RNF145

General Information

Gene Name       : RNF145
Gene ID             : ENSG00000145860.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF145)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF145ENSG00000145860.1147.3539.5143.43ENCSR000AEF
HepG2RNF145ENSG00000145860.1119.2328.5023.87ENCSR985KAT
K562RNF145ENSG00000145860.1125.5425.6025.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF145 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF145 RNA is bound by 30 proteins.  







eCLIP assay for RNF145 is not avaliable on ENCORE database.





30 proteins are bound to RNF145 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5158584920158584979-3'-UTR,intron-Distal3.677053.68079HepG2FUBP3
chr5158584872158585000-3'-UTR,intron-Distal3.350733.91655K562CPSF6
chr5158584806158584849-3'-UTR,intron-Distal,intron-Proximal4.529825.84664K562PUM2
chr5158584447158584501-3'-UTR,intron-Distal4.912965.17743K562ZC3H11A
chr5158584545158584652-3'-UTR,intron-Distal3.145504.74382K562DDX6
chr5158585230158585336-3'-UTR,intron-Distal,intron-Proximal3.287976.54511K562UCHL5
chr5158636244158636315-5'-UTR,intron-Distal6.3308710.46216HepG2DDX3X
chr5158636315158636381-5'-UTR,intron-Distal5.034267.46114HepG2DDX3X
chr5158636396158636531-5'-UTR,intron-Distal4.2937511.88306HepG2DDX3X
chr5158634882158634948-5'-UTR,CDS,intron-Distal,intron-Proximal4.830576.19745HepG2HNRNPM
chr5158636446158636511-5'-UTR,intron-Distal4.528933.47325K562DDX3X
chr5158588458158588536-CDS,intron-Distal,intron-Proximal5.5171112.14650K562RBM15
chr5158586025158586052-CDS,intron-Distal,intron-Proximal5.187104.14692K562GPKOW
chr5158588201158588281-CDS,intron-Distal,intron-Proximal3.075743.78727K562PRPF8
chr5158621682158621732-CDS,intron-Distal,intron-Proximal3.9565017.69962K562PRPF8
chr5158630483158630494-CDS,intron-Distal5.3452517.42985K562PABPC4
chr5158621794158621853-CDS,intron-Distal,intron-Proximal4.5556120.14498K562SF3B4
chr5158596781158596836-CDS,intron-Distal,intron-Proximal3.841757.61895K562U2AF1
chr5158586009158586051-CDS,intron-Distal,intron-Proximal3.220364.56061K562BUD13
chr5158585809158585857-CDS,intron-Distal,intron-Proximal3.618884.80676K562RBM15
chr5158590058158590143-CDS,intron-Distal,intron-Proximal6.0913912.80845K562SF3B4
chr5158600948158601009-CDS,intron-Distal,intron-Proximal4.483345.89229K562EFTUD2
chr5158589980158590030-CDS,intron-Distal4.212074.23889K562TIA1
chr5158609012158609061-CDS,intron-Distal,intron-Proximal4.114534.07830K562SRSF1
chr5158609015158609069-CDS,intron-Distal,intron-Proximal4.048888.28159K562SF3B4
chr5158630358158630444-CDS,intron-Distal,intron-Proximal4.892646.16999K562TIA1
chr5158621771158621845-CDS,intron-Distal,intron-Proximal3.439684.28417K562U2AF2
chr5158596752158596850-CDS,intron-Distal,intron-Proximal3.5869110.54260K562U2AF2
chr5158601005158601102-CDS,intron-Distal,intron-Proximal4.069213.09815K562IGF2BP1
chr5158588180158588283-CDS,intron-Distal,intron-Proximal4.345427.23765K562GPKOW
