GYPA

General Information

Gene Name       : GYPA
Gene ID             : ENSG00000170180.21
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GYPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GYPAENSG00000170180.210.000.000.00ENCSR000AEF
HepG2GYPAENSG00000170180.210.000.000.00ENCSR985KAT
K562GYPAENSG00000170180.21171.26187.17179.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GYPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • GYPA RNA is bound by 12 proteins.  







eCLIP assay for GYPA is not avaliable on ENCORE database.





12 proteins are bound to GYPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4145032331145032454-3'-UTR,intron-Distal,intron-Proximal4.9490812.27606K562IGF2BP1
chr4145039829145039959-3'-UTR,CDS,intron-Distal,intron-Proximal3.836306.39986K562SF3B4
chr4145031908145032015-3'-UTR,intron-Distal,intron-Proximal3.658216.71517K562IGF2BP1
chr4145041642145041680-3'-UTR,CDS,intron-Distal,intron-Proximal3.478636.19411K562SND1
chr4145038004145038031-3'-UTR,CDS,intron-Distal,intron-Proximal4.2939613.17173K562SND1
chr4145031918145031950-3'-UTR,intron-Distal4.3758215.60617K562HNRNPL
chr4145032504145032566-3'-UTR,CDS,intron-Distal,intron-Proximal3.533746.82656K562SND1
chr4145032087145032133-3'-UTR,intron-Distal,intron-Proximal4.519445.80303K562IGF2BP1
chr4145031883145031918-3'-UTR,intron-Distal4.0588212.06403K562HNRNPL
chr4145039877145039906-3'-UTR,CDS,intron-Distal,intron-Proximal4.7135514.10373K562SND1
chr4145038081145038093-3'-UTR,CDS,intron-Distal,intron-Proximal4.837338.55362K562SND1
chr4145032254145032330-3'-UTR,intron-Distal3.829965.31375K562TARDBP
chr4145032035145032087-3'-UTR,intron-Distal,intron-Proximal5.022658.95185K562IGF2BP1
chr4145039865145039877-3'-UTR,CDS,intron-Distal,intron-Proximal5.2630611.14897K562SND1
chr4145032241145032332-3'-UTR,intron-Distal4.6629216.24647HepG2SUB1
chr4145040865145040936-3'-UTR,CDS,intron-Distal,intron-Proximal4.753876.76328K562IGF2BP2
chr4145031621145031654-3'-UTR,intron-Distal3.984046.36204K562IGF2BP1
chr4145038019145038085-3'-UTR,CDS,intron-Distal4.572278.90122K562RPS3
chr4145032392145032469-3'-UTR,intron-Distal,intron-Proximal3.6493140.00590K562PUM2
chr4145031592145031624-3'-UTR,intron-Distal3.309676.78138K562YBX3
chr4145038031145038081-3'-UTR,CDS,intron-Distal5.5432727.28427K562SND1
chr4145035895145035922-3'-UTR,CDS,intron-Distal,intron-Proximal3.128598.97494K562SND1
chr4145032158145032208-3'-UTR,intron-Distal,intron-Proximal3.3713522.32358K562PUM2
chr4145031799145031855-3'-UTR,intron-Distal3.283585.80916K562IGF2BP2
chr4145041642145041673-3'-UTR,CDS,intron-Distal,intron-Proximal3.015935.23563K562HNRNPL
chr4145054731145054868-intron-Distal3.211667.30615K562KHSRP
chr4145057093145057174-intron-Distal4.121154.50052K562HNRNPL
chr4145042050145042115-intron-Distal3.626875.57983K562HNRNPL
chr4145060491145060533-intron-Distal5.059119.13169K562KHDRBS1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GYPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GYPA is not available on ENCORE database.

  • 96 RBPs can affect the levels of GYPA.  








The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.





