NCBP1

General Information

Gene Name       : NCBP1
Gene ID             : ENSG00000136937.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NCBP1)


Antibody Validation

 View validation images for all NCBP1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NCBP1ENSG00000136937.1227.7525.8526.80ENCSR000AEF
HepG2NCBP1ENSG00000136937.1221.2830.0025.64ENCSR985KAT
K562NCBP1ENSG00000136937.1240.2143.4841.84ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq NCBP1-BGKcLV11-K562ENCSR090SBZNCBP1K562ReleasedENCSR292PXV   CRISPRKD% = 64.6,66.5
knockdown followed by RNA-seq NCBP1-BGHcLV10-HepG2ENCSR324GSINCBP1HepG2ReleasedENCSR775ZWO   CRISPRKD% = 60.2,54.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
NCBP1ENCAB987FLCRN103PW1Released, ENCODE3BGHcLV10-25, Released, ENCODE4BGKcLV11-61, Released, ENCODE4
NCBP124964S1Released, ENCODE3Submitted, ENCORE2BGHcLV10-25, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NCBP1K562CRISPRBGKcLV11-59,BGKcLV11-60BGKcLV11-1,BGKcLV11-256.7,62.3NotSatisfiedENCODE4
NCBP1K562CRISPRENCSR090SBZENCSR292PXVNCBP1-BGKcLV11-61,NCBP1-BGKcLV11-62NT-BGKcLV11-1,NT-BGKcLV11-264.6,66.5ReleasedENCODE4
NCBP1K562CRISPRBGKcLV11-63,BGKcLV11-64BGKcLV11-1,BGKcLV11-234.4,56.0NotSatisfiedENCODE4
NCBP1HepG2CRISPRENCSR324GSIENCSR775ZWONCBP1-BGHcLV10-25,NCBP1-BGHcLV10-26NT-BGHcLV10-1,NT-BGHcLV10-260.2,54.4ReleasedENCODE4
NCBP1HepG2CRISPRBGHcLV10-27,BGHcLV10-28BGHcLV10-1,BGHcLV10-248.1,53.8NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
NCBP1Product_ID: RN103PW
Lot_ID: 1
Source: MBLI
Target Name: NCBP1-human		 HepG2_MBLI_RN103PW_001_NCBP1.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using NCBP1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-NCBP1 antibody (lanes under 'NCBP1').
 NCBP1-HEPG2-CRISPR.png<br>Caption: Western blot following CRISPR against NCBP1 in HepG2 whole cell lysate using NCBP1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against NCBP1.NCBP1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
 NCBP1-K562-CRISPR.png<br>Caption: Western blot following CRISPR against NCBP1 in K562 whole cell lysate using NCBP1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against NCBP1. NCBP1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
NCBP1Product_ID: 24964S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: NCBP1-human		 CST_24964S_1_NCBP1.png<br>Caption: IP-WB analysis of 24964S whole cell lysate using the NCBP1 specific antibody, 24964S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the NCBP1-specific antibody, 24964S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for NCBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NCBP1 RNA is bound by 20 proteins.  







eCLIP assay for NCBP1 is not avaliable on ENCORE database.





