GAMT

General Information

Gene Name       : GAMT
Gene ID             : ENSG00000130005.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GAMT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GAMTENSG00000130005.125.2419.4012.32ENCSR000AEF
HepG2GAMTENSG00000130005.12157.5050.69104.09ENCSR985KAT
K562GAMTENSG00000130005.1225.3517.6221.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GAMT is not avaliable on ENCORE database.



Proteins bound to RNA
  • GAMT RNA is bound by 19 proteins.  







eCLIP assay for GAMT is not avaliable on ENCORE database.





19 proteins are bound to GAMT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1913971211397252-3'-UTR,intron-Distal4.302019.30447HepG2UPF1
chr1913971451397212-3'-UTR,intron-Distal4.9432111.30955K562PABPC4
chr1913972841397367-3'-UTR,CDS,intron-Distal4.162125.97445HepG2PCBP1
chr1913971731397243-3'-UTR,intron-Distal3.859518.45303HepG2DDX55
chr1913972521397325-3'-UTR,intron-Distal3.847804.93514HepG2UPF1
chr1914013491401533-5'-UTR,CDS,intron-Distal6.508147.56430K562DDX3X
chr1914014751401526-5'-UTR,intron-Distal6.1746212.51207HepG2DDX3X
chr1914013971401467-CDS,intron-Distal4.209509.87532K562YBX3
chr1913974431397499-CDS,intron-Distal3.784999.02617HepG2PPIG
chr1913997831399793-CDS,intron-Distal,intron-Proximal4.865988.69247K562AQR
chr1913987951398906-CDS,intron-Distal,intron-Proximal4.604946.42929HepG2RBM22
chr1914013171401374-CDS,intron-Distal3.812794.61051HepG2DDX3X
chr1913994991399526-CDS,intron-Distal,intron-Proximal3.6209416.42675HepG2PRPF8
chr1913999251400003-CDS,intron-Distal,intron-Proximal5.422569.91322HepG2AQR
chr1914013891401430-CDS,intron-Distal4.807767.51958HepG2DDX3X
chr1913995571399620-CDS,intron-Distal,intron-Proximal4.473858.01338K562AQR
chr1913995591399627-CDS,intron-Distal,intron-Proximal4.8630810.43503HepG2EFTUD2
chr1913995401399605-CDS,intron-Distal,intron-Proximal3.108823.75327HepG2U2AF2
chr1913995671399602-CDS,intron-Distal,intron-Proximal3.8616410.79642HepG2PRPF8
chr1914012341401295-intron-Distal4.812115.17615K562AQR
chr1914008971400975-intron-Distal3.699778.36295HepG2DDX59
chr1913997501399781-intron-Distal,intron-Proximal5.9423410.44569K562AQR
chr1913996831399735-intron-Distal,intron-Proximal5.251248.52745HepG2AQR
chr1914011851401238-intron-Distal4.912475.81696HepG2XRN2
chr1913997581399792-intron-Distal,intron-Proximal3.2919511.50321HepG2PRPF8
chr1914009071400933-intron-Distal5.524856.68817HepG2EFTUD2
chr1913993371399397-intron-Distal3.722086.96502HepG2SF3B4
chr1914002221400317-intron-Distal3.055056.19671HepG2HNRNPK
chr1914012581401295-intron-Distal5.8378914.31578HepG2AQR
chr1913991971399255-intron-Distal,intron-Proximal4.359629.75000HepG2SF3B4
chr1914010891401142-intron-Distal3.995955.87410HepG2DDX59
chr1913996641399734-intron-Distal,intron-Proximal3.9842013.60541HepG2RBM22
chr1914005381400551-intron-Distal3.053973.53589HepG2DDX59
chr1913996731399733-intron-Distal,intron-Proximal3.5162715.43916HepG2PRPF8
chr1914003431400390-intron-Distal3.973553.41442HepG2HNRNPK
chr1913996271399731-intron-Distal,intron-Proximal6.0454718.84893HepG2EFTUD2
chr1913995941399655-intron-Distal,intron-Proximal4.034459.87553HepG2SF3A3
chr1913997341399758-intron-Distal,intron-Proximal3.3555810.11149HepG2PRPF8
chr1913997601399792-intron-Distal,intron-Proximal5.4900719.28805HepG2AQR
chr1913997511399760-intron-Distal,intron-Proximal5.3390016.41512HepG2AQR
chr1914002131400278-intron-Distal3.605375.02497HepG2DDX59
chr1914008121400863-intron-Distal4.096415.52200HepG2DDX59
chr1913999811400092-intron-Distal,intron-Proximal5.1422013.42450HepG2DDX59
chr1914010961401174-intron-Distal4.8344310.83708HepG2EFTUD2
chr1913993011399441-intron-Distal,intron-Proximal4.3413714.39059HepG2RBFOX2
chr1913993321399427-intron-Distal,intron-Proximal4.393935.83275HepG2PRPF4
chr1913994731399499-intron-Distal,intron-Proximal4.0692512.03869HepG2PRPF8
chr1914000921400213-intron-Distal5.2777013.81191HepG2DDX59
chr1914000651400222-intron-Distal4.5199613.58398HepG2HNRNPK
chr1913992551399309-intron-Distal,intron-Proximal4.0553914.53367HepG2SF3B4
chr1913996041399653-intron-Distal,intron-Proximal3.124923.75247HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GAMT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GAMT is not available on ENCORE database.