96 RBPs can affect the gene expression of GYPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GYPAENSG00000170180.1510.514700.0000099999.999903.127802.36220HepG2TARDBP
GYPAENSG00000170180.152363.279503164.16980-0.421004.576003.01450K562AARS
GYPAENSG00000170180.152520.890401492.455500.756103.393501.48980K562ADAR
GYPAENSG00000170180.158322.707306696.016300.313603.073902.02460K562AKAP8
GYPAENSG00000170180.155235.352506340.94710-0.276402.622301.98570K562AKAP8L
GYPAENSG00000170180.159492.556304858.364100.9662016.8995015.61040K562AQR
GYPAENSG00000170180.155697.480006653.03870-0.223702.776001.86100K562ATP5C1
GYPAENSG00000170180.151713.683902825.12040-0.721207.881605.58180K562BCCIP
GYPAENSG00000170180.151893.444701461.350500.373602.649001.62570K562CCAR1
GYPAENSG00000170180.155492.574903580.208400.617304.804902.79340K562CEBPZ
GYPAENSG00000170180.1510473.831104974.373501.0741010.775808.67810K562CNOT7
GYPAENSG00000170180.153120.149205192.61140-0.7348025.2509022.29330K562CPEB4
GYPAENSG00000170180.152737.108001562.193400.809005.051002.48770K562CPSF7
GYPAENSG00000170180.152589.716101596.251700.698006.270703.62770K562YBX3
GYPAENSG00000170180.1516286.128706934.272701.2317029.9311027.28850K562CELF1
GYPAENSG00000170180.155943.659704115.491900.530203.266101.94420K562DDX21
GYPAENSG00000170180.153154.954602394.092700.398005.802603.89390K562DDX27
GYPAENSG00000170180.151661.151802281.27230-0.457704.584501.91620K562DDX28
GYPAENSG00000170180.151590.893102079.19530-0.386202.521501.52750K562DDX3X
GYPAENSG00000170180.159095.620405372.765200.7594016.1595014.70380K562DDX47
GYPAENSG00000170180.152308.408701635.857500.496804.804402.95070K562DHX30
GYPAENSG00000170180.155323.132306823.78180-0.358306.709905.25140K562DKC1
GYPAENSG00000170180.154829.409902209.899101.1278013.2816010.73340K562EEF2
GYPAENSG00000170180.153363.664702134.960000.655709.049707.31270K562EFTUD2
GYPAENSG00000170180.151753.263103898.54690-1.152908.236907.09560K562EIF2S2
GYPAENSG00000170180.153650.195401486.495701.296004.115302.86210K562EIF3A
GYPAENSG00000170180.153280.419202371.395500.468003.476002.58940K562EIF3G
GYPAENSG00000170180.157571.621705640.181700.4248010.337508.56550K562EIF4G2
GYPAENSG00000170180.154184.977703006.389700.477104.767003.22000K562FKBP4
GYPAENSG00000170180.153229.245902096.537500.6231010.361807.61630K562FUS
GYPAENSG00000170180.152904.290802259.125000.362305.891505.05750K562FXR1
GYPAENSG00000170180.155172.871902737.181400.918208.158706.81520K562G3BP2
GYPAENSG00000170180.156678.842803122.876001.096608.184306.30890K562GLRX3
GYPAENSG00000170180.1510615.351405658.040300.907709.228007.77050K562GPKOW
GYPAENSG00000170180.158997.421705196.006500.792009.352907.93990K562GRSF1
GYPAENSG00000170180.157206.157804464.587800.690604.599502.28150K562HNRNPA0
GYPAENSG00000170180.155202.603803072.910600.7595010.220608.32480K562HNRNPA1
GYPAENSG00000170180.156647.129004656.188900.513503.296301.55350K562HNRNPAB
GYPAENSG00000170180.152139.917603091.42270-0.530707.809505.80590K562HNRNPF
GYPAENSG00000170180.151488.586902874.31330-0.949307.666005.55490K562IGF2BP3
GYPAENSG00000170180.153008.829401526.664300.9787016.6113013.46720K562ILF3
GYPAENSG00000170180.152607.046801475.684200.8209012.115009.24400K562KHDRBS1
GYPAENSG00000170180.154810.826606496.72980-0.433407.262004.30600K562CCAR2
GYPAENSG00000170180.157646.341504831.514100.662203.779502.67330K562KRR1
GYPAENSG00000170180.151844.506403087.32020-0.7431013.8565010.34910K562LSM11
GYPAENSG00000170180.154427.281502965.244000.578206.877005.33900K562MATR3