20 proteins are bound to NCBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9100410292100410343+3'-UTR,CDS3.882006.08299HepG2PPIG
chr9100435097100435156+3'-UTR,intron-Proximal4.219554.15622HepG2TIAL1
chr9100434758100434890+3'-UTR3.525554.76825K562KHSRP
chr9100433540100433584+3'-UTR3.507353.94497HepG2SUB1
chr9100434204100434226+3'-UTR4.425394.01524K562FAM120A
chr9100434942100435004+3'-UTR5.055256.50173HepG2U2AF2
chr9100435532100435671+3'-UTR,intron-Distal4.0717210.92054K562UPF1
chr9100433539100433611+3'-UTR4.284949.94910K562KHSRP
chr9100433546100433654+3'-UTR3.042143.90555K562TIA1
chr9100396076100396198+5'-UTR,CDS,intron-Proximal4.6956710.17596K562DDX3X
chr9100395978100396093+5'-UTR3.619634.78507K562FXR2
chr9100416098100416123+CDS3.032166.64273K562YBX3
chr9100403149100403164+CDS3.398693.86355HepG2PPIG
chr9100431953100432028+CDS,intron-Proximal3.982467.02084HepG2PRPF8
chr9100418006100418047+CDS,intron-Proximal3.635664.22917HepG2PPIG
chr9100403943100403969+CDS,intron-Proximal5.464547.63570K562AQR
chr9100431874100431881+CDS,intron-Proximal4.221644.31428K562YBX3
chr9100418292100418307+CDS,intron-Proximal4.562484.08604HepG2PPIG
chr9100418015100418040+CDS3.098873.02345K562ZNF622
chr9100431881100431923+CDS6.0809817.94432K562YBX3
chr9100403843100403909+CDS,intron-Proximal3.713803.22245K562GRWD1
chr9100403842100403938+CDS,intron-Proximal3.637457.21479K562UCHL5
chr9100429044100429055+CDS,intron-Proximal4.261623.38968HepG2BCLAF1
chr9100416123100416145+CDS3.582708.28018K562YBX3
chr9100431927100431976+CDS3.760343.34184HepG2GRWD1
chr9100426702100426725+CDS4.650845.23259HepG2BCLAF1
chr9100413604100413652+CDS3.047453.01994K562BUD13
chr9100403842100403875+CDS,intron-Proximal4.764125.03746HepG2BCLAF1
chr9100403842100403892+CDS,intron-Proximal3.571616.20926HepG2PPIG
chr9100431226100431257+CDS,intron-Proximal4.188083.02250K562YBX3
chr9100403151100403165+CDS,intron-Proximal4.241303.89826HepG2BCLAF1
chr9100418396100418511+intron-Distal,intron-Proximal3.699704.76426K562PRPF8
chr9100421238100421332+intron-Distal3.254883.29251K562KHSRP
chr9100407669100407794+intron-Distal,intron-Proximal3.808123.06150K562KHSRP
chr9100403987100404069+intron-Distal,intron-Proximal3.233066.46022K562KHSRP
chr9100403996100404147+intron-Distal,intron-Proximal4.430988.53255K562PRPF8
chr9100421130100421223+intron-Distal4.331494.58794K562KHSRP
chr9100418396100418443+intron-Proximal3.875224.37625HepG2RBM22
chr9100420836100420906+intron-Proximal3.373623.29783HepG2RBM5
chr9100403969100403993+intron-Proximal5.560868.83608K562AQR
chr9100418397100418448+intron-Proximal3.990785.91788K562RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NCBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NCBP1 is not available on ENCORE database.

  • 126 RBPs can affect the levels of NCBP1.  








The Knockdown/knockout RNA-Seq assay for NCBP1 is not available on ENCORE database.





126 RBPs can affect the gene expression of NCBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NCBP1ENSG00000136937.8896.257701132.34560-0.337302.292101.38280HepG2ADAR
NCBP1ENSG00000136937.8854.817801144.68530-0.421302.352501.52620HepG2BCLAF1
NCBP1ENSG00000136937.8890.327801591.02720-0.8375012.9082011.74300HepG2BOP1
NCBP1ENSG00000136937.8695.182701460.67050-1.0712017.8950016.32490HepG2CPSF6
NCBP1ENSG00000136937.8924.227201540.28750-0.7369015.3461014.07460HepG2CELF1
