NAB1

General Information

Gene Name       : NAB1
Gene ID             : ENSG00000138386.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NAB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAB1ENSG00000138386.1623.3519.1321.24ENCSR000AEF
HepG2NAB1ENSG00000138386.1617.6328.2922.96ENCSR985KAT
K562NAB1ENSG00000138386.1610.3410.4510.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAB1 RNA is bound by 28 proteins.  







eCLIP assay for NAB1 is not avaliable on ENCORE database.





28 proteins are bound to NAB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2191555454191555543+3'-UTR3.573825.35418HepG2FUBP3
chr2191523868191523951+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.030294.21310K562U2AF1
chr2191523871191523963+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9830510.75098HepG2U2AF2
chr2191557292191557385+3'-UTR3.052594.04616HepG2ZC3H11A
chr2191555376191555436+3'-UTR4.435063.32080HepG2FUBP3
chr2191555105191555235+3'-UTR3.990773.01429K562IGF2BP1
chr2191555164191555253+3'-UTR3.791076.67313HepG2BCLAF1
chr2191514019191514080+5'-UTR,intron-Distal3.457138.18260HepG2GTF2F1
chr2191514045191514076+5'-UTR,intron-Distal3.636647.25168HepG2PRPF4
chr2191513895191513958+5'-UTR,intron-Distal3.7609312.59353HepG2CSTF2T
chr2191513789191513831+5'-UTR,intron-Distal,intron-Proximal5.7713839.40642HepG2FAM120A
chr2191513768191513827+5'-UTR,intron-Distal,intron-Proximal5.064627.38514K562FASTKD2
chr2191513752191513815+5'-UTR,intron-Distal,intron-Proximal4.237974.38582HepG2XRN2
chr2191514018191514043+5'-UTR,intron-Distal3.6794116.96190HepG2CSTF2T
chr2191513760191513858+5'-UTR,intron-Distal,intron-Proximal6.4528320.14891K562GTF2F1
chr2191513771191513848+5'-UTR,intron-Distal,intron-Proximal4.355624.52089HepG2NCBP2
chr2191513912191514004+5'-UTR,intron-Distal3.5397916.54531HepG2DDX3X
chr2191513894191513964+5'-UTR,intron-Distal3.285225.62058K562CSTF2T
chr2191513789191513851+5'-UTR,intron-Distal,intron-Proximal5.4221546.94425HepG2PRPF4
chr2191513889191513950+5'-UTR,intron-Distal5.9906115.73155HepG2FAM120A
chr2191513766191513859+5'-UTR,intron-Distal,intron-Proximal5.2051021.79615HepG2DDX3X
chr2191514013191514065+5'-UTR,intron-Distal3.615114.40109K562AKAP8L
chr2191514006191514088+5'-UTR,intron-Distal,intron-Proximal4.3014213.94050K562CSTF2T
chr2191513905191513971+5'-UTR,intron-Distal3.467655.31818K562GTF2F1
chr2191513965191514070+5'-UTR,intron-Distal3.263946.87283HepG2PCBP2
chr2191514014191514092+5'-UTR,intron-Distal,intron-Proximal4.200156.77154K562NONO
chr2191513740191513824+5'-UTR,intron-Distal,intron-Proximal6.4585620.03256HepG2CSTF2T
chr2191513758191513821+5'-UTR,intron-Distal,intron-Proximal3.726643.36018HepG2FASTKD2
chr2191514004191514085+5'-UTR,intron-Distal3.1505710.54846HepG2DDX3X
chr2191514004191514045+5'-UTR,intron-Distal4.1942012.62791HepG2PRPF4
chr2191513893191513976+5'-UTR,intron-Distal5.4294810.48744HepG2GTF2F1
chr2191514013191514079+5'-UTR,intron-Distal3.517656.03664K562GTF2F1
chr2191513749191513804+5'-UTR,intron-Distal,intron-Proximal4.232103.98215HepG2DGCR8