GYPAENSG00000170180.158990.367106011.994800.580409.713207.68940K562MSI2
GYPAENSG00000170180.156034.316303283.244900.8780044.3067041.82030K562MTPAP
GYPAENSG00000170180.151439.102802169.09370-0.591909.629507.38110K562NCBP2
GYPAENSG00000170180.152721.838402104.607300.370902.832701.51930K562NONO
GYPAENSG00000170180.156778.804303648.271600.8937045.3219042.93920K562NSUN2
GYPAENSG00000170180.153132.750802239.903200.483904.204201.88010K562PA2G4
GYPAENSG00000170180.158340.161204778.941400.803304.999703.31180K562PABPC1
GYPAENSG00000170180.1511127.870805502.740101.0159020.0607017.90620K562PCBP3
GYPAENSG00000170180.152829.656802023.043100.484004.438102.06970K562PES1
GYPAENSG00000170180.157375.073004220.694600.8051021.9793019.86360K562POLR2G
GYPAENSG00000170180.153473.707802077.572000.7415011.419109.88770K562PRPF8
GYPAENSG00000170180.151884.306703103.64340-0.7199012.6022010.39340K562PSIP1
GYPAENSG00000170180.152027.488702886.36060-0.509602.976302.28950K562PTBP1
GYPAENSG00000170180.155207.607006289.01450-0.272202.366101.85540K562PUS1
GYPAENSG00000170180.158396.364404925.989100.769309.509506.63860K562RBM17
GYPAENSG00000170180.152369.311302832.14150-0.257402.337401.43070K562RCC2
GYPAENSG00000170180.153252.294002335.674200.4775012.324709.32470K562RPS10
GYPAENSG00000170180.154145.344902115.951300.9701011.111209.44020K562RPS19
GYPAENSG00000170180.159329.802504438.719501.071606.448303.97380K562RPS3A
GYPAENSG00000170180.155492.985802123.916101.3708023.2905019.62770K562RRP9
GYPAENSG00000170180.155500.681803761.038100.548409.076407.18000K562SAFB
GYPAENSG00000170180.157485.521704531.598600.724005.452703.18670K562SBDS
GYPAENSG00000170180.157004.966903888.344700.8491010.873708.20580K562SDAD1
GYPAENSG00000170180.154199.592701777.556501.2403014.1725011.11410K562SERBP1
GYPAENSG00000170180.156150.573403599.479200.7728017.8280015.90530K562SF3A3
GYPAENSG00000170180.159210.248605381.349100.7752011.306109.25580K562SF3B1
GYPAENSG00000170180.153466.997202846.404700.284403.175302.25860K562SF3B4
GYPAENSG00000170180.152989.586401609.753500.8930015.9975013.24650K562SLBP
GYPAENSG00000170180.152656.595402074.980300.356403.014601.30760K562SRP68
GYPAENSG00000170180.156896.755603687.705000.9031011.218509.48540K562SRPK2
GYPAENSG00000170180.151845.257702829.38610-0.616703.957003.11730K562SRSF1
GYPAENSG00000170180.156124.783703673.566700.737406.897505.03860K562SRSF7
GYPAENSG00000170180.157745.306304804.059100.6890016.8407013.40920K562SRSF9
GYPAENSG00000170180.154287.816002446.149200.8096012.441809.78770K562SSB
GYPAENSG00000170180.157882.188704435.247200.829503.605801.72340K562STIP1
GYPAENSG00000170180.157239.120105369.443600.430908.394705.98770K562SUCLG1
GYPAENSG00000170180.154626.574502011.021001.2019024.0217021.13730K562SUPV3L1
GYPAENSG00000170180.153552.676102853.311900.316203.016101.35300K562TBRG4
GYPAENSG00000170180.152008.291602762.50870-0.460002.473101.70520K562TIA1
GYPAENSG00000170180.154690.054902985.128900.651708.614506.89260K562TIAL1
GYPAENSG00000170180.156016.095704000.593800.588503.751101.66160K562TRNAU1AP
GYPAENSG00000170180.156018.914404009.286800.586106.575703.96980K562TUFM
GYPAENSG00000170180.153780.387102740.369600.464107.388406.08200K562U2AF2
GYPAENSG00000170180.155806.453502128.677101.4476040.4804037.10450K562UCHL5
GYPAENSG00000170180.156732.102603310.034001.024105.305704.07310K562WDR3
GYPAENSG00000170180.158272.375603441.792501.2650019.1395017.20500K562WDR43
GYPAENSG00000170180.159724.467105756.808100.7563017.5760014.80950K562WRN
GYPAENSG00000170180.152845.508402167.997000.392203.339301.97170K562XRN2