NCBP1ENSG00000136937.81247.311501656.09410-0.409007.280506.16270HepG2DAZAP1
NCBP1ENSG00000136937.8886.030901099.75600-0.311802.241901.36060HepG2DHX30
NCBP1ENSG00000136937.8834.111801140.25770-0.451005.595504.62510HepG2DNAJC21
NCBP1ENSG00000136937.8825.928101130.09610-0.452407.445906.44710HepG2DNAJC2
NCBP1ENSG00000136937.81355.154501049.541500.368601.896901.32000HepG2EIF4B
NCBP1ENSG00000136937.81119.488101565.17520-0.483504.611503.57670HepG2EIF4G2
NCBP1ENSG00000136937.81584.109301966.18340-0.311703.747003.06460HepG2ETF1
NCBP1ENSG00000136937.8872.200501463.13070-0.746303.165302.07620HepG2FTO
NCBP1ENSG00000136937.8723.949101075.15860-0.570605.062603.67950HepG2GNB2L1
NCBP1ENSG00000136937.81117.204601655.84090-0.567705.090404.23890HepG2GPKOW
NCBP1ENSG00000136937.8840.264001151.18070-0.454204.218503.44330HepG2HNRNPA1
NCBP1ENSG00000136937.8578.820201280.44490-1.1455020.7592019.04510HepG2HNRNPC
NCBP1ENSG00000136937.8963.509701435.14770-0.574807.863106.73300HepG2HNRNPF
NCBP1ENSG00000136937.8897.581101508.54680-0.7490020.3276018.66410HepG2HNRNPL
NCBP1ENSG00000136937.8811.936101580.19430-0.9607014.3879013.10760HepG2HNRNPLL
NCBP1ENSG00000136937.8958.504201271.98160-0.408205.857005.00280HepG2HNRNPU
NCBP1ENSG00000136937.81045.895701413.19410-0.434205.267004.30130HepG2IGF2BP1
NCBP1ENSG00000136937.81004.551601299.29240-0.371206.121505.07340HepG2ILF2
NCBP1ENSG00000136937.8873.311601097.72900-0.330004.143202.90760HepG2KIF1C
NCBP1ENSG00000136937.82002.253001094.000900.8719010.933209.73950HepG2MATR3
NCBP1ENSG00000136937.81004.641801611.46790-0.681704.816703.51430HepG2MTPAP
NCBP1ENSG00000136937.81209.623701642.18450-0.441105.612404.53320HepG2NOL12
NCBP1ENSG00000136937.81087.108001401.10300-0.366102.679301.94310HepG2NSUN2
NCBP1ENSG00000136937.8402.94030643.54950-0.675503.455102.45560HepG2PABPC1
NCBP1ENSG00000136937.8729.16130997.53630-0.452101.978001.35870HepG2PABPC4
NCBP1ENSG00000136937.81057.993601259.08260-0.251002.397601.60500HepG2PARN
NCBP1ENSG00000136937.8665.916901134.51130-0.7687014.0083012.42270HepG2PPIL4
NCBP1ENSG00000136937.81278.990301016.194800.331703.769503.15280HepG2PTBP1
NCBP1ENSG00000136937.81062.825001513.03480-0.509506.612805.35870HepG2RBM15
NCBP1ENSG00000136937.81266.808601643.37750-0.375504.568203.94600HepG2RBM22
NCBP1ENSG00000136937.8940.206901270.24390-0.434103.542402.41280HepG2RBM27
NCBP1ENSG00000136937.81422.786301130.944800.331103.704303.09620HepG2NELFE
NCBP1ENSG00000136937.8990.687601546.25570-0.642308.784407.67550HepG2RPLP0
NCBP1ENSG00000136937.8843.007601163.54850-0.464902.448301.55920HepG2RPS10
NCBP1ENSG00000136937.8536.58520988.60150-0.881608.321207.05370HepG2RRP9
NCBP1ENSG00000136937.8683.945401132.77400-0.7279015.4017014.06700HepG2SAFB2
NCBP1ENSG00000136937.81858.448101349.994900.461002.813302.13380HepG2SF3A3
NCBP1ENSG00000136937.81487.840801058.027800.491707.747506.83660HepG2SF3B4
NCBP1ENSG00000136937.81262.526901503.17910-0.251702.897302.18080HepG2SLBP
NCBP1ENSG00000136937.81078.668301321.03650-0.292403.785403.05280HepG2SMN1
NCBP1ENSG00000136937.81206.950401740.33840-0.528003.119802.28980HepG2SNRNP70
NCBP1ENSG00000136937.81801.142701104.336500.7056016.9937016.03270HepG2SRSF1
NCBP1ENSG00000136937.8937.784401682.89740-0.843608.789306.91980HepG2SRSF3
NCBP1ENSG00000136937.8714.992701410.04290-0.9797019.5628018.01870HepG2SRSF7
