RP11-22B23.1

General Information

Gene Name : RP11-22B23.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-22B23.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-22B23.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-22B23.1 RNA is bound by 10 proteins.

eCLIP assay for RP11-22B23.1 is not avaliable on ENCORE database.

10 proteins are bound to RP11-22B23.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	9446083	9446127	+	intron-Distal	4.16935	3.42734	K562	PTBP1
chr12	9453820	9453886	+	intron-Distal,intron-Proximal	5.70152	13.00238	HepG2	PRPF8
chr12	9458948	9458964	+	intron-Distal	4.67689	4.67689	HepG2	PPIG
chr12	9446752	9446855	+	intron-Distal	4.64458	5.14565	K562	UCHL5
chr12	9452003	9452053	+	intron-Distal	5.08468	5.86613	HepG2	PPIG
chr12	9459798	9459817	+	intron-Distal	4.59012	4.97342	HepG2	PPIG
chr12	9462936	9462983	+	intron-Distal,intron-Proximal	3.10267	5.74131	HepG2	PPIG
chr12	9459850	9459915	+	intron-Distal,intron-Proximal	3.74968	8.12130	HepG2	PPIG
chr12	9462556	9462603	+	intron-Distal	3.37716	7.64107	HepG2	PPIG
chr12	9464039	9464077	+	intron-Distal,intron-Proximal	4.92673	7.19196	HepG2	SF3B4
chr12	9464919	9464959	+	intron-Proximal	5.23482	5.69951	K562	AQR
chr12	9464426	9464477	+	intron-Proximal	3.64535	5.90285	HepG2	PRPF8
chr12	9447007	9447068	+	intron-Proximal	4.52713	3.70678	K562	BUD13
chr12	9465190	9465230	+	intron-Proximal	4.02156	4.00320	K562	AQR
chr12	9464433	9464482	+	intron-Proximal	3.79091	9.76340	HepG2	AQR
chr12	9464436	9464502	+	intron-Proximal	4.07368	3.31283	K562	PRPF8
chr12	9451394	9451470	+	intron-Proximal	3.04169	8.33590	HepG2	PPIG
chr12	9451376	9451489	+	intron-Proximal	4.87430	5.86954	K562	UCHL5
chr12	9447388	9447462	+	intron-Proximal	3.24731	4.23709	HepG2	AQR
chr12	9464430	9464504	+	intron-Proximal	5.81585	33.00250	K562	AQR
chr12	9464159	9464235	+	intron-Proximal	3.18783	6.49286	HepG2	PPIG
chr12	9447011	9447065	+	intron-Proximal	3.26838	5.75231	K562	AQR
chr12	9464427	9464430	+	intron-Proximal	5.84923	22.31003	K562	AQR
chr12	9451444	9451501	+	intron-Proximal	4.78452	12.24889	HepG2	PRPF8
chr12	9464326	9464343	+	intron-Proximal	4.41616	8.38781	HepG2	PPIG
chr12	9464390	9464484	+	intron-Proximal	3.05215	3.17613	K562	BUD13
chr12	9451485	9451501	+	intron-Proximal	6.44556	15.35700	K562	AQR
chr12	9451380	9451481	+	intron-Proximal	3.31711	7.87063	HepG2	GRWD1
chr12	9464426	9464433	+	intron-Proximal	3.30470	6.76873	HepG2	AQR
chr12	9446996	9447058	+	intron-Proximal	3.32091	4.63153	HepG2	AQR
chr12	9451403	9451474	+	intron-Proximal	4.01757	5.15776	HepG2	BCLAF1
chr12	9451457	9451485	+	intron-Proximal	4.95300	14.93855	K562	AQR
chr12	9447026	9447066	+	intron-Proximal	3.03740	6.49286	HepG2	PPIG
chr12	9447410	9447456	+	intron-Proximal	3.51593	7.64107	HepG2	PPIG
chr12	9451454	9451498	+	intron-Proximal	3.20076	4.20336	HepG2	AQR
chr12	9451401	9451474	+	intron-Proximal	4.15428	5.20093	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-22B23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-22B23.1 is not available on ENCORE database.
97 RBPs can affect the levels of RP11-22B23.1.