GYPAENSG00000170180.159078.277205472.841900.7300014.6713012.53400K562ZC3H8
GYPAENSG00000170180.156370.703904501.261800.501007.825104.89270K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.





35 RBPs can affect the splicing of GYPA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGYPAENSG00000170180.15chr4-1450398661450399051450380061450380921450408381450409340.060000.000460.01106includedK562SRSF1
SEGYPAENSG00000170180.15chr4-1450416421450417411450408381450409341450617511450617880.074000.000000.00000includedK562SRSF1
SEGYPAENSG00000170180.15chr4-145035841145035920145032546145032563145038006145038092-0.063000.000000.00000excludedK562SF3B4
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.336000.000000.00000excludedK562SF3B4
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.059000.004330.06622excludedK562SF3B4
SEGYPAENSG00000170180.15chr4-145039866145039898145038006145038092145040838145040934-0.173000.001590.05274excludedK562PRPF8
SEGYPAENSG00000170180.15chr4-145035841145035964145030456145032563145038006145038129-0.071000.000000.00008excludedK562AQR
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.099000.000000.00000excludedK562AQR
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.099000.000000.00000excludedK562PUS1
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.115000.000020.00213excludedK562EFTUD2
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.076000.000050.05500excludedK562EXOSC5
SEGYPAENSG00000170180.15chr4-145035841145035920145032546145032563145038006145038092-0.087000.000000.00000excludedK562U2AF1
SEGYPAENSG00000170180.15chr4-1450416421450417411450408381450409341450617511450617880.052000.000000.00006includedK562HNRNPL
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.071000.000010.00327excludedK562SRSF7
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.101000.000010.00278excludedK562RBM22
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.089000.000000.00000excludedK562UTP18
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.104000.000000.00000excludedK562UTP18
SEGYPAENSG00000170180.15chr4-145035841145035920145032546145032563145038006145038092-0.145000.000000.00000excludedK562U2AF2
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.155000.000000.00000excludedK562U2AF2
SEGYPAENSG00000170180.15chr4-145041642145041741145040838145040934145061751145061788-0.289000.000000.00000excludedK562U2AF2
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.120000.000000.00001excludedK562TARDBP
SEGYPAENSG00000170180.15chr4-145035841145035920145032546145032563145038006145038092-0.055000.000000.00000excludedK562HNRNPU
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.213000.000000.00000excludedK562HNRNPU
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.130000.000000.00001excludedK562HNRNPU
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.086000.000000.00000excludedK562RBM15
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.072000.000000.00002excludedK562AGGF1
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.177000.000000.00000excludedK562SF3B1
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.072000.000560.02888excludedK562HNRNPK
SEGYPAENSG00000170180.15chr4-145041642145041741145040515145040934145061751145061788-0.128000.000000.00000excludedK562HNRNPK
SEGYPAENSG00000170180.15chr4-145039866145039905145038006145038092145040838145040934-0.090000.000290.06908excludedK562SERBP1
SEGYPAENSG00000170180.15chr4-1450416421450417411450408381450409341450617511450617880.071000.000000.00000includedK562HNRNPC