chr5158630444158630483-CDS,intron-Distal4.4402618.86211K562PABPC4
chr5158621698158621767-CDS,intron-Distal,intron-Proximal4.315223.86479HepG2PRPF8
chr5158621612158621682-intron-Distal,intron-Proximal3.352167.07647K562PRPF8
chr5158630320158630416-intron-Distal,intron-Proximal4.036084.75394K562RBM22
chr5158600824158600909-intron-Distal,intron-Proximal3.647136.41318K562EFTUD2
chr5158625935158625996-intron-Distal3.436974.17049K562TARDBP
chr5158621853158621886-intron-Distal,intron-Proximal6.0986412.01365K562SF3B4
chr5158635663158635765-intron-Distal3.288885.74528K562MATR3
chr5158630295158630382-intron-Distal,intron-Proximal3.983945.64238K562PRPF8
chr5158617112158617211-intron-Distal3.468933.96925HepG2ILF3
chr5158635662158635774-intron-Distal4.408949.71578K562PTBP1
chr5158635425158635529-intron-Distal5.174867.79030HepG2PCBP2
chr5158629664158629777-intron-Distal3.275939.60757K562KHSRP
chr5158636033158636131-intron-Distal3.727567.34197K562HNRNPK
chr5158629586158629630-intron-Distal3.103926.62024K562KHSRP
chr5158623897158624001-intron-Distal4.134778.23540K562TARDBP
chr5158621061158621156-intron-Distal3.852613.22972K562TARDBP
chr5158635871158635917-intron-Distal4.418903.33442K562HNRNPK
chr5158635957158636026-intron-Distal4.570184.42259HepG2DDX59
chr5158635911158636011-intron-Distal4.371784.58231HepG2HNRNPK
chr5158613550158613645-intron-Distal3.447354.90204K562TARDBP
chr5158633453158633500-intron-Distal3.638553.02234K562KHSRP
chr5158636179158636239-intron-Distal4.708594.13847K562AQR
chr5158635453158635522-intron-Distal5.056965.78562K562HNRNPK
chr5158591447158591504-intron-Distal4.5519512.23779K562KHSRP
chr5158588197158588274-intron-Distal,intron-Proximal3.312115.81258K562AQR
chr5158591504158591606-intron-Distal4.0967512.08764K562KHSRP
chr5158635656158635770-intron-Distal3.326014.00631HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF145 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF145 is not available on ENCORE database.

  • 104 RBPs can affect the levels of RNF145.  








The Knockdown/knockout RNA-Seq assay for RNF145 is not available on ENCORE database.





104 RBPs can affect the gene expression of RNF145 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF145ENSG00000145860.71103.66140688.736800.680208.030206.31500HepG2AATF
RNF145ENSG00000145860.71073.26890808.470800.408605.458804.66110HepG2ACO1
RNF145ENSG00000145860.71556.969701302.979700.256802.817202.12560HepG2AUH
RNF145ENSG00000145860.7400.81210645.66480-0.687906.129505.27900HepG2BOP1
RNF145ENSG00000145860.71724.210101144.675800.590904.605503.33380HepG2CCAR1
RNF145ENSG00000145860.71444.732101244.061700.215601.885001.33610HepG2CELF1
RNF145ENSG00000145860.7449.02400677.91920-0.594304.247902.53610HepG2DDX28
RNF145ENSG00000145860.7528.44950723.37090-0.453003.202702.12250HepG2DDX5
RNF145ENSG00000145860.71841.691001045.847300.816309.320708.25910HepG2DDX6
RNF145ENSG00000145860.7581.71080773.45910-0.411003.968303.18620HepG2DKC1
