SCRN2

General Information

Gene Name       : SCRN2
Gene ID             : ENSG00000141295.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SCRN2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCRN2ENSG00000141295.131.877.324.60ENCSR000AEF
HepG2SCRN2ENSG00000141295.1326.7011.4019.05ENCSR985KAT
K562SCRN2ENSG00000141295.1315.129.1212.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCRN2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCRN2 RNA is bound by 14 proteins.  







eCLIP assay for SCRN2 is not avaliable on ENCORE database.





14 proteins are bound to SCRN2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174591615945916205-3'-UTR,CDS,intron-Distal,intron-Proximal3.491475.86107HepG2PPIG
chr174591537545915470-3'-UTR,intron-Distal5.430438.42776K562SF3B4
chr174591628845916357-3'-UTR,CDS,intron-Distal,intron-Proximal3.302113.36945K562ZNF622
chr174591589445915924-3'-UTR,CDS,intron-Distal,intron-Proximal3.435463.34848HepG2PPIG
chr174591525345915334-3'-UTR,CDS,intron-Distal3.980963.58172HepG2SRSF1
chr174591525945915373-3'-UTR,CDS,intron-Distal3.832497.91102HepG2LSM11
chr174591627345916359-3'-UTR,CDS,intron-Distal,intron-Proximal3.460775.74131HepG2PPIG
chr174591595745915984-3'-UTR,CDS,intron-Distal4.691184.38106HepG2PPIG
chr174591557045915627-3'-UTR,CDS,intron-Distal,intron-Proximal4.227554.23812HepG2LSM11
chr174591603345916060-3'-UTR,CDS,intron-Distal,intron-Proximal3.584683.86355HepG2PPIG
chr174591540745915467-3'-UTR,intron-Distal4.269723.83279HepG2ZC3H11A
chr174591847345918610-5'-UTR,intron-Distal,intron-Proximal4.804936.13547HepG2NCBP2
chr174591846445918526-5'-UTR,intron-Distal,intron-Proximal4.826393.11886K562DROSHA
chr174591843545918547-5'-UTR,intron-Distal,intron-Proximal4.300404.36078K562GTF2F1
chr174591844445918599-5'-UTR,intron-Distal,intron-Proximal5.348978.32512HepG2PRPF4
chr174591804445918125-CDS,intron-Distal3.267633.77784K562RBM15
chr174591798545918077-CDS,intron-Distal,intron-Proximal3.453184.76426K562PRPF8
chr174591799045918112-CDS,intron-Distal,intron-Proximal3.5137816.67948HepG2PRPF8
chr174591757745917625-CDS,intron-Distal3.327745.58370HepG2PPIG
chr174591771745917771-CDS,intron-Distal,intron-Proximal3.579373.95921HepG2U2AF2
chr174591673345916793-intron-Distal,intron-Proximal4.892345.17615K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCRN2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCRN2 is not available on ENCORE database.

  • 94 RBPs can affect the levels of SCRN2.  








The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.