A3SSGYPAENSG00000170180.15chr4-1450380061450381291450380061450380921450408381450409340.053000.017330.08444longerK562AQR
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.114000.000530.084761includedK562KHDRBS1
MXEGYPAENSG00000170180.15chr4-1450380061450380921450398661450399051450358411450359201450408381450409340.078000.000000.000001includedK562DROSHA
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325191450325631450408381450409340.107000.000020.002271includedK562SF3B1
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325461450325631450398661450399050.132000.000010.001421includedK562LIN28B
MXEGYPAENSG00000170180.15chr4-1450398661450399051450408381450410791450380061450380921450416421450417410.077000.000000.000001includedK562AQR
MXEGYPAENSG00000170180.15chr4-145038006145038092145040838145040934145032207145032563145061751145061846-0.244000.000030.000362includedK562AQR
MXEGYPAENSG00000170180.15chr4-145038006145038092145040838145040934145030456145032563145041642145041741-0.163000.000000.000002includedK562U2AF2
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325191450325631450408381450409340.119000.000000.000001includedK562TARDBP
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325461450325631450398661450399050.094000.001490.070301includedK562LARP7
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325461450325631450398661450399050.096000.001010.049741includedK562PHF6
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.074000.002620.098791includedK562PHF6
MXEGYPAENSG00000170180.15chr4-145039866145039905145041642145041741145038006145038092145061751145061788-0.122000.000000.000032includedK562METAP2
MXEGYPAENSG00000170180.15chr4-145039866145039905145040838145040934145038006145038092145041642145041741-0.101000.000270.058422includedK562METAP2
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.058000.001230.037211includedK562SBDS
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325461450325631450398661450399050.094000.001390.060851includedK562SAFB
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.101000.001200.043041includedK562TAF15
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.079000.000020.002321includedK562PPIL4
MXEGYPAENSG00000170180.15chr4-145039866145039905145040838145040934145038006145038092145041642145041741-0.148000.000000.000022includedK562DDX55
MXEGYPAENSG00000170180.15chr4-145039866145039905145041642145041741145038006145038092145061751145061788-0.076000.000230.012402includedK562DDX55
MXEGYPAENSG00000170180.15chr4-1450398661450399051450408381450409341450380061450380921450416421450417410.127000.000010.000381includedK562SF3B4
MXEGYPAENSG00000170180.15chr4-145038006145038092145039866145039905145035841145035920145040838145040934-0.120000.000000.000002includedK562SF3B4
MXEGYPAENSG00000170180.15chr4-1450358411450359201450380061450380921450325461450325631450398661450399050.081000.005490.087091includedK562FXR2
MXEGYPAENSG00000170180.15chr4-145038006145038092145040838145040934145035841145035920145041642145041741-0.087000.000050.019872includedK562GPKOW
MXEGYPAENSG00000170180.15chr4-145039866145039905145041642145041741145038006145038092145061751145061788-0.097000.000000.004052includedK562GPKOW
MXEGYPAENSG00000170180.15chr4-145039866145039905145041642145041741145038006145038092145061751145061788-0.101000.000000.001042includedK562FMR1
MXEGYPAENSG00000170180.15chr4-1450398661450399051450416421450417411450380061450380921450617511450617880.118000.001070.066751includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GYPA is not avaliable on ENCORE database.