chr2191513772191513834+5'-UTR,intron-Distal,intron-Proximal3.441274.83930HepG2XPO5
chr2191514017191514089+5'-UTR,intron-Distal,intron-Proximal3.040715.22755HepG2DROSHA
chr2191513745191513815+5'-UTR,intron-Distal,intron-Proximal4.8869213.73118HepG2GTF2F1
chr2191513935191514075+5'-UTR,intron-Distal3.075124.22073K562XRN2
chr2191513891191513965+5'-UTR,intron-Distal4.200186.17312HepG2PCBP2
chr2191514005191514092+5'-UTR,intron-Distal,intron-Proximal3.050495.10220K562EWSR1
chr2191514020191514088+5'-UTR,intron-Distal,intron-Proximal3.224104.95054HepG2NCBP2
chr2191513749191513834+5'-UTR,intron-Distal,intron-Proximal3.419314.35063K562GEMIN5
chr2191514043191514089+5'-UTR,intron-Distal,intron-Proximal4.4514120.77663HepG2CSTF2T
chr2191513978191514087+5'-UTR,intron-Distal,intron-Proximal3.273693.12654K562SLTM
chr2191513751191513834+5'-UTR,intron-Distal,intron-Proximal4.691765.57311HepG2RBFOX2
chr2191513900191513942+5'-UTR,intron-Distal5.126269.34107HepG2PRPF4
chr2191513942191513992+5'-UTR,intron-Distal4.290709.05995HepG2PRPF4
chr2191513765191513835+5'-UTR,intron-Distal,intron-Proximal5.040578.84234K562CSTF2T
chr2191524324191524404+CDS3.406387.01246HepG2BCLAF1
chr2191550232191550291+CDS3.393963.32039HepG2PPIG
chr2191524356191524408+CDS3.009303.39306HepG2GRWD1
chr2191550229191550296+CDS3.474134.74886HepG2BCLAF1
chr2191523293191523398+intron-Distal4.3171711.31780HepG2PTBP1
chr2191514258191514291+intron-Distal3.636085.91153HepG2CSTF2T
chr2191513752191513789+intron-Distal,intron-Proximal5.2750137.52314HepG2FAM120A
chr2191514195191514269+intron-Distal3.943086.05097HepG2DGCR8
chr2191514426191514465+intron-Distal,intron-Proximal4.165253.96304K562CSTF2T
chr2191514276191514379+intron-Distal3.516188.12193K562NONO
chr2191514200191514265+intron-Distal4.692724.70436K562EWSR1
chr2191514166191514258+intron-Distal,intron-Proximal3.9369018.57154HepG2CSTF2T
chr2191514283191514328+intron-Distal3.692644.74378HepG2GTF2F1
chr2191523288191523379+intron-Distal3.522374.41421K562PTBP1
chr2191514169191514255+intron-Distal,intron-Proximal3.5345711.61961HepG2PRPF4
chr2191514196191514278+intron-Distal3.879989.41808K562CSTF2T
chr2191513739191513752+intron-Distal,intron-Proximal4.1374511.16601HepG2FAM120A
chr2191514422191514484+intron-Distal,intron-Proximal3.294883.84725K562NONO
chr2191514164191514274+intron-Distal,intron-Proximal3.352507.74676HepG2FASTKD2
chr2191514278191514348+intron-Distal3.419325.87066K562CSTF2T
chr2191514194191514248+intron-Distal5.795427.09207K562GEMIN5
chr2191514194191514254+intron-Distal4.065045.21824HepG2XRN2
chr2191514188191514250+intron-Distal4.0637410.46541HepG2GTF2F1
chr2191523307191523390+intron-Distal3.702769.98581HepG2QKI
chr2191513738191513789+intron-Distal,intron-Proximal5.7010043.56935HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAB1 is not available on ENCORE database.

  • 96 RBPs can affect the levels of NAB1.  








The Knockdown/knockout RNA-Seq assay for NAB1 is not available on ENCORE database.