NCBP1ENSG00000136937.81463.059601760.29750-0.266803.501102.81650HepG2SUCLG1
NCBP1ENSG00000136937.8607.39140887.68370-0.547404.927503.69250HepG2SUPT6H
NCBP1ENSG00000136937.8862.064401289.29660-0.580704.178103.37150HepG2SUPV3L1
NCBP1ENSG00000136937.81179.53600992.577800.248901.912801.43180HepG2TAF15
NCBP1ENSG00000136937.8916.125301540.04870-0.7494010.065208.80970HepG2TARDBP
NCBP1ENSG00000136937.8776.562701236.08330-0.6706010.309109.45030HepG2TIAL1
NCBP1ENSG00000136937.8756.205701247.00900-0.7216015.3819014.20220HepG2TRIM56
NCBP1ENSG00000136937.8805.337801124.43870-0.481503.826403.09230HepG2U2AF1
NCBP1ENSG00000136937.8776.401301725.86030-1.152404.045502.84060HepG2U2AF2
NCBP1ENSG00000136937.8779.160101180.85300-0.599803.217102.13290HepG2UPF2
NCBP1ENSG00000136937.81348.563801155.887800.222302.042101.51150HepG2UTP3
NCBP1ENSG00000136937.8877.827301269.16820-0.531903.919303.06470HepG2XRN2
NCBP1ENSG00000136937.8979.875901316.73410-0.426307.359806.57880HepG2ZNF622
NCBP1ENSG00000136937.82639.006802084.171100.340402.643201.49310K562AARS
NCBP1ENSG00000136937.84272.340005402.93780-0.338703.314801.96070K562ABCF1
NCBP1ENSG00000136937.81513.509902745.28730-0.8591012.1282011.03270K562AGGF1
NCBP1ENSG00000136937.81537.100901956.57640-0.348104.719702.70760K562AKAP1
NCBP1ENSG00000136937.81965.995003016.32340-0.617508.069306.14970K562AKAP8
NCBP1ENSG00000136937.81963.194502856.51410-0.541106.351605.33250K562AKAP8L
NCBP1ENSG00000136937.83426.856504822.20000-0.492806.680905.83310K562AQR
NCBP1ENSG00000136937.82471.289102997.01640-0.278302.399001.55340K562ATP5C1
NCBP1ENSG00000136937.82217.410902809.47770-0.341405.971504.54050K562BCLAF1
NCBP1ENSG00000136937.81862.277102931.39580-0.654508.910507.28860K562BOP1
NCBP1ENSG00000136937.81005.425501309.16510-0.380802.917901.83190K562CCAR1
NCBP1ENSG00000136937.81898.751903281.03460-0.7891010.442608.14550K562CCDC124
NCBP1ENSG00000136937.82905.886604491.38940-0.628203.945402.63350K562CNOT7
NCBP1ENSG00000136937.83514.966504319.22160-0.297304.720203.24780K562CPEB4
NCBP1ENSG00000136937.81938.012903116.90710-0.6855013.5353011.78160K562CPSF6
NCBP1ENSG00000136937.81758.009502131.40730-0.277902.890101.81070K562CSTF2
NCBP1ENSG00000136937.84926.970807483.37030-0.603008.866507.16380K562CELF1
NCBP1ENSG00000136937.81674.160502100.52180-0.327304.295002.03910K562DDX24
NCBP1ENSG00000136937.81295.011401982.42770-0.614309.488007.44910K562DDX3X
NCBP1ENSG00000136937.85350.063104469.673500.259304.200703.41960K562DDX47
NCBP1ENSG00000136937.81453.673402009.89130-0.467407.433505.00460K562DDX6
NCBP1ENSG00000136937.81857.957202378.82050-0.356502.133401.33080K562EFTUD2
NCBP1ENSG00000136937.81638.143002177.40470-0.410506.965905.00470K562EIF2S1
NCBP1ENSG00000136937.83051.750703875.68770-0.344805.534904.56930K562EIF2S2
NCBP1ENSG00000136937.81214.505202071.10250-0.7700012.6989010.89540K562EIF4A3
NCBP1ENSG00000136937.81536.284801865.09700-0.279802.940601.74080K562EIF4B
NCBP1ENSG00000136937.84885.357106087.23300-0.317303.084502.09540K562EIF4G2
NCBP1ENSG00000136937.81505.079501807.83280-0.264402.659901.39690K562EWSR1
NCBP1ENSG00000136937.83229.976503883.58890-0.265902.205901.44790K562FIP1L1
NCBP1ENSG00000136937.82124.198203171.39400-0.578207.668406.20130K562FMR1
NCBP1ENSG00000136937.81665.645002688.04890-0.690506.675605.19560K562FTO
NCBP1ENSG00000136937.82823.320802153.851700.390406.358605.49680K562FXR1
NCBP1ENSG00000136937.81712.156202384.87630-0.478103.151901.61490K562GEMIN5