  • 111 RBPs can affect the levels of GAMT.  








The Knockdown/knockout RNA-Seq assay for GAMT is not available on ENCORE database.





111 RBPs can affect the gene expression of GAMT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GAMTENSG00000130005.7303.12780597.96640-0.980104.839103.45790HepG2AATF
GAMTENSG00000130005.72550.904401227.161201.0556012.3966010.64050HepG2ABCF1
GAMTENSG00000130005.7399.746101134.10150-1.5044024.2933022.89500HepG2ACO1
GAMTENSG00000130005.7586.62950361.773100.697304.171902.97490HepG2ADAR
GAMTENSG00000130005.7571.462501710.19070-1.581409.556708.63290HepG2AKAP1
GAMTENSG00000130005.71032.364101452.78960-0.492902.219701.59260HepG2AUH
GAMTENSG00000130005.7751.238001344.30180-0.839503.339402.49550HepG2CIRBP
GAMTENSG00000130005.7864.584401133.62820-0.390903.775403.02090HepG2CKAP4
GAMTENSG00000130005.7270.66070488.05900-0.850604.961904.06420HepG2CPSF6
GAMTENSG00000130005.7596.28680370.995000.684507.624005.95210HepG2YBX3
GAMTENSG00000130005.7668.60490388.475000.783204.237102.93440HepG2CSTF2
GAMTENSG00000130005.71078.33910872.355300.305702.023901.37500HepG2DAZAP1
GAMTENSG00000130005.7581.42180371.510100.646106.564904.87500HepG2DDX1
GAMTENSG00000130005.7460.64150645.47140-0.486702.306101.48100HepG2DDX24
GAMTENSG00000130005.7465.82870351.354500.406802.372301.46490HepG2DHX30
GAMTENSG00000130005.71631.649301084.969200.5886011.4824010.29890HepG2DKC1
GAMTENSG00000130005.7703.47320364.285700.949305.567304.59980HepG2DNAJC21
GAMTENSG00000130005.7739.72670361.074201.0346022.4520020.75770HepG2DNAJC2
GAMTENSG00000130005.7734.166101352.59370-0.881603.780503.09440HepG2EIF2S1
GAMTENSG00000130005.7262.77660604.30380-1.201402.491201.62870HepG2EIF3D
GAMTENSG00000130005.7783.190001455.67330-0.894302.453701.80470HepG2EIF4B
GAMTENSG00000130005.71447.634001668.07350-0.204502.091501.55380HepG2ETF1
GAMTENSG00000130005.7712.012701108.01850-0.638003.561402.61310HepG2EWSR1
GAMTENSG00000130005.7417.65680628.24590-0.589002.566901.46090HepG2FASTKD2
GAMTENSG00000130005.7364.978701238.99120-1.763308.069106.83110HepG2FIP1L1
GAMTENSG00000130005.7706.177401319.07310-0.9014015.2728013.49640HepG2FUBP3
GAMTENSG00000130005.7964.61420553.192300.802107.740006.70410HepG2GPKOW
GAMTENSG00000130005.7582.91090367.775700.664303.123802.44330HepG2HNRNPA1
GAMTENSG00000130005.71105.78960625.750800.8213016.8462015.27220HepG2HNRNPF
GAMTENSG00000130005.7508.029801417.94220-1.480808.312107.15300HepG2HNRNPK
GAMTENSG00000130005.71270.59470527.927101.267007.644706.65790HepG2HNRNPLL
GAMTENSG00000130005.7873.88510406.379501.1045010.830609.69830HepG2HNRNPU
GAMTENSG00000130005.71304.43670616.185401.0819023.4586021.59960HepG2IGF2BP1
GAMTENSG00000130005.7583.79140415.102900.491905.549804.54210HepG2ILF2
GAMTENSG00000130005.7438.26800254.285200.785304.307302.76250HepG2KHDRBS1
GAMTENSG00000130005.71261.576701036.569900.283303.171202.08140HepG2KIF1C
GAMTENSG00000130005.71553.86500987.289800.654202.306701.55440HepG2LARP4
GAMTENSG00000130005.7290.55170632.33420-1.121902.281201.32400HepG2METAP2