96 RBPs can affect the gene expression of NAB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAB1ENSG00000138386.121010.096601316.66990-0.382405.529304.72860HepG2ACO1
NAB1ENSG00000138386.121088.844101322.98160-0.281002.729301.96740HepG2AKAP8L
NAB1ENSG00000138386.12625.597201032.64510-0.723004.038702.90750HepG2BCCIP
NAB1ENSG00000138386.12394.52290915.69630-1.2148019.5612018.18630HepG2BOP1
NAB1ENSG00000138386.121359.594201105.780000.298002.556201.81360HepG2CALR
NAB1ENSG00000138386.12932.882301520.89550-0.705204.657803.37890HepG2CCAR1
NAB1ENSG00000138386.12867.034801369.10220-0.659107.049905.85520HepG2CIRBP
NAB1ENSG00000138386.12886.266801316.53490-0.5709011.7677010.58890HepG2CKAP4
NAB1ENSG00000138386.12798.970901249.03740-0.644603.985603.06220HepG2CNOT7
NAB1ENSG00000138386.121391.954901659.00560-0.253202.281601.68830HepG2CELF1
NAB1ENSG00000138386.12751.094201217.80050-0.6972016.0114014.38060HepG2DDX19B
NAB1ENSG00000138386.12481.318901012.82790-1.0733017.4812015.95680HepG2DDX21
NAB1ENSG00000138386.12735.34410991.20110-0.430803.933202.83210HepG2DDX24
NAB1ENSG00000138386.122079.280001668.378700.317502.129001.57340HepG2DDX3X
NAB1ENSG00000138386.12728.30780971.83220-0.416205.781504.88950HepG2DNAJC2
NAB1ENSG00000138386.12678.252101035.00120-0.609705.460304.20210HepG2EEF2
NAB1ENSG00000138386.12647.18660862.85380-0.414902.826301.70680HepG2EFTUD2
NAB1ENSG00000138386.12565.86910840.20570-0.570303.928102.86000HepG2EIF3D
NAB1ENSG00000138386.12890.862801522.61510-0.773308.048606.96110HepG2EIF4A3
NAB1ENSG00000138386.122570.803101685.822000.608708.055406.69520HepG2EIF4G2
NAB1ENSG00000138386.12780.466601286.75590-0.7213010.467208.88000HepG2EWSR1
NAB1ENSG00000138386.121224.37660965.226300.343002.824801.66960HepG2FASTKD2
NAB1ENSG00000138386.12873.15470686.847300.346102.474901.73130HepG2FUBP3
NAB1ENSG00000138386.121875.091901512.779200.309702.160501.37880HepG2G3BP2
NAB1ENSG00000138386.12557.55260748.09930-0.424102.959702.03090HepG2GEMIN5
NAB1ENSG00000138386.12463.12250952.93410-1.0410012.3270011.06480HepG2GPKOW
NAB1ENSG00000138386.12742.274701156.12260-0.639304.327402.93740HepG2GRSF1
NAB1ENSG00000138386.12425.96600989.92490-1.2166020.9777019.48570HepG2HNRNPA1
NAB1ENSG00000138386.12645.049601101.09480-0.771509.715608.48310HepG2HNRNPC
NAB1ENSG00000138386.121259.496101624.86480-0.367506.148205.17810HepG2HNRNPL
NAB1ENSG00000138386.12578.11660909.40370-0.653606.031705.13950HepG2HNRNPLL
NAB1ENSG00000138386.12668.63140847.00750-0.341202.428101.53580HepG2HNRNPM
NAB1ENSG00000138386.12752.755601093.81610-0.539108.571207.54820HepG2HNRNPU
NAB1ENSG00000138386.12930.853901448.55510-0.638006.670805.66340HepG2IGF2BP2
NAB1ENSG00000138386.12953.509201117.29920-0.228702.569401.86060HepG2ILF2
NAB1ENSG00000138386.12795.990701062.84750-0.417103.154801.39390HepG2CCAR2
NAB1ENSG00000138386.12662.381601605.08050-1.2769012.0338010.30810HepG2LARP4
NAB1ENSG00000138386.12936.414401176.37180-0.329102.387401.33900HepG2LARP7
NAB1ENSG00000138386.121044.185101536.65680-0.557405.077404.19770HepG2MAGOH
NAB1ENSG00000138386.12887.203001545.27910-0.800508.697607.62920HepG2MATR3
NAB1ENSG00000138386.12561.53520879.36200-0.647103.478502.30260HepG2METAP2
NAB1ENSG00000138386.12581.81880931.94820-0.679703.094301.93420HepG2NONO
NAB1ENSG00000138386.12571.62130806.36980-0.496403.787502.91450HepG2NSUN2