The Knockdown/knockout RNA-Seq assay for RP11-22B23.1 is not available on ENCORE database.

97 RBPs can affect the gene expression of RP11-22B23.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-22B23.1	ENSG00000111788.9	1124.48600	804.57510	0.48290	3.28650	2.26170	HepG2	ABCF1
RP11-22B23.1	ENSG00000111788.9	290.28100	575.31410	-0.98690	10.45260	9.42910	HepG2	ACO1
RP11-22B23.1	ENSG00000111788.9	523.66590	349.29240	0.58410	4.18340	2.98490	HepG2	ADAR
RP11-22B23.1	ENSG00000111788.9	142.49720	308.19930	-1.11290	4.81630	4.14010	HepG2	AKAP1
RP11-22B23.1	ENSG00000111788.9	431.56250	578.08560	-0.42170	3.64560	2.77820	HepG2	AKAP8L
RP11-22B23.1	ENSG00000111788.9	468.67540	742.87100	-0.66450	8.89290	7.77740	HepG2	AUH
RP11-22B23.1	ENSG00000111788.9	171.37350	298.22590	-0.79930	4.94880	3.77660	HepG2	BCLAF1
RP11-22B23.1	ENSG00000111788.9	358.92970	647.36620	-0.85090	8.95610	7.95560	HepG2	BOP1
RP11-22B23.1	ENSG00000111788.9	237.59880	570.29450	-1.26320	18.02640	16.37870	HepG2	CALR
RP11-22B23.1	ENSG00000111788.9	372.83770	594.30090	-0.67260	5.38450	4.45510	HepG2	CPSF6
RP11-22B23.1	ENSG00000111788.9	225.82800	363.96690	-0.68860	3.56010	1.94170	HepG2	CSTF2T
RP11-22B23.1	ENSG00000111788.9	343.52730	579.26590	-0.75380	8.95870	7.92560	HepG2	CELF1
RP11-22B23.1	ENSG00000111788.9	231.05070	391.92740	-0.76240	5.70680	4.76950	HepG2	DDX21
RP11-22B23.1	ENSG00000111788.9	280.89970	383.68530	-0.44990	2.47020	1.61060	HepG2	DDX24
RP11-22B23.1	ENSG00000111788.9	132.00030	295.17420	-1.16100	5.21520	4.37970	HepG2	DDX3X
RP11-22B23.1	ENSG00000111788.9	296.29840	479.55030	-0.69460	5.47360	3.69550	HepG2	DDX47
RP11-22B23.1	ENSG00000111788.9	176.37950	337.53390	-0.93630	6.38440	5.26790	HepG2	DDX55
RP11-22B23.1	ENSG00000111788.9	706.12660	550.44100	0.35920	2.98210	2.28200	HepG2	DKC1
RP11-22B23.1	ENSG00000111788.9	175.17120	361.03790	-1.04340	7.42290	5.64700	HepG2	AGO1
RP11-22B23.1	ENSG00000111788.9	477.93220	269.30740	0.82750	5.90840	4.97550	HepG2	EIF4A3
RP11-22B23.1	ENSG00000111788.9	664.00170	852.96910	-0.36130	3.36730	2.71380	HepG2	ETF1
RP11-22B23.1	ENSG00000111788.9	335.92160	562.25780	-0.74310	7.34500	5.98790	HepG2	EWSR1
RP11-22B23.1	ENSG00000111788.9	481.66410	812.42630	-0.75420	6.30820	5.19150	HepG2	FIP1L1
RP11-22B23.1	ENSG00000111788.9	377.56040	253.26760	0.57590	2.82910	2.03320	HepG2	FUBP3
RP11-22B23.1	ENSG00000111788.9	449.02250	271.91630	0.72350	4.41280	3.55290	HepG2	FXR1
RP11-22B23.1	ENSG00000111788.9	455.52480	267.81280	0.76620	5.40490	4.14640	HepG2	G3BP2
RP11-22B23.1	ENSG00000111788.9	247.97330	343.20220	-0.46890	2.16140	1.37560	HepG2	GEMIN5
RP11-22B23.1	ENSG00000111788.9	405.10970	549.31030	-0.43930	3.94830	2.79590	HepG2	HDGF
RP11-22B23.1	ENSG00000111788.9	253.87370	417.11010	-0.71630	3.23950	1.72970	HepG2	HLTF
RP11-22B23.1	ENSG00000111788.9	467.78620	355.08380	0.39760	2.25400	1.66690	HepG2	HNRNPA1
RP11-22B23.1	ENSG00000111788.9	372.34870	572.41990	-0.62040	6.40710	5.08700	HepG2	HNRNPA2B1
RP11-22B23.1	ENSG00000111788.9	668.99810	507.83550	0.39750	2.34010	1.67700	HepG2	HNRNPF
RP11-22B23.1	ENSG00000111788.9	556.58190	255.55470	1.12290	11.94450	10.59370	HepG2	HNRNPK