94 RBPs can affect the gene expression of SCRN2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCRN2ENSG00000141295.9532.76520338.307100.655102.656201.73260HepG2ABCF1
SCRN2ENSG00000141295.9137.54330377.25580-1.4557021.0076019.68210HepG2ACO1
SCRN2ENSG00000141295.9817.50420508.755800.684205.741404.63290HepG2ASCC1
SCRN2ENSG00000141295.9384.79570615.57780-0.677807.983006.91450HepG2AUH
SCRN2ENSG00000141295.9394.60840233.812500.755004.165003.08230HepG2BCLAF1
SCRN2ENSG00000141295.9118.31100216.57150-0.872304.697403.72520HepG2CALR
SCRN2ENSG00000141295.9232.46920145.983100.671103.040902.32470HepG2CPSF6
SCRN2ENSG00000141295.9323.38990431.10100-0.414802.742402.10200HepG2CELF1
SCRN2ENSG00000141295.9433.27460348.899800.312402.125001.38650HepG2DDX19B
SCRN2ENSG00000141295.9415.01540270.127400.619404.170403.35350HepG2DDX21
SCRN2ENSG00000141295.9425.96590588.97400-0.467502.704602.08490HepG2DDX3X
SCRN2ENSG00000141295.9579.72890360.927200.683607.615806.59700HepG2DKC1
SCRN2ENSG00000141295.9341.77340207.033700.723105.353204.49020HepG2DNAJC2
SCRN2ENSG00000141295.9177.08110368.63130-1.0578010.145508.57900HepG2EWSR1
SCRN2ENSG00000141295.9209.68180341.57070-0.704002.936502.14330HepG2FIP1L1
SCRN2ENSG00000141295.9725.27400534.237700.440902.785701.89230HepG2G3BP2
SCRN2ENSG00000141295.9246.12590339.18380-0.462702.281801.36060HepG2GNB2L1
SCRN2ENSG00000141295.9486.71340360.161000.434303.554702.45730HepG2HDGF
SCRN2ENSG00000141295.9146.25670260.02360-0.830103.162201.67330HepG2HLTF
SCRN2ENSG00000141295.9477.06440210.816201.178104.968004.13520HepG2HNRNPA1
SCRN2ENSG00000141295.9417.89710234.514800.833404.381403.52390HepG2HNRNPC
SCRN2ENSG00000141295.9361.18850219.073700.721206.276405.25520HepG2HNRNPF
SCRN2ENSG00000141295.9573.95810422.249800.442704.244403.42360HepG2HNRNPL
SCRN2ENSG00000141295.9378.53400157.899201.2613011.016009.86260HepG2HNRNPLL
SCRN2ENSG00000141295.9506.06060232.962801.1191017.1282015.71920HepG2HNRNPU
SCRN2ENSG00000141295.9351.14420215.725800.702805.270704.30440HepG2IGF2BP1
SCRN2ENSG00000141295.9312.75090511.34200-0.709305.185504.28750HepG2IGF2BP2
SCRN2ENSG00000141295.9247.61580480.02850-0.955002.987301.96660HepG2IGF2BP3
SCRN2ENSG00000141295.9313.58360181.844000.786004.457802.89230HepG2KHDRBS1
SCRN2ENSG00000141295.9914.86610514.395100.830606.946405.27540HepG2KHSRP
SCRN2ENSG00000141295.9270.26230545.64130-1.013608.734307.66400HepG2MATR3
SCRN2ENSG00000141295.9462.36270276.276100.742805.413204.31330HepG2MSI2
SCRN2ENSG00000141295.9284.31940181.804500.645003.738602.30670HepG2PKM
SCRN2ENSG00000141295.9381.22050207.780600.875508.065506.85570HepG2PPIL4
SCRN2ENSG00000141295.9735.89660438.771600.745908.160207.20890HepG2PUF60
SCRN2ENSG00000141295.9573.22130384.257100.576906.339205.47540HepG2PUS1
SCRN2ENSG00000141295.994.36420247.37880-1.390406.967605.87530HepG2RAVER1
SCRN2ENSG00000141295.9220.92410590.74990-1.4190023.6337022.41780HepG2RBM22
SCRN2ENSG00000141295.91062.01920522.959201.0219017.4876015.89260HepG2RBM25
SCRN2ENSG00000141295.9522.72600325.437900.683604.311202.98610HepG2RCC2
