
SMARCA1ENSG00000102038.115933.186009069.76210-0.6123019.8992018.49410HepG2CELF1
SMARCA1ENSG00000102038.118506.931509752.79290-0.197204.240603.35350HepG2DAZAP1
SMARCA1ENSG00000102038.114655.363505945.18700-0.352806.027804.38250HepG2DDX1
SMARCA1ENSG00000102038.117655.1733012763.58910-0.7375011.1803010.00190HepG2DDX3X
SMARCA1ENSG00000102038.113853.285006294.52180-0.708007.897106.66940HepG2DDX55
SMARCA1ENSG00000102038.1112370.069108465.026400.547203.608402.46000HepG2DDX5
SMARCA1ENSG00000102038.114997.0170010963.42680-1.1336021.0359019.54520HepG2DDX6
SMARCA1ENSG00000102038.1110120.559508018.784000.335707.718806.69640HepG2DKC1
SMARCA1ENSG00000102038.114108.347705778.09570-0.4920018.6552017.10810HepG2DNAJC2
SMARCA1ENSG00000102038.117660.4554011340.73710-0.566004.693903.81250HepG2EIF4B
SMARCA1ENSG00000102038.1112993.156709621.236100.4334012.3227010.80690HepG2EIF4G1
SMARCA1ENSG00000102038.117553.650809216.61690-0.287102.630801.83530HepG2EIF4G2
SMARCA1ENSG00000102038.118172.6398011574.33120-0.5021016.0559014.80440HepG2ETF1
SMARCA1ENSG00000102038.117280.052709502.06450-0.384303.223102.39860HepG2FIP1L1
SMARCA1ENSG00000102038.116559.681105239.572300.324102.980601.66390HepG2FKBP4
SMARCA1ENSG00000102038.115666.576208260.49730-0.543802.692701.59120HepG2FUS
SMARCA1ENSG00000102038.117614.0765011751.72760-0.626108.626707.46330HepG2FXR1
SMARCA1ENSG00000102038.117578.1246010902.03140-0.524705.516604.59000HepG2G3BP1
SMARCA1ENSG00000102038.112726.853605215.82500-0.9357010.941809.24110HepG2GEMIN5
SMARCA1ENSG00000102038.114289.358806779.21900-0.660403.738202.55020HepG2GNB2L1
SMARCA1ENSG00000102038.114936.873107054.71740-0.515003.592602.32030HepG2GRSF1
SMARCA1ENSG00000102038.116616.738008001.91380-0.274203.626502.52040HepG2HDGF
SMARCA1ENSG00000102038.115564.934106546.46480-0.234402.008201.40710HepG2HNRNPC
SMARCA1ENSG00000102038.118205.888807050.218100.218902.410501.73800HepG2HNRNPF
SMARCA1ENSG00000102038.119098.9325011037.93830-0.278702.462101.80110HepG2HNRNPK
SMARCA1ENSG00000102038.116734.552908884.22130-0.3997015.4698013.99120HepG2HNRNPL
SMARCA1ENSG00000102038.1111513.793609390.211900.294001.912201.38060HepG2HNRNPLL
SMARCA1ENSG00000102038.115327.937806556.74030-0.299403.139602.13040HepG2HNRNPM
SMARCA1ENSG00000102038.115216.766706503.18420-0.318006.571205.67130HepG2HNRNPU
SMARCA1ENSG00000102038.118194.256806942.517700.239102.921902.17940HepG2IGF2BP1
SMARCA1ENSG00000102038.114966.152706642.78890-0.4197015.6567014.07490HepG2ILF2
SMARCA1ENSG00000102038.115631.262907258.53590-0.366202.471301.36240HepG2KHDRBS1
SMARCA1ENSG00000102038.116760.922707661.72590-0.180403.357602.23410HepG2KIF1C
SMARCA1ENSG00000102038.118894.3824011755.82540-0.402403.743202.97980HepG2MAGOH
SMARCA1ENSG00000102038.118717.5342011821.80090-0.439503.938203.19770HepG2MATR3
SMARCA1ENSG00000102038.114394.146306131.10580-0.480602.549901.53710HepG2METAP2
SMARCA1ENSG00000102038.115451.140007691.49900-0.496707.887006.58660HepG2MSI2
SMARCA1ENSG00000102038.118480.038006458.305800.392805.101703.46470HepG2NAA15
SMARCA1ENSG00000102038.116782.5754012100.41660-0.8352013.3135011.98700HepG2NCBP2
SMARCA1ENSG00000102038.117946.515209670.81870-0.283304.028303.10820HepG2NOL12
SMARCA1ENSG00000102038.1113766.276708326.284100.7253013.8137012.27780HepG2NSUN2
SMARCA1ENSG00000102038.114784.677106964.99330-0.541703.059502.12400HepG2PABPC1
SMARCA1ENSG00000102038.114920.220706437.05020-0.387708.943607.56090HepG2PARN
SMARCA1ENSG00000102038.116138.7453010550.06380-0.7812037.2847035.50450HepG2PCBP1
SMARCA1ENSG00000102038.116583.3684010735.37180-0.7055030.3255028.90060HepG2PTBP1
SMARCA1ENSG00000102038.116160.527109799.44150-0.6696041.8274040.08330HepG2PUM1
SMARCA1ENSG00000102038.118414.899909792.39930-0.218702.490201.85360HepG2PUM2
SMARCA1ENSG00000102038.116369.619608537.05090-0.4225013.3772012.19810HepG2PUS1