RNF145ENSG00000145860.7572.99030773.48310-0.432905.265704.41110HepG2DNAJC2
RNF145ENSG00000145860.7718.255301005.53240-0.485403.597102.92500HepG2EIF2S1
RNF145ENSG00000145860.7530.16070717.50990-0.436603.481302.28750HepG2EIF3G
RNF145ENSG00000145860.7490.911701111.29620-1.1787015.5378014.03890HepG2EIF4A3
RNF145ENSG00000145860.72069.244601081.879200.935509.826408.56830HepG2EIF4B
RNF145ENSG00000145860.71026.699001319.69960-0.362203.938802.97140HepG2EIF4G1
RNF145ENSG00000145860.7947.117001264.19310-0.416603.488602.58210HepG2EIF4G2
RNF145ENSG00000145860.71400.78600826.983400.760207.653606.44010HepG2FIP1L1
RNF145ENSG00000145860.71345.636901040.046300.371502.447101.81920HepG2G3BP1
RNF145ENSG00000145860.7953.16990771.791500.304403.029402.01140HepG2HDGF
RNF145ENSG00000145860.7667.533701144.50220-0.777806.384604.24200HepG2HNRNPA0
RNF145ENSG00000145860.7458.45060787.86030-0.781208.500107.45870HepG2HNRNPA1
RNF145ENSG00000145860.7882.852801229.37360-0.477706.848005.49250HepG2HNRNPA2B1
RNF145ENSG00000145860.7814.336001172.35140-0.525703.388101.69910HepG2HNRNPD
RNF145ENSG00000145860.7532.22110831.54340-0.643808.144406.99540HepG2HNRNPF
RNF145ENSG00000145860.7759.28500570.629700.412003.260702.23590HepG2HNRNPM
RNF145ENSG00000145860.7474.43530818.83330-0.7874010.669609.33710HepG2IGF2BP1
RNF145ENSG00000145860.7580.244301057.22100-0.8655010.123008.91800HepG2IGF2BP2
RNF145ENSG00000145860.7704.44810889.24060-0.336103.830902.98170HepG2ILF2
RNF145ENSG00000145860.71180.51990881.276200.421702.502701.32420HepG2KRR1
RNF145ENSG00000145860.7915.040401208.56000-0.401402.372101.60700HepG2LARP4
RNF145ENSG00000145860.7861.284801121.44580-0.380802.448301.83030HepG2MAGOH
RNF145ENSG00000145860.7521.72230728.98220-0.482603.496801.90030HepG2NIP7
RNF145ENSG00000145860.7548.29160835.80430-0.608203.804802.13380HepG2NKRF
RNF145ENSG00000145860.71799.249101326.464700.439705.839804.73580HepG2NOL12
RNF145ENSG00000145860.71043.05110861.701500.275402.533801.71970HepG2PARN
RNF145ENSG00000145860.7831.674101032.46510-0.312003.085302.45030HepG2PCBP1
RNF145ENSG00000145860.7605.83300841.70410-0.474402.451601.47260HepG2PCBP2
RNF145ENSG00000145860.7539.03350776.46340-0.526505.898804.85320HepG2PPIL4
RNF145ENSG00000145860.7466.22240570.08440-0.290201.980601.31850HepG2PRPF4
RNF145ENSG00000145860.71026.300601266.21710-0.303102.322501.76970HepG2PUF60
RNF145ENSG00000145860.71127.370901344.13420-0.253703.125502.50490HepG2PUM1
RNF145ENSG00000145860.7653.48930823.46390-0.333503.315402.65650HepG2PUS1
RNF145ENSG00000145860.72042.687101137.785200.8441019.4211017.97690HepG2QKI
RNF145ENSG00000145860.72106.00930812.338101.3743014.3894012.89830HepG2RAVER1
RNF145ENSG00000145860.7912.239201169.18830-0.358003.891303.27020HepG2NELFE
RNF145ENSG00000145860.7498.86960895.76980-0.8445010.787809.59020HepG2RPLP0
RNF145ENSG00000145860.7597.869801359.09040-1.1847014.3950012.62960HepG2RPS3A
RNF145ENSG00000145860.71204.78980915.175100.396603.233802.06630HepG2RPS5
RNF145ENSG00000145860.7633.71010775.26700-0.290902.539401.91780HepG2SAFB2