NAB1ENSG00000138386.12629.375101082.70760-0.7827015.2707013.55550HepG2PARN
NAB1ENSG00000138386.121692.169401330.753100.346504.780704.01790HepG2PCBP1
NAB1ENSG00000138386.12878.672101194.83100-0.443402.354901.39320HepG2PCBP2
NAB1ENSG00000138386.12835.717601256.11720-0.587903.659702.27030HepG2PRPF6
NAB1ENSG00000138386.12472.69360783.51100-0.729004.976603.92760HepG2PRPF8
NAB1ENSG00000138386.12818.760401688.48410-1.0442021.3401019.89530HepG2PUF60
NAB1ENSG00000138386.121560.825501792.42050-0.199602.425001.86260HepG2PUM1
NAB1ENSG00000138386.121449.190201791.09880-0.305602.415401.78820HepG2PUM2
NAB1ENSG00000138386.121154.192101341.13580-0.216602.145301.58630HepG2PUS1
NAB1ENSG00000138386.12869.895601841.38710-1.0819023.0674021.86330HepG2RBM22
NAB1ENSG00000138386.121828.147401330.956800.457803.469102.72090HepG2RBM25
NAB1ENSG00000138386.12690.200501151.88910-0.738906.086004.51100HepG2RCC2
NAB1ENSG00000138386.12988.554401506.97120-0.6083011.2989010.34700HepG2NELFE
NAB1ENSG00000138386.12563.42220895.11020-0.667807.351106.31640HepG2RPLP0
NAB1ENSG00000138386.12322.99410817.54540-1.3398024.0215022.49940HepG2RPS19
NAB1ENSG00000138386.12947.754701308.25140-0.465103.962803.01300HepG2RPS2
NAB1ENSG00000138386.12468.28420820.55280-0.809208.640607.00660HepG2SERBP1
NAB1ENSG00000138386.12738.564201422.86300-0.946002.884601.49550HepG2SF1
NAB1ENSG00000138386.12849.466701499.20980-0.819607.513006.36700HepG2SF3A3
NAB1ENSG00000138386.12581.25400900.12250-0.631006.197805.17690HepG2SF3B1
NAB1ENSG00000138386.12727.506801135.97820-0.6429013.3480012.09870HepG2SMN1
NAB1ENSG00000138386.121655.223502079.76540-0.329405.354904.72080HepG2SRFBP1
NAB1ENSG00000138386.121292.256501471.50910-0.187401.732601.33400HepG2SRSF1
NAB1ENSG00000138386.12719.82280968.55640-0.428202.353001.43950HepG2SRSF3
NAB1ENSG00000138386.121435.788801667.15620-0.215502.074501.52280HepG2SRSF5
NAB1ENSG00000138386.121525.866301197.146400.349904.902804.20680HepG2SRSF9
NAB1ENSG00000138386.122323.504401805.704900.363606.261405.54740HepG2SSB
NAB1ENSG00000138386.12585.34210819.97150-0.486303.019901.73240HepG2STAU1
NAB1ENSG00000138386.121579.210801077.654800.551203.355202.02360HepG2SUB1
NAB1ENSG00000138386.121612.809501895.99530-0.233402.739002.11980HepG2SUCLG1
NAB1ENSG00000138386.121578.410601322.634800.255002.297901.77890HepG2TAF15
NAB1ENSG00000138386.12660.92530886.42170-0.423503.121202.35690HepG2TARDBP
NAB1ENSG00000138386.121533.025101215.337100.334903.178402.28740HepG2TIA1
NAB1ENSG00000138386.12379.626801062.89770-1.4853037.0991035.65320HepG2TIAL1
NAB1ENSG00000138386.12820.264901050.15180-0.356402.665102.04760HepG2U2AF1
NAB1ENSG00000138386.12622.316301479.41100-1.249304.584403.29550HepG2U2AF2
NAB1ENSG00000138386.12671.262401283.64750-0.9353023.5649022.07220HepG2UTP3
NAB1ENSG00000138386.12715.627901268.06020-0.825307.139205.50730HepG2XRCC6
NAB1ENSG00000138386.121040.219601462.27240-0.4913010.066209.18660HepG2ZNF622
NAB1ENSG00000138386.121330.06570864.690500.6211011.5305010.46630K562AGGF1
NAB1ENSG00000138386.12927.914401312.07460-0.499805.129004.37270K562AQR
NAB1ENSG00000138386.12461.43450599.88010-0.378502.060901.31400K562BOP1
NAB1ENSG00000138386.12175.63060260.92970-0.571102.889101.80870K562CCAR1
NAB1ENSG00000138386.121336.171601033.341400.370703.825102.40850K562CCDC124
NAB1ENSG00000138386.12717.44980882.68140-0.299002.522901.83000K562EIF2S2