SCRN2ENSG00000141295.9427.05740191.628401.156009.024807.60940HepG2RPS3A
SCRN2ENSG00000141295.9419.73750207.451401.0166011.5561010.37830HepG2SAFB2
SCRN2ENSG00000141295.9259.34510109.504001.243802.657301.34260HepG2SF1
SCRN2ENSG00000141295.9238.94290370.30890-0.632102.993602.29090HepG2SF3A3
SCRN2ENSG00000141295.9394.54220553.93280-0.489504.129303.43000HepG2SF3B4
SCRN2ENSG00000141295.9621.55070420.712900.562906.582005.57320HepG2SLBP
SCRN2ENSG00000141295.9360.27590252.697200.511602.359101.48150HepG2SMNDC1
SCRN2ENSG00000141295.9230.63070667.21580-1.5326032.9520031.72160HepG2SRFBP1
SCRN2ENSG00000141295.9382.70680578.18530-0.595305.942005.31430HepG2SRSF1
SCRN2ENSG00000141295.9244.90230433.22270-0.822908.515507.49450HepG2SRSF5
SCRN2ENSG00000141295.9363.68450215.229900.756706.760405.75020HepG2SRSF7
SCRN2ENSG00000141295.9190.47510470.38390-1.3042020.4946019.24810HepG2SRSF9
SCRN2ENSG00000141295.9858.19970579.276200.567007.750506.97720HepG2SSB
SCRN2ENSG00000141295.9370.41880519.69350-0.488503.872403.22770HepG2TAF15
SCRN2ENSG00000141295.9458.19160226.288901.017709.517008.68700HepG2TIAL1
SCRN2ENSG00000141295.9349.02930228.395500.611703.994003.34070HepG2TRIM56
SCRN2ENSG00000141295.9557.57060428.660800.379202.349601.55150HepG2TUFM
SCRN2ENSG00000141295.9153.28320292.09540-0.930205.133804.29250HepG2U2AF1
SCRN2ENSG00000141295.9226.53180155.579400.542002.106701.44560HepG2UCHL5
SCRN2ENSG00000141295.9422.75390328.406500.364202.381101.72530HepG2UPF1
SCRN2ENSG00000141295.9580.33600241.129901.267009.821607.86790HepG2UPF2
SCRN2ENSG00000141295.9221.94420317.06490-0.514603.093502.46660HepG2UTP3
SCRN2ENSG00000141295.9269.76970171.644500.652203.012101.86290HepG2XPO5
SCRN2ENSG00000141295.9660.51470259.281901.3490015.0959013.43410HepG2XRN2
SCRN2ENSG00000141295.9239.46990361.18550-0.592904.917904.24150HepG2ZNF622
SCRN2ENSG00000141295.9135.83240233.80300-0.783504.165502.68100K562AARS
SCRN2ENSG00000141295.9700.04580407.464300.7807011.1817010.13580K562AGGF1
SCRN2ENSG00000141295.9448.00060330.630500.438203.291301.62450K562AKAP1
SCRN2ENSG00000141295.9623.90140447.760800.478503.732302.55190K562AKAP8
SCRN2ENSG00000141295.9733.90910423.989800.791509.075507.81270K562AKAP8L
SCRN2ENSG00000141295.9384.73300544.35810-0.500702.604802.03120K562AQR
SCRN2ENSG00000141295.9632.31830444.876200.507104.952303.69210K562ATP5C1
SCRN2ENSG00000141295.9441.94520320.318400.464303.259802.21580K562BCLAF1
SCRN2ENSG00000141295.9205.88030125.747200.711203.008202.09660K562BOP1
SCRN2ENSG00000141295.9257.87490133.701500.947604.972403.92710K562CPSF6
SCRN2ENSG00000141295.9505.26350354.977700.509204.163901.94060K562DDX24
SCRN2ENSG00000141295.9489.15810335.016300.546004.222602.89530K562DDX3X
SCRN2ENSG00000141295.9247.94900409.84570-0.725006.777005.82210K562DDX47
SCRN2ENSG00000141295.9529.99110339.663200.641806.484304.19650K562DDX6
SCRN2ENSG00000141295.9105.18800227.31950-1.111804.761603.40370K562EIF3A
SCRN2ENSG00000141295.9126.98900222.10790-0.806603.928402.55670K562FKBP4
SCRN2ENSG00000141295.9192.34170363.99690-0.920308.548907.55630K562FXR1