SMARCA1ENSG00000102038.119775.3638011626.06020-0.250103.256802.58700HepG2QKI
SMARCA1ENSG00000102038.115165.809507548.26250-0.547202.359601.70540HepG2RAVER1
SMARCA1ENSG00000102038.114809.340006783.18690-0.496104.891002.49810HepG2RBM14
SMARCA1ENSG00000102038.118209.5168011233.35690-0.452405.385604.23710HepG2RBM15
SMARCA1ENSG00000102038.116920.750409674.04260-0.4832012.2084011.27890HepG2RBM22
SMARCA1ENSG00000102038.119564.7853011947.19930-0.320907.135206.33600HepG2NELFE
SMARCA1ENSG00000102038.118983.1906011127.62560-0.308806.836405.93000HepG2RECQL
SMARCA1ENSG00000102038.119494.790407593.830200.322202.403601.75910HepG2RPLP0
SMARCA1ENSG00000102038.1110480.427707411.935500.499703.216702.19940HepG2RPS10
SMARCA1ENSG00000102038.113962.265405699.63640-0.524505.142804.33510HepG2RPS19
SMARCA1ENSG00000102038.117767.3004011649.86830-0.584805.126404.18960HepG2SF3A3
SMARCA1ENSG00000102038.1114076.219009294.402800.598706.009805.00350HepG2SF3B1
SMARCA1ENSG00000102038.119573.9876011176.39230-0.223303.858903.17920HepG2SF3B4
SMARCA1ENSG00000102038.1110224.040408851.171500.207904.347203.49690HepG2SLBP
SMARCA1ENSG00000102038.115552.964906753.73480-0.282407.999506.99650HepG2SMN1
SMARCA1ENSG00000102038.119104.5233010926.55190-0.263205.741905.09330HepG2SRFBP1
SMARCA1ENSG00000102038.119940.7539011665.94430-0.230904.625904.05380HepG2SRSF1
SMARCA1ENSG00000102038.117523.8337010000.95750-0.410603.161502.08210HepG2SRSF3
SMARCA1ENSG00000102038.117670.132409491.04820-0.307307.132506.32130HepG2SRSF9
SMARCA1ENSG00000102038.114697.284006653.07370-0.502203.966402.62570HepG2STIP1
SMARCA1ENSG00000102038.117117.1601010365.91410-0.5425025.0327023.46920HepG2SUCLG1
SMARCA1ENSG00000102038.117751.741306417.235000.272503.011602.03400HepG2SUPT6H
SMARCA1ENSG00000102038.115100.336306319.09210-0.309104.170303.58370HepG2TIAL1
SMARCA1ENSG00000102038.113664.062506375.54420-0.7991036.0533034.30710HepG2TRIM56
SMARCA1ENSG00000102038.115788.154708129.05320-0.490006.079205.16490HepG2U2AF1
SMARCA1ENSG00000102038.118082.6831015374.71670-0.927702.272801.38980HepG2U2AF2
SMARCA1ENSG00000102038.112083.991403702.10930-0.8290011.184609.67560HepG2UCHL5
SMARCA1ENSG00000102038.116731.003509974.79780-0.5675015.6786014.42530HepG2UTP3
SMARCA1ENSG00000102038.114483.784006168.68580-0.460204.184003.29930HepG2XRN2
SMARCA1ENSG00000102038.117180.115105748.757200.320705.661504.75340HepG2ZC3H8
SMARCA1ENSG00000102038.118223.3799011362.83600-0.4665018.4693017.36650HepG2ZNF622
SMARCA1ENSG00000102038.1138.6619099.62790-1.365602.465201.90480K562AQR
SMARCA1ENSG00000102038.1159.52200157.34690-1.402507.717706.11270K562CELF1
SMARCA1ENSG00000102038.11157.1208093.485400.749003.133402.19310K562DKC1
SMARCA1ENSG00000102038.1150.4324018.002401.486103.101001.67620K562DNAJC21
SMARCA1ENSG00000102038.1110.1525040.88450-2.009703.507102.05100K562EEF2
SMARCA1ENSG00000102038.1154.90790106.28550-0.952903.388402.51380K562EIF3G
SMARCA1ENSG00000102038.1136.8838086.00790-1.221503.985003.00210K562EIF4A3
SMARCA1ENSG00000102038.1138.1690077.45920-1.021003.058201.82640K562EIF4B
SMARCA1ENSG00000102038.11126.1109070.859000.831602.724201.81610K562FTO
SMARCA1ENSG00000102038.1136.7443089.44540-1.283504.385103.64730K562FXR1
SMARCA1ENSG00000102038.1146.7209095.48870-1.031303.507702.22400K562GLRX3
SMARCA1ENSG00000102038.11132.7741078.470400.758702.565901.79940K562GPKOW
SMARCA1ENSG00000102038.11114.5539068.653400.738502.002601.35390K562GRSF1
SMARCA1ENSG00000102038.11156.1731086.860600.846303.839602.56730K562HNRNPL
SMARCA1ENSG00000102038.1163.41100112.43170-0.826202.347601.42460K562IGF2BP2
SMARCA1ENSG00000102038.1168.54160118.14700-0.785503.051202.16800K562MAGOH
SMARCA1ENSG00000102038.1160.50450117.90510-0.962503.856402.75240K562MATR3
SMARCA1ENSG00000102038.1145.02020111.54160-1.308905.640004.63000K562NSUN2