NAB1ENSG00000138386.12523.59320712.55400-0.444603.322402.42710K562EIF4A3
NAB1ENSG00000138386.121697.198401460.127000.217002.185401.34560K562EIF4G2
NAB1ENSG00000138386.12422.65480564.81110-0.418302.894301.59430K562EXOSC5
NAB1ENSG00000138386.12579.79250416.875900.475802.876401.72570K562FKBP4
NAB1ENSG00000138386.12610.97180741.02730-0.278401.946601.42150K562FXR1
NAB1ENSG00000138386.12980.08930718.391800.448002.584801.90580K562G3BP2
NAB1ENSG00000138386.12646.755901176.23000-0.8629013.2796011.60320K562GRSF1
NAB1ENSG00000138386.12684.34290904.33240-0.402103.305202.13850K562HNRNPL
NAB1ENSG00000138386.121265.83790954.850900.406602.841802.00390K562KIF1C
NAB1ENSG00000138386.12707.59740910.42000-0.363602.794401.95000K562MAGOH
NAB1ENSG00000138386.12724.84240908.62760-0.326002.405401.55160K562MATR3
NAB1ENSG00000138386.12522.61540700.76230-0.423204.153303.18040K562MTPAP
NAB1ENSG00000138386.12659.54280778.63370-0.239501.975901.33210K562NSUN2
NAB1ENSG00000138386.121182.937201500.31660-0.342902.774601.33200K562PNPT1
NAB1ENSG00000138386.12714.24210884.50330-0.308502.263901.65470K562PTBP1
NAB1ENSG00000138386.121196.691201593.12860-0.412803.239902.35770K562PUF60
NAB1ENSG00000138386.121665.55400892.283700.9003014.0596012.87870K562PUS1
NAB1ENSG00000138386.121162.37560869.416300.418903.866003.18160K562RBM15
NAB1ENSG00000138386.12669.36620848.32890-0.341802.309301.54630K562RBM22
NAB1ENSG00000138386.12290.42090392.72660-0.435402.337101.43070K562RCC2
NAB1ENSG00000138386.12637.61840892.68460-0.485503.869502.55120K562NELFE
NAB1ENSG00000138386.121182.64810912.485400.374002.797101.43110K562SSRP1
NAB1ENSG00000138386.12964.12740719.146600.422804.072303.09940K562U2AF2
NAB1ENSG00000138386.121023.73950825.600000.310203.099402.34060K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAB1 is not available on ENCORE database.





9 RBPs can affect the splicing of NAB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAB1ENSG00000138386.12chr2+1915184521915185061915145711915147081915207021915208790.468000.000160.01921includedHepG2QKI
SENAB1ENSG00000138386.12chr2+1915207021915208791915145711915147081915238831915247210.280000.000370.03962includedHepG2SRSF7
SENAB1ENSG00000138386.12chr2+191518452191518506191514571191514708191523883191524088-0.435000.000040.01406excludedK562DROSHA
SENAB1ENSG00000138386.12chr2+1915184521915185061915145561915147081915238831915240880.461000.002170.03211includedK562PUS1
SENAB1ENSG00000138386.12chr2+1915184521915185061915145711915147081915207021915208790.476000.000540.01537includedHepG2SRSF1
SENAB1ENSG00000138386.12chr2+191518452191518506191514571191514708191523883191524088-0.422000.000300.02803excludedK562HNRNPUL1
SENAB1ENSG00000138386.12chr2+1915184521915185061915145711915147081915207021915208790.396000.000620.06331includedHepG2TAF15
SENAB1ENSG00000138386.12chr2+1915184521915185061915145711915147081915207021915208790.470000.002650.08404includedK562SF3B1
MXENAB1ENSG00000138386.12chr2+191514571191514708191518452191518506191513958191514086191520702191520879-0.347000.000460.094582includedHepG2EIF3H
MXENAB1ENSG00000138386.12chr2+191514571191514708191518452191518506191513958191514086191520702191520879-0.434000.005270.080442includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAB1 is not avaliable on ENCORE database.