GAMTENSG00000130005.7636.615801002.11080-0.654503.130802.27330HepG2MSI2
GAMTENSG00000130005.7847.490401382.68400-0.706203.484502.68020HepG2PABPC4
GAMTENSG00000130005.71148.640201437.05870-0.323204.006903.30420HepG2PCBP1
GAMTENSG00000130005.7747.53210362.457701.0442010.946209.53040HepG2PPIL4
GAMTENSG00000130005.7564.68830808.72940-0.518206.340605.22220HepG2PRPF4
GAMTENSG00000130005.7263.16830476.90750-0.857702.768501.95940HepG2PRPF8
GAMTENSG00000130005.71213.020801462.25400-0.269602.572102.04180HepG2PTBP1
GAMTENSG00000130005.71297.85420825.769000.652208.672507.69430HepG2PUF60
GAMTENSG00000130005.71208.05630876.616200.462608.247507.33710HepG2PUM1
GAMTENSG00000130005.71792.958801155.122700.6342015.7902014.52980HepG2PUS1
GAMTENSG00000130005.7846.145301583.67200-0.9043019.7707018.31380HepG2QKI
GAMTENSG00000130005.778.73940558.81960-2.827203.689802.87910HepG2RAVER1
GAMTENSG00000130005.7680.923601230.39070-0.853608.371706.98550HepG2RBM15
GAMTENSG00000130005.7562.103001394.18480-1.3105037.2179035.74240HepG2RBM22
GAMTENSG00000130005.7928.171801437.27850-0.630908.683207.53700HepG2RBM25
GAMTENSG00000130005.7901.31950553.775400.702605.778504.24170HepG2RCC2
GAMTENSG00000130005.71150.936701627.35410-0.499708.385907.53620HepG2NELFE
GAMTENSG00000130005.71222.464601515.64870-0.310103.169802.51630HepG2RECQL
GAMTENSG00000130005.71148.93790674.093600.769203.586602.82610HepG2RPLP0
GAMTENSG00000130005.71047.19330628.896000.735507.373106.10590HepG2RPS2
GAMTENSG00000130005.7978.72030267.943001.8689028.3819025.95690HepG2RPS3A
GAMTENSG00000130005.7104.38140471.71700-2.176108.255106.99040HepG2RRP9
GAMTENSG00000130005.7749.38610361.897901.0500021.3518019.80380HepG2SAFB2
GAMTENSG00000130005.7636.531301237.36230-0.959008.777707.52200HepG2SF3A3
GAMTENSG00000130005.7779.186501522.40760-0.9663026.5111025.00060HepG2SF3B4
GAMTENSG00000130005.71323.93220791.837000.7415013.0757011.74460HepG2SLBP
GAMTENSG00000130005.7516.60780422.032300.291601.948501.39340HepG2SMN1
GAMTENSG00000130005.71020.66270572.418000.834302.193901.35120HepG2SMNDC1
GAMTENSG00000130005.7243.72550581.39490-1.254306.476505.27110HepG2SNRNP70
GAMTENSG00000130005.7260.032901574.65220-2.59830144.43810142.24400HepG2SRFBP1
GAMTENSG00000130005.7975.640701589.05890-0.7038015.8032014.87070HepG2SRSF1
GAMTENSG00000130005.7264.34010562.32040-1.089006.960005.32030HepG2SRSF3
GAMTENSG00000130005.71107.62000815.357700.441906.070905.19550HepG2SRSF5
GAMTENSG00000130005.7982.29300614.781000.6760011.3267010.08290HepG2SRSF7
GAMTENSG00000130005.7434.085401292.77970-1.5744059.8490057.96640HepG2SRSF9
GAMTENSG00000130005.72830.252501367.121601.0497045.9837044.51260HepG2SSB
GAMTENSG00000130005.71213.44830927.259700.388005.763404.92570HepG2SUCLG1
GAMTENSG00000130005.7406.053901428.29400-1.8145065.0475062.77150HepG2TAF15
GAMTENSG00000130005.7802.68400514.726100.640905.828304.83290HepG2TARDBP
GAMTENSG00000130005.7691.751101312.42250-0.9239014.7740012.87920HepG2TIA1
GAMTENSG00000130005.71183.06040394.867001.5830010.279009.42170HepG2TIAL1
GAMTENSG00000130005.7768.47150398.403900.9477017.8490016.57820HepG2TRIM56