NCBP1ENSG00000136937.82569.004603121.95430-0.281203.438302.16770K562GLRX3
NCBP1ENSG00000136937.82171.148102975.87310-0.454905.541804.42180K562GPKOW
NCBP1ENSG00000136937.83387.786905164.92400-0.6084010.885309.35630K562GRSF1
NCBP1ENSG00000136937.81866.865003380.64520-0.856703.962002.41820K562HNRNPA2B1
NCBP1ENSG00000136937.81006.222002280.77090-1.1806030.5862028.67680K562HNRNPC
NCBP1ENSG00000136937.82691.847704039.27640-0.585509.845607.74780K562HNRNPL
NCBP1ENSG00000136937.82489.365003194.18300-0.359702.746901.82130K562HNRNPM
NCBP1ENSG00000136937.82026.484802614.54910-0.367602.517901.55410K562IGF2BP2
NCBP1ENSG00000136937.82180.652902659.51990-0.286402.390201.30510K562IGF2BP3
NCBP1ENSG00000136937.82323.145503031.76200-0.384103.601002.64420K562KIF1C
NCBP1ENSG00000136937.81509.592802541.04070-0.751307.449005.83330K562KRR1
NCBP1ENSG00000136937.82087.515502748.20730-0.396704.402903.33720K562MAGOH
NCBP1ENSG00000136937.82254.364902901.90980-0.364303.488102.23560K562MAK16
NCBP1ENSG00000136937.82224.236202904.78680-0.385104.243703.14400K562METAP2
NCBP1ENSG00000136937.84930.113106488.60220-0.396303.357002.11140K562MSI2
NCBP1ENSG00000136937.82536.280703282.33230-0.372007.434606.16550K562MTPAP
NCBP1ENSG00000136937.81430.660802068.18200-0.531708.068305.99930K562NCBP2
NCBP1ENSG00000136937.82831.973303646.94120-0.3649010.775509.43570K562NSUN2
NCBP1ENSG00000136937.81728.494502245.45480-0.377502.870801.41270K562NUSAP1
NCBP1ENSG00000136937.81326.624002958.70350-1.157205.875804.27270K562PABPN1
NCBP1ENSG00000136937.82939.548602340.819300.328503.045202.20360K562POLR2G
NCBP1ENSG00000136937.83433.846604408.46230-0.360403.573402.62170K562PPIG
NCBP1ENSG00000136937.81744.133703519.13810-1.012704.739602.65900K562PPP1R8
NCBP1ENSG00000136937.81235.930702044.91710-0.7264010.771008.73260K562PSIP1
NCBP1ENSG00000136937.85200.021506921.96290-0.412704.432803.21260K562PUM2
NCBP1ENSG00000136937.82318.475602833.46320-0.289401.798701.34250K562PUS1
NCBP1ENSG00000136937.82078.849502760.29820-0.409003.642702.97570K562RBM15
NCBP1ENSG00000136937.81923.603202560.46330-0.412604.246503.17850K562RBM22
NCBP1ENSG00000136937.81575.452901981.16800-0.330603.042501.64100K562RBM25
NCBP1ENSG00000136937.81684.696803640.21460-1.111505.456703.09240K562RBM39
NCBP1ENSG00000136937.81357.412001865.56290-0.458805.778304.33770K562RCC2
NCBP1ENSG00000136937.81729.951002367.22800-0.452502.583301.30200K562RRP9
NCBP1ENSG00000136937.82865.350204090.83160-0.513703.025601.43120K562SBDS
NCBP1ENSG00000136937.82870.921503598.63710-0.325905.206304.11280K562SF3A3
NCBP1ENSG00000136937.82033.767103301.14590-0.698802.624601.37100K562SFPQ
NCBP1ENSG00000136937.81142.996101442.08750-0.335302.600301.37910K562SLBP
NCBP1ENSG00000136937.81555.783103107.08320-0.997904.804103.04990K562SNRNP200
NCBP1ENSG00000136937.81376.963201768.52020-0.361103.204002.07990K562SRFBP1
NCBP1ENSG00000136937.82924.516903686.88470-0.334207.514906.05030K562SRPK2
NCBP1ENSG00000136937.82177.776702617.46690-0.265302.387701.72270K562SRSF1
NCBP1ENSG00000136937.81697.504002471.88390-0.542206.603304.86810K562SRSF5
NCBP1ENSG00000136937.81962.757602520.39350-0.360805.556603.88440K562SRSF7
NCBP1ENSG00000136937.81890.020703717.53660-0.975904.646602.62730K562SUPT6H
NCBP1ENSG00000136937.81378.025002241.91390-0.702104.694003.34220K562SUPV3L1
