ERP29

General Information

Gene Name       : ERP29
Gene ID             : ENSG00000089248.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ERP29)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ERP29ENSG00000089248.637.8472.1254.98ENCSR000AEF
HepG2ERP29ENSG00000089248.6173.99129.97151.98ENCSR985KAT
K562ERP29ENSG00000089248.679.5671.3175.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
ERP29A305-406A1BGKcLV40-31, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ERP29K562CRISPRERP29-BGKcLV40-31,ERP29-BGKcLV40-32NT-BGKcLV40-1,NT-BGKcLV40-268.4,66.5SubmittingENCORE2
ERP29HepG2CRISPRBGHcLV41-51,BGHcLV41-52BGHcLV41-1,BGHcLV41-20.0,0.0NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
ERP29Product_ID: A305-406A
Lot_ID: 1
Source: Bethyl Labs
Target Name: ERP29-human		 ERP29-K562-CRISPR-A305-406A.png<br>Caption: Western blot following CRISPR against ERP29 in K562 whole cell lysate using ERP29 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against ERP29. ERP29 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for ERP29 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ERP29 RNA is bound by 23 proteins.  







eCLIP assay for ERP29 is not avaliable on ENCORE database.





23 proteins are bound to ERP29 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12112460560112460605+3'-UTR4.031157.48372HepG2DDX6
chr12112460048112460125+3'-UTR,CDS5.4319612.78601HepG2RPS3
chr12112460179112460223+3'-UTR,CDS3.6687418.90756K562YBX3
chr12112459953112459967+3'-UTR,CDS,intron-Proximal5.3134212.80856HepG2SND1
chr12112460085112460140+3'-UTR,CDS5.3684916.71333K562SND1
chr12112460551112460586+3'-UTR3.255163.92899HepG2PRPF4
chr12112460168112460210+3'-UTR,CDS4.245368.63502HepG2RPS3
chr12112460226112460313+3'-UTR,CDS3.3925812.91693K562LIN28B
chr12112459998112460085+3'-UTR,CDS5.5790344.60170K562SND1
chr12112460657112460683+3'-UTR3.083879.53765HepG2LIN28B
chr12112460547112460592+3'-UTR3.186714.20283K562APOBEC3C
chr12112460289112460356+3'-UTR,CDS4.2110715.83153HepG2SND1
chr12112460141112460242+3'-UTR,CDS5.2039040.94044HepG2SND1
chr12112459994112460046+3'-UTR,CDS4.8142625.70538HepG2SND1
chr12112460167112460235+3'-UTR,CDS4.0483910.23724HepG2LIN28B
chr12112460046112460079+3'-UTR,CDS4.8989222.27195HepG2SND1
chr12112460140112460232+3'-UTR,CDS4.3091112.23885K562SND1
chr12112460686112460760+3'-UTR3.4069510.51791K562UPF1
chr12112460166112460226+3'-UTR,CDS3.3600210.26018K562LIN28B
chr12112460079112460141+3'-UTR,CDS4.8526122.03577HepG2SND1
chr12112460473112460554+3'-UTR3.073355.13929K562RBM15
chr12112460471112460520+3'-UTR4.8992520.07958HepG2PRPF4
chr12112460470112460570+3'-UTR3.596997.05384HepG2TIAL1
chr12112460242112460289+3'-UTR,CDS4.1764613.87244HepG2SND1
chr12112460428112460561+3'-UTR,CDS3.0659221.60565K562PUM2
chr12112460149112460247+3'-UTR,CDS3.116093.65458K562METAP2
chr12112460396112460460+3'-UTR,CDS3.541357.58409K562UCHL5
chr12112460470112460599+3'-UTR3.7076314.20014HepG2UPF1
chr12112460557112460665+3'-UTR4.2043244.15486K562PABPC4
chr12112460520112460551+3'-UTR4.4738213.04092HepG2PRPF4
chr12112460469112460597+3'-UTR3.4355615.06928HepG2LSM11
chr12112460470112460607+3'-UTR5.47485400.00000HepG2LARP4
chr12112460599112460686+3'-UTR3.5957317.09743K562UPF1