SCRN2ENSG00000141295.940.89680141.14320-1.787106.485605.30090K562G3BP2
SCRN2ENSG00000141295.9668.43970537.865800.313502.230901.42880K562HNRNPU
SCRN2ENSG00000141295.9415.82880259.872300.678103.880302.58200K562IGF2BP2
SCRN2ENSG00000141295.9600.73410449.942700.416902.713301.89700K562KIF1C
SCRN2ENSG00000141295.9517.90350368.602700.490504.697003.75870K562NSUN2
SCRN2ENSG00000141295.9363.72820251.885100.530003.063201.54400K562NUSAP1
SCRN2ENSG00000141295.9502.78530291.857800.784603.291902.18420K562PABPN1
SCRN2ENSG00000141295.9201.11210321.62390-0.677403.547702.60640K562PCBP3
SCRN2ENSG00000141295.9172.90460246.69010-0.512702.553601.78680K562POLR2G
SCRN2ENSG00000141295.9306.55420192.241400.673102.347701.59380K562PPIG
SCRN2ENSG00000141295.9148.36360245.09710-0.724203.414802.57960K562PRPF8
SCRN2ENSG00000141295.9363.76960229.372300.665204.468203.27440K562PSIP1
SCRN2ENSG00000141295.9486.32540712.14860-0.550302.381401.62550K562PUF60
SCRN2ENSG00000141295.9927.94950420.448001.1420017.2659015.95180K562PUS1
SCRN2ENSG00000141295.9675.26890409.691000.720808.733907.70710K562RBM15
SCRN2ENSG00000141295.9304.52020209.275400.541002.952701.92750K562RCC2
SCRN2ENSG00000141295.9285.89470198.387200.527102.450001.49930K562SRFBP1
SCRN2ENSG00000141295.9192.22590260.01790-0.435801.924401.32180K562SRSF1
SCRN2ENSG00000141295.9401.33550245.608000.708405.316703.77380K562SRSF5
SCRN2ENSG00000141295.9467.83590338.490600.466803.631902.27930K562SRSF7
SCRN2ENSG00000141295.9136.27170247.44540-0.860605.511304.34430K562SYNCRIP
SCRN2ENSG00000141295.9454.92840263.119600.789805.899904.84040K562TARDBP
SCRN2ENSG00000141295.9344.79330253.817800.441802.339901.59500K562TIA1
SCRN2ENSG00000141295.9315.81460220.617500.517402.433301.55890K562TIAL1
SCRN2ENSG00000141295.9374.01630249.154800.586003.482402.22810K562TRA2A
SCRN2ENSG00000141295.9336.94270234.380700.523502.706701.77310K562TRIM56
SCRN2ENSG00000141295.9539.30540390.840900.464403.123802.36210K562UPF1
SCRN2ENSG00000141295.9439.84150334.424300.395202.366401.55490K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.





5 RBPs can affect the splicing of SCRN2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCRN2ENSG00000141295.9chr17-459175564591773845916809459170094591803545918539-0.335000.000380.08707excludedK562PCBP1
SESCRN2ENSG00000141295.9chr17-459175564591773845916809459170094591803545918539-0.137000.004200.08393excludedHepG2HNRNPK
A3SSSCRN2ENSG00000141295.9chr17-4591589645916085459158964591606245916156459163720.191000.000840.06140longerHepG2SF3A3
A3SSSCRN2ENSG00000141295.9chr17-4591680945917224459168094591700945917556459177380.264000.000060.00876longerHepG2HNRNPK
A3SSSCRN2ENSG00000141295.9chr17-4591589645916085459158964591606245916156459163720.442000.000000.00018longerHepG2RBM22
A3SSSCRN2ENSG00000141295.9chr17-4591680945917224459168094591700945917556459177380.347000.001040.08251longerHepG2RBM22
A3SSSCRN2ENSG00000141295.9chr17-4591680945917224459168094591700945917556459177380.624000.000040.04120longerK562FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCRN2 is not avaliable on ENCORE database.