NCBP1ENSG00000136937.83093.909302347.851900.398005.480304.31680K562SYNCRIP
NCBP1ENSG00000136937.81612.908102649.14860-0.7159010.340708.83360K562TARDBP
NCBP1ENSG00000136937.81965.022102555.37640-0.379004.393003.32420K562TIA1
NCBP1ENSG00000136937.81540.288001966.88750-0.352702.569701.67140K562TIAL1
NCBP1ENSG00000136937.81984.972202507.34430-0.337003.053001.89770K562TRA2A
NCBP1ENSG00000136937.81506.359302089.38620-0.472005.332403.91570K562TRIM56
NCBP1ENSG00000136937.83513.111304543.69090-0.371103.540601.93090K562TRIP6
NCBP1ENSG00000136937.83146.138303681.82010-0.226803.411001.99150K562TROVE2
NCBP1ENSG00000136937.81295.385802024.71190-0.644306.569904.73230K562U2AF1
NCBP1ENSG00000136937.81345.382602090.62750-0.635908.930207.47810K562U2AF2
NCBP1ENSG00000136937.83388.605703866.93100-0.190502.550101.85900K562UPF1
NCBP1ENSG00000136937.82021.769502872.24470-0.506602.635501.38160K562UTP18
NCBP1ENSG00000136937.82677.157403462.21740-0.371003.064401.79350K562UTP3
NCBP1ENSG00000136937.82518.720003308.80750-0.393604.816103.64390K562WDR3
NCBP1ENSG00000136937.81790.130902415.33830-0.432202.949701.68930K562XRN2
NCBP1ENSG00000136937.83420.472505432.72420-0.6675011.9596010.01250K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NCBP1 is not available on ENCORE database.





12 RBPs can affect the splicing of NCBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.072000.006600.09131excludedK562SF3B4
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.246000.000000.00000excludedHepG2U2AF1
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.292000.000000.00000excludedHepG2U2AF2
SENCBP1ENSG00000136937.8chr9+100407892100408014100407367100407506100409773100409843-0.083000.000000.00000excludedK562AQR
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.115000.000000.00000excludedK562AQR
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.111000.000000.00005excludedK562PUS1
SENCBP1ENSG00000136937.8chr9+100433367100433505100431874100431988100434949100435063-0.068000.004580.07595excludedK562U2AF1
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.251000.000000.00000excludedK562U2AF1
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.087000.000040.00256excludedK562UTP18
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.187000.000000.00001excludedK562U2AF2
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.097000.000000.00022excludedK562RBM15
SENCBP1ENSG00000136937.8chr9+100413591100413655100412784100412882100416079100416190-0.089000.000060.00291excludedK562AGGF1
A3SSNCBP1ENSG00000136937.8chr9+100417161100417226100417170100417226100416079100416190-0.098000.000030.00323shorterK562SF3B4
A3SSNCBP1ENSG00000136937.8chr9+100410289100410505100410381100410505100409773100409843-0.175000.000070.08637shorterK562PHF6
A5SSNCBP1ENSG00000136937.8chr9+1004038431004039731004038431004039441004054851004056420.052000.000060.03437longerK562NPM1
MXENCBP1ENSG00000136937.8chr9+100409773100409807100409807100409843100407892100408014100410289100410505-0.143000.000000.000002includedK562DROSHA
MXENCBP1ENSG00000136937.8chr9+1004073981004075061004078921004080141004054851004056421004097731004098430.202000.000000.000011includedHepG2U2AF2
MXENCBP1ENSG00000136937.8chr9+100409773100409807100409807100409843100407892100408014100410289100410505-0.184000.000000.000002includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NCBP1 is not avaliable on ENCORE database.