RP11-22B23.1	ENSG00000111788.9	391.82810	642.87200	-0.71430	5.98810	5.09910	HepG2	HNRNPLL
RP11-22B23.1	ENSG00000111788.9	399.49050	560.53520	-0.48860	3.55990	2.49090	HepG2	HNRNPM
RP11-22B23.1	ENSG00000111788.9	653.02190	500.07200	0.38490	2.77280	2.04750	HepG2	IGF2BP1
RP11-22B23.1	ENSG00000111788.9	426.51160	772.39080	-0.85670	7.21810	5.86190	HepG2	LARP4
RP11-22B23.1	ENSG00000111788.9	462.57030	272.01210	0.76590	5.38320	4.47610	HepG2	MAGOH
RP11-22B23.1	ENSG00000111788.9	235.43430	403.41960	-0.77700	3.27710	2.13200	HepG2	METAP2
RP11-22B23.1	ENSG00000111788.9	403.74260	657.51820	-0.70360	7.03710	5.80530	HepG2	MSI2
RP11-22B23.1	ENSG00000111788.9	848.02970	570.06200	0.57290	4.70340	3.73680	HepG2	NSUN2
RP11-22B23.1	ENSG00000111788.9	146.42170	259.42690	-0.82520	3.46960	2.46750	HepG2	PABPC1
RP11-22B23.1	ENSG00000111788.9	378.15500	263.37520	0.52180	3.87780	3.18500	HepG2	PCBP1
RP11-22B23.1	ENSG00000111788.9	518.10730	625.85690	-0.27260	2.13140	1.59740	HepG2	PUM1
RP11-22B23.1	ENSG00000111788.9	476.96980	625.39980	-0.39090	2.77320	2.10190	HepG2	PUM2
RP11-22B23.1	ENSG00000111788.9	386.71530	586.00680	-0.59960	6.95440	6.05430	HepG2	PUS1
RP11-22B23.1	ENSG00000111788.9	206.09640	397.36350	-0.94710	4.82850	3.91210	HepG2	RAVER1
RP11-22B23.1	ENSG00000111788.9	663.89760	934.17620	-0.49270	4.96960	3.86270	HepG2	RBM15
RP11-22B23.1	ENSG00000111788.9	339.91100	712.91310	-1.06860	17.53890	16.46460	HepG2	RBM22
RP11-22B23.1	ENSG00000111788.9	617.45530	298.25700	1.04970	15.32860	14.24900	HepG2	NELFE
RP11-22B23.1	ENSG00000111788.9	566.40810	277.81350	1.02760	14.67960	13.43330	HepG2	RECQL
RP11-22B23.1	ENSG00000111788.9	191.19440	375.06680	-0.97210	8.58060	7.57020	HepG2	RPS19
RP11-22B23.1	ENSG00000111788.9	164.96400	257.41620	-0.64200	3.05490	2.23520	HepG2	RRP9
RP11-22B23.1	ENSG00000111788.9	471.76110	349.40960	0.43300	3.44660	2.74200	HepG2	SAFB2
RP11-22B23.1	ENSG00000111788.9	269.47660	376.44040	-0.48230	2.39570	1.51910	HepG2	SERBP1
RP11-22B23.1	ENSG00000111788.9	678.43830	948.14850	-0.48290	2.83990	2.15610	HepG2	SF3A3
RP11-22B23.1	ENSG00000111788.9	393.50250	636.29010	-0.69330	6.12600	5.11040	HepG2	SF3B1
RP11-22B23.1	ENSG00000111788.9	320.09610	407.46580	-0.34820	1.90360	1.35330	HepG2	SMN1
RP11-22B23.1	ENSG00000111788.9	450.45790	707.99370	-0.65230	3.60530	2.70940	HepG2	SNRNP70
RP11-22B23.1	ENSG00000111788.9	256.20010	805.18930	-1.65210	44.58470	43.20750	HepG2	SRFBP1
RP11-22B23.1	ENSG00000111788.9	374.41990	291.23190	0.36240	1.97480	1.55660	HepG2	SRSF1
RP11-22B23.1	ENSG00000111788.9	413.22430	582.11660	-0.49440	4.55000	3.78160	HepG2	SRSF5
RP11-22B23.1	ENSG00000111788.9	386.63840	498.93500	-0.36790	2.71740	2.02740	HepG2	SRSF7
RP11-22B23.1	ENSG00000111788.9	924.23710	699.06030	0.40270	4.50100	3.87880	HepG2	SSB
RP11-22B23.1	ENSG00000111788.9	226.10410	371.35600	-0.71580	3.37340	2.03820	HepG2	SUB1
RP11-22B23.1	ENSG00000111788.9	518.86180	662.02700	-0.35150	3.07640	2.42730	HepG2	SUCLG1
RP11-22B23.1	ENSG00000111788.9	179.20990	335.96880	-0.90670	6.13970	5.19160	HepG2	SUPV3L1
RP11-22B23.1	ENSG00000111788.9	474.69670	261.80790	0.85840	9.61940	8.67530	HepG2	TAF15
RP11-22B23.1	ENSG00000111788.9	438.31560	626.72170	-0.51590	2.82870	2.09700	HepG2	TARDBP