RNF145ENSG00000145860.71318.15240603.976601.1259013.2749011.73300HepG2SF3A3
RNF145ENSG00000145860.7454.77300634.75400-0.481103.202102.44570HepG2SF3B1
RNF145ENSG00000145860.71313.548001093.773700.264102.632802.05330HepG2SF3B4
RNF145ENSG00000145860.7858.166601214.08190-0.500508.610607.48070HepG2SLBP
RNF145ENSG00000145860.72112.908701412.271800.5811014.2353013.33400HepG2SRFBP1
RNF145ENSG00000145860.7651.779301141.66990-0.8087016.4140015.46740HepG2SRSF1
RNF145ENSG00000145860.7747.067301250.19150-0.7428015.2845013.98160HepG2SRSF5
RNF145ENSG00000145860.7485.60810816.96250-0.7505012.1115010.83370HepG2SRSF7
RNF145ENSG00000145860.71271.17530928.815300.452604.446703.77810HepG2SRSF9
RNF145ENSG00000145860.7878.210201226.14990-0.481507.574306.80750HepG2SSB
RNF145ENSG00000145860.71157.91680878.564300.398202.585701.34500HepG2SSRP1
RNF145ENSG00000145860.7421.08530558.48240-0.407402.566501.66030HepG2SUPT6H
RNF145ENSG00000145860.7471.62840890.70470-0.917308.259007.19210HepG2SUPV3L1
RNF145ENSG00000145860.71669.678401026.196800.7022013.9059012.79200HepG2TAF15
RNF145ENSG00000145860.7413.34410597.04760-0.530502.753501.76030HepG2TFIP11
RNF145ENSG00000145860.71271.19730942.914500.430904.645403.57010HepG2TIA1
RNF145ENSG00000145860.7486.58940845.91630-0.7978011.5419010.64540HepG2TIAL1
RNF145ENSG00000145860.7691.65770853.46490-0.303302.763502.19950HepG2TRIM56
RNF145ENSG00000145860.7857.853001237.02220-0.528106.032504.67700HepG2TUFM
RNF145ENSG00000145860.7663.30150526.210900.333902.072501.41480HepG2UCHL5
RNF145ENSG00000145860.7511.81240815.78320-0.672603.638602.47600HepG2UPF2
RNF145ENSG00000145860.71165.97930517.132901.1728032.7339031.02280HepG2UTP3
RNF145ENSG00000145860.7841.751301217.34210-0.532303.454202.21950HepG2XPO5
RNF145ENSG00000145860.7519.92160876.79920-0.754006.453305.36120HepG2XRN2
RNF145ENSG00000145860.7740.35270589.095000.329602.411801.89100HepG2ZNF622
RNF145ENSG00000145860.71893.056801141.948700.7291018.1886016.85460K562AGGF1
RNF145ENSG00000145860.71737.161401254.778000.469204.721403.35470K562AKAP8
RNF145ENSG00000145860.72033.046301188.236800.7747012.6187011.08030K562AKAP8L
RNF145ENSG00000145860.72935.269002072.604300.501905.915105.11370K562AQR
RNF145ENSG00000145860.71765.832901246.722800.502107.685206.04460K562ATP5C1
RNF145ENSG00000145860.7738.569101055.68270-0.515405.667704.55340K562CPSF6
RNF145ENSG00000145860.72028.332101469.811700.464606.470305.53180K562DDX47
RNF145ENSG00000145860.71638.547901278.706600.357604.343303.21290K562DKC1
RNF145ENSG00000145860.71166.578601662.26600-0.510902.784002.06320K562EIF2S2
RNF145ENSG00000145860.73424.028002254.676300.6027015.7890013.65680K562EIF4G2
RNF145ENSG00000145860.71753.694201047.020800.7440015.2543013.94360K562FXR1
RNF145ENSG00000145860.71406.244101066.087000.399402.280501.64650K562G3BP2
RNF145ENSG00000145860.71563.683301010.766300.629402.693701.49630K562HNRNPA2B1
RNF145ENSG00000145860.71258.77510823.445200.612207.633606.68880K562HNRNPC