GAMTENSG00000130005.71621.58870806.783701.007104.724303.54910HepG2TUFM
GAMTENSG00000130005.7432.966401059.50760-1.291106.415305.47640HepG2U2AF1
GAMTENSG00000130005.7434.298601059.44940-1.2866033.8088032.07220HepG2UTP3
GAMTENSG00000130005.7364.56000240.014600.602902.592701.53830HepG2XPO5
GAMTENSG00000130005.71070.26510606.260200.819904.099003.22500HepG2XRN2
GAMTENSG00000130005.7730.698001206.87620-0.7239017.4491016.37000HepG2ZNF622
GAMTENSG00000130005.7107.18600229.88890-1.100803.655302.28080K562AARS
GAMTENSG00000130005.7544.39650310.809500.808506.299505.49620K562AGGF1
GAMTENSG00000130005.7480.70000341.535000.493003.375602.26630K562AKAP8
GAMTENSG00000130005.7511.14010323.411900.660201.991801.43590K562AKAP8L
GAMTENSG00000130005.7152.13510421.20730-1.4692013.9193012.74670K562AQR
GAMTENSG00000130005.7459.95180339.338000.438703.140902.16440K562ATP5C1
GAMTENSG00000130005.781.80160156.68600-0.937702.225001.44840K562BOP1
GAMTENSG00000130005.7578.98580723.81190-0.322102.492401.56740K562CELF1
GAMTENSG00000130005.7345.45220246.017700.489602.980701.60670K562DDX6
GAMTENSG00000130005.7278.76630358.94010-0.364702.044701.40990K562EIF2S2
GAMTENSG00000130005.7173.64510253.50550-0.545902.693501.88360K562EIF4A3
GAMTENSG00000130005.7136.16780263.63190-0.953107.236606.32110K562FXR1
GAMTENSG00000130005.718.2947077.91410-2.090507.127105.87870K562G3BP2
GAMTENSG00000130005.7694.25180478.267200.537504.219703.28880K562GRSF1
GAMTENSG00000130005.777.82390251.28330-1.691008.137407.16350K562HNRNPC
GAMTENSG00000130005.778.99950142.15080-0.847502.990101.70580K562HNRNPK
GAMTENSG00000130005.762.47780135.83590-1.120402.537001.64600K562KRR1
GAMTENSG00000130005.7260.75160149.297600.804403.719202.63750K562MATR3
GAMTENSG00000130005.7475.13390643.81370-0.438303.093501.51050K562NOL12
GAMTENSG00000130005.7461.58190213.184301.114404.836902.98920K562NONO
GAMTENSG00000130005.7402.30790170.402301.239306.053804.41490K562PABPN1
GAMTENSG00000130005.7547.46350252.872201.1143013.0953010.89570K562PPIG
GAMTENSG00000130005.784.49220210.17770-1.314702.780402.02980K562PRPF8
GAMTENSG00000130005.7352.04150642.10070-0.867108.801007.33190K562PUF60
GAMTENSG00000130005.720.3253074.34340-1.870904.709802.78810K562RAVER1
GAMTENSG00000130005.7431.96560312.508200.466903.138702.51300K562RBM15
GAMTENSG00000130005.757.11940151.30680-1.405402.999301.98600K562SF3B1
GAMTENSG00000130005.7293.59570195.022100.590102.905301.84680K562SRFBP1
GAMTENSG00000130005.7263.30110419.99420-0.673706.264104.92210K562SRPK2
GAMTENSG00000130005.7232.99580134.656700.790904.492703.09950K562SRSF5
GAMTENSG00000130005.728.2516076.48340-1.436803.810901.98280K562TAF15
GAMTENSG00000130005.7231.14470139.127100.732303.681802.71940K562TIA1
GAMTENSG00000130005.7385.91050230.403500.744004.034702.84780K562TRIM56
GAMTENSG00000130005.7394.83340260.456900.600103.576901.95420K562TRIP6
GAMTENSG00000130005.738.2311078.01430-1.029002.992402.15750K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GAMT is not available on ENCORE database.