RP11-22B23.1	ENSG00000111788.9	131.81860	225.16310	-0.77240	4.06470	2.88540	HepG2	TFIP11
RP11-22B23.1	ENSG00000111788.9	315.43870	240.52620	0.39110	2.03790	1.31810	HepG2	TIA1
RP11-22B23.1	ENSG00000111788.9	475.80850	381.23140	0.31960	1.87840	1.44900	HepG2	TIAL1
RP11-22B23.1	ENSG00000111788.9	359.34580	198.43910	0.85660	4.72660	3.72990	HepG2	UCHL5
RP11-22B23.1	ENSG00000111788.9	375.87100	840.85960	-1.16160	26.87190	25.15770	HepG2	UPF1
RP11-22B23.1	ENSG00000111788.9	492.70070	307.53660	0.67990	2.92440	1.89270	HepG2	UPF2
RP11-22B23.1	ENSG00000111788.9	618.34710	864.31000	-0.48310	5.59940	4.15460	HepG2	UTP18
RP11-22B23.1	ENSG00000111788.9	490.28330	811.82180	-0.72750	11.01890	9.95100	HepG2	UTP3
RP11-22B23.1	ENSG00000111788.9	536.27160	330.72570	0.69720	4.11290	3.23700	HepG2	XRN2
RP11-22B23.1	ENSG00000111788.9	272.46990	924.78910	-1.76300	62.21020	60.50760	HepG2	ZNF622
RP11-22B23.1	ENSG00000111788.9	505.78730	696.06430	-0.46070	3.39930	2.67350	K562	AKAP8L
RP11-22B23.1	ENSG00000111788.9	277.75840	651.37520	-1.22970	15.37370	14.14340	K562	AQR
RP11-22B23.1	ENSG00000111788.9	266.79050	456.81050	-0.77590	5.82410	4.54430	K562	BOP1
RP11-22B23.1	ENSG00000111788.9	317.96370	452.13460	-0.50790	2.73180	1.32790	K562	BUD13
RP11-22B23.1	ENSG00000111788.9	605.72170	799.43040	-0.40030	3.30860	2.00440	K562	CCDC124
RP11-22B23.1	ENSG00000111788.9	618.25060	921.01870	-0.57500	2.45770	1.46720	K562	CNOT7
RP11-22B23.1	ENSG00000111788.9	307.59970	485.72310	-0.65910	5.46270	4.36810	K562	CPSF6
RP11-22B23.1	ENSG00000111788.9	309.87060	494.20700	-0.67340	5.05880	3.89630	K562	FMR1
RP11-22B23.1	ENSG00000111788.9	287.45240	418.88290	-0.54320	3.21250	2.22060	K562	FTO
RP11-22B23.1	ENSG00000111788.9	284.44110	463.74800	-0.70520	5.46290	4.35320	K562	GPKOW
RP11-22B23.1	ENSG00000111788.9	510.73700	678.16670	-0.40910	2.79240	2.03380	K562	GRSF1
RP11-22B23.1	ENSG00000111788.9	250.13530	395.97780	-0.66270	3.29020	2.26280	K562	KRR1
RP11-22B23.1	ENSG00000111788.9	482.71600	580.79000	-0.26680	1.97240	1.32910	K562	NSUN2
RP11-22B23.1	ENSG00000111788.9	588.25320	387.91030	0.60060	3.62610	1.91340	K562	NUSAP1
RP11-22B23.1	ENSG00000111788.9	548.14170	884.82530	-0.69080	3.22390	1.87550	K562	PABPC1
RP11-22B23.1	ENSG00000111788.9	342.79910	558.96270	-0.70540	5.26130	4.11130	K562	PCBP3
RP11-22B23.1	ENSG00000111788.9	295.66720	428.72630	-0.53610	3.91080	2.95240	K562	POLR2G
RP11-22B23.1	ENSG00000111788.9	385.06130	529.74290	-0.46020	2.88600	2.04640	K562	PPIG
RP11-22B23.1	ENSG00000111788.9	564.67820	353.40740	0.67600	2.64890	1.76830	K562	PSIP1
RP11-22B23.1	ENSG00000111788.9	685.85070	897.09280	-0.38740	3.07020	2.21180	K562	PUF60
RP11-22B23.1	ENSG00000111788.9	446.42970	322.24280	0.47020	2.36030	1.44900	K562	RCC2
RP11-22B23.1	ENSG00000111788.9	190.65750	316.28230	-0.73020	3.75510	2.18640	K562	RRP9
RP11-22B23.1	ENSG00000111788.9	454.51100	573.01870	-0.33430	2.39480	1.63170	K562	SF3A3
RP11-22B23.1	ENSG00000111788.9	524.65890	695.78900	-0.40730	3.60890	2.15000	K562	TROVE2
RP11-22B23.1	ENSG00000111788.9	467.87050	733.86450	-0.64940	6.59380	5.17190	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-22B23.1 is not available on ENCORE database.