RNF145ENSG00000145860.71425.063901091.373800.384802.581901.68600K562HNRNPM
RNF145ENSG00000145860.7997.617401336.37290-0.421802.850701.80560K562IGF2BP2
RNF145ENSG00000145860.72161.160201261.060200.777107.796906.23760K562KIF1C
RNF145ENSG00000145860.71733.044301207.109300.521704.054302.67550K562MAK16
RNF145ENSG00000145860.71977.766001412.699900.485304.745503.49020K562MBNL1
RNF145ENSG00000145860.7645.24920983.81360-0.608506.624705.24060K562METAP2
RNF145ENSG00000145860.71782.24720990.196400.847808.629106.72450K562NAA15
RNF145ENSG00000145860.71462.210201043.577200.486503.007502.14080K562PCBP3
RNF145ENSG00000145860.71079.11490800.471400.430802.270801.54460K562POLR2G
RNF145ENSG00000145860.71695.900201010.432300.747009.234607.85850K562PRPF8
RNF145ENSG00000145860.7504.00520738.29400-0.550804.152403.01350K562PSIP1
RNF145ENSG00000145860.71098.608101364.87460-0.313102.708202.05070K562PTBP1
RNF145ENSG00000145860.73282.540302460.094900.416005.445004.30220K562PUF60
RNF145ENSG00000145860.72046.032102616.18040-0.354603.680002.43710K562PUM1
RNF145ENSG00000145860.72597.039601178.494701.1398023.1629021.60940K562PUS1
RNF145ENSG00000145860.72196.022701148.191100.9354014.5347013.16340K562RBM15
RNF145ENSG00000145860.71070.927901308.95810-0.289602.029101.31420K562RBM22
RNF145ENSG00000145860.7521.39200673.54510-0.369402.586901.63240K562RCC2
RNF145ENSG00000145860.71522.895801152.561600.401904.945003.88210K562SF3A3
RNF145ENSG00000145860.71692.90560928.567500.866304.288402.65070K562SNRNP200
RNF145ENSG00000145860.7471.18650638.50820-0.438402.890301.83510K562SRFBP1
RNF145ENSG00000145860.71429.688801180.810400.275803.217802.21560K562SRPK2
RNF145ENSG00000145860.7762.859601337.98970-0.8106013.2324011.68640K562SRSF1
RNF145ENSG00000145860.71183.12680802.876900.559307.064705.73540K562SYNCRIP
RNF145ENSG00000145860.71000.369801306.27820-0.384903.710702.74440K562TIA1
RNF145ENSG00000145860.71857.754901102.075500.7532022.0866020.04440K562WDR43
RNF145ENSG00000145860.73142.950002455.287700.356103.780302.26240K562WRN
RNF145ENSG00000145860.7681.732601054.26270-0.629002.630201.46040K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF145 is not available on ENCORE database.





3 RBPs can affect the splicing of RNF145 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF145ENSG00000145860.7chr5-158595880158596063158589939158590087158596686158596827-0.077000.000200.00306excludedK562AQR
SERNF145ENSG00000145860.7chr5-158600990158601226158596686158596827158603639158603875-0.097000.012280.09553excludedK562AQR
A3SSRNF145ENSG00000145860.7chr5-1585966861585969101585966861585968271586009901586011660.119000.000000.00000longerK562AQR
A3SSRNF145ENSG00000145860.7chr5-1585966861585969101585966861585968271586009901586011660.073000.000090.07174longerK562ZC3H8
MXERNF145ENSG00000145860.7chr5-1586036391586038751586089671586090591586009901586011661586217231586218320.215000.000010.000741includedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF145 is not avaliable on ENCORE database.