SMARCA1ENSG00000102038.1138.87620114.78830-1.562007.988906.90140K562PTBP1
SMARCA1ENSG00000102038.1151.91700110.06040-1.084004.289203.21420K562RBM22
SMARCA1ENSG00000102038.1167.91040115.82280-0.770202.616101.55680K562NELFE
SMARCA1ENSG00000102038.1155.31410104.67340-0.920203.345201.60350K562RPS10
SMARCA1ENSG00000102038.1142.67170134.02190-1.651105.561103.42020K562SFPQ
SMARCA1ENSG00000102038.1162.49800112.77240-0.851502.941801.98190K562SRPK2
SMARCA1ENSG00000102038.1151.66180113.88670-1.140404.581003.66550K562TARDBP
SMARCA1ENSG00000102038.11176.88080118.270400.580602.382201.71310K562UPF1
SMARCA1ENSG00000102038.1133.2181088.05730-1.406504.639703.07700K562UTP3
SMARCA1ENSG00000102038.1161.69130101.19950-0.714102.116301.35200K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCA1 is not available on ENCORE database.





26 RBPs can affect the splicing of SMARCA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.150000.000110.01097excludedHepG2RBM22
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259831286260701286307261286308480.114000.000070.00212includedHepG2U2AF1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.183000.000000.00070excludedHepG2PRPF8
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.125000.000000.00116includedHepG2ILF3
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.198000.000000.00000includedHepG2HNRNPK
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.138000.000000.00051excludedHepG2QKI
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.218000.000000.00000includedHepG2U2AF2
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.182000.000000.00001excludedHepG2AKAP1
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.144000.000000.00001includedHepG2SRSF7
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.165000.000000.00006excludedHepG2DDX3X
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.249000.000000.00013excludedHepG2BCLAF1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.120000.000100.01025excludedHepG2NCBP2
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.505000.000000.00000excludedHepG2PTBP1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.126000.000060.01523excludedHepG2HNRNPA1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.119000.003200.09927excludedHepG2MATR3
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.184000.000000.00019excludedHepG2HNRNPUL1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.177000.000000.00073excludedHepG2GRSF1
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.145000.000000.00018includedHepG2SUPV3L1
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630826-0.301000.000000.00000excludedHepG2NOL12
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.083000.000200.01279includedHepG2SF3B4
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.100000.000000.00087includedHepG2TAF15
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.257000.000000.00000excludedHepG2HNRNPC
SESMARCA1ENSG00000102038.11chrX-128627016128627052128625917128626070128630726128630848-0.138000.000180.04533excludedHepG2PRPF4
SESMARCA1ENSG00000102038.11chrX-1286270161286270521286259171286260701286307261286308480.108000.000020.00737includedHepG2KHSRP
A3SSSMARCA1ENSG00000102038.11chrX-128580481128581278128580481128581210128582309128582420-0.087000.000000.00062shorterHepG2MATR3
A3SSSMARCA1ENSG00000102038.11chrX-128580481128581278128580481128581210128582309128582420-0.091000.000030.00505shorterHepG2SRSF1
A3SSSMARCA1ENSG00000102038.11chrX-1285804811285812781285804811285812101285823091285824200.100000.000090.04470longerHepG2DDX6
A3SSSMARCA1ENSG00000102038.11chrX-1285804811285812781285804811285812101285823091285824200.113000.000050.01685longerHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCA1 is not avaliable on ENCORE database.