7 RBPs can affect the splicing of RP11-22B23.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9446625	9446842	9446257	9446506	9447027	9447114	-0.73800	0.00199	0.03630	excluded	K562	SRSF1
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9446625	9446842	9446257	9446506	9447027	9447114	-0.29400	0.00029	0.00730	excluded	HepG2	U2AF1
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9465212	9465291	9464326	9464427	9465470	9465625	-0.26800	0.01026	0.08288	excluded	K562	AQR
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9446625	9446842	9446257	9446506	9447027	9447114	-0.48800	0.00246	0.07770	excluded	K562	FXR1
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9447412	9447570	9447027	9447114	9450376	9450422	-0.14500	0.00238	0.03464	excluded	K562	PUS1
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9446625	9446842	9446257	9446506	9447027	9447114	-0.56800	0.00500	0.08129	excluded	K562	U2AF1
SE	RP11-22B23.1	ENSG00000111788.9	chr12	+	9465212	9465291	9464326	9464427	9465470	9465625	-0.24000	0.00238	0.05986	excluded	HepG2	SF3A3
A5SS	RP11-22B23.1	ENSG00000111788.9	chr12	+	9436244	9436492	9436244	9436370	9440797	9440945	0.77800	0.00000	0.00100	longer	K562	BUD13

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-22B23.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-22B23.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-22B23.1 is not avaliable on ENCORE database.

10 proteins are bound to RP11-22B23.1 RNA:

eCLIP assay for RP11-22B23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-22B23.1 is not available on ENCORE database.

97 RBPs can affect the gene expression of RP11-22B23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-22B23.1 is not available on ENCORE database.

7 RBPs can affect the splicing of RP11-22B23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-22B23.1 is not avaliable on ENCORE database.