6 RBPs can affect the splicing of GAMT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGAMTENSG00000130005.7chr19-139974713999371399126139919414012941401542-0.240000.000010.00378excludedHepG2TAF15
SEGAMTENSG00000130005.7chr19-139974713999371399126139919414012941401542-0.204000.000010.00201excludedHepG2SRSF9
MXEGAMTENSG00000130005.7chr19-13995221399586139974713999371399126139919414012941401542-0.075000.000060.011692includedHepG2FUBP3
MXEGAMTENSG00000130005.7chr19-13995221399586139979113999371399126139919414012941401542-0.079000.000010.002292includedHepG2FUBP3
MXEGAMTENSG00000130005.7chr19-139952213995861399747139993713991261399194140129414015420.061000.000040.012351includedHepG2SMNDC1
MXEGAMTENSG00000130005.7chr19-139952213995861399791139993713991261399194140129414015420.057000.000220.041411includedHepG2SMNDC1
MXEGAMTENSG00000130005.7chr19-139952213995861399791139993713991261399194140129414015420.077000.000000.000001includedHepG2TIAL1
MXEGAMTENSG00000130005.7chr19-139952213995861399747139993713991261399194140129414015420.076000.000000.000021includedHepG2TIAL1
MXEGAMTENSG00000130005.7chr19-139952213995861399791139993713991261399194140129414015420.057000.000170.050151includedHepG2SND1
MXEGAMTENSG00000130005.7chr19-139952213995861399747139993713991261399194140129414015420.068000.000010.004361includedHepG2SND1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GAMT is not avaliable on ENCORE database.