chr12112459952112459967+3'-UTR,CDS,intron-Proximal3.345667.61398K562SND1
chr12112460474112460599+3'-UTR5.3622651.17469K562UPF1
chr12112460232112460286+3'-UTR,CDS3.485757.86271K562SND1
chr12112460159112460179+3'-UTR,CDS3.7117414.60611K562YBX3
chr12112460476112460541+3'-UTR4.1288236.88333K562PABPC4
chr12112460607112460669+3'-UTR4.3247619.12150HepG2LARP4
chr12112460619112460650+3'-UTR3.1823312.72552K562YBX3
chr12112460471112460609+3'-UTR4.0438564.17894HepG2DDX55
chr12112460235112460306+3'-UTR,CDS3.211977.50639HepG2LIN28B
chr12112460331112460420+3'-UTR,CDS3.568273.02618HepG2UCHL5
chr12112460480112460560+3'-UTR4.3470932.48196HepG2DDX6
chr12112460716112460760+3'-UTR3.180035.05178HepG2SUB1
chr12112459953112459977+3'-UTR,CDS,intron-Proximal4.443219.84602K562PABPC4
chr12112460541112460557+3'-UTR4.7967711.24462K562PABPC4
chr12112460473112460480+3'-UTR3.3057210.59331HepG2TIA1
chr12112460348112460417+3'-UTR,CDS3.244755.00580K562METAP2
chr12112460473112460531+3'-UTR4.3323152.12755K562DDX6
chr12112460494112460584+3'-UTR3.4015715.90015HepG2SUB1
chr12112460468112460604+3'-UTR3.6870811.56554HepG2AKAP1
chr12112460470112460547+3'-UTR3.0575911.52414K562APOBEC3C
chr12112460283112460337+3'-UTR,CDS3.947419.04309K562UPF1
chr12112460531112460601+3'-UTR4.9019456.69802K562DDX6
chr12112460480112460544+3'-UTR3.5707121.61043HepG2TIA1
chr12112457592112457654+5'-UTR,CDS,intron-Distal3.649349.59666HepG2RPS3
chr12112457672112457689+5'-UTR,CDS,intron-Distal4.6603711.23424HepG2SND1
chr12112451243112451390+5'-UTR,CDS3.7338515.55103HepG2PCBP1
chr12112451247112451387+5'-UTR,CDS3.3126216.93715HepG2RPS3
chr12112457663112457699+5'-UTR,CDS,intron-Distal,intron-Proximal3.358657.37928K562SND1
chr12112457601112457649+5'-UTR,CDS,intron-Distal5.8736711.52157HepG2SND1
chr12112457689112457698+5'-UTR,CDS,intron-Distal4.2219310.37257HepG2SND1
chr12112451407112451461+CDS,intron-Proximal4.618725.32906HepG2AQR
chr12112451269112451372+CDS3.8762726.50199K562PCBP1
chr12112451395112451460+CDS,intron-Proximal3.119068.81836HepG2PRPF8
chr12112451394112451413+CDS5.2610010.50319K562PABPC4
chr12112451409112451425+CDS,intron-Proximal3.442345.75231K562AQR
chr12112451425112451485+intron-Proximal4.804369.04436K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ERP29 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ERP29 is not available on ENCORE database.

  • 85 RBPs can affect the levels of ERP29.  








The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.





85 RBPs can affect the gene expression of ERP29 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ERP29ENSG00000089248.62690.487703502.44970-0.380507.360806.17610HepG2AKAP8L
ERP29ENSG00000089248.63319.567804320.45710-0.380203.307102.44810HepG2ASCC1
ERP29ENSG00000089248.64156.440805288.40520-0.347502.727202.04630HepG2AUH
ERP29ENSG00000089248.62642.921603942.43840-0.577008.365607.39370HepG2BOP1
ERP29ENSG00000089248.63955.223005138.99960-0.377702.459701.54720HepG2CCAR1
ERP29ENSG00000089248.65004.914004104.782000.285902.154601.46640HepG2CIRBP
ERP29ENSG00000089248.62535.594003485.32370-0.4590013.4767012.23760HepG2CKAP4
ERP29ENSG00000089248.65848.043904126.565300.5029011.6436010.50060HepG2CELF1
ERP29ENSG00000089248.62782.606103224.09830-0.212503.218802.32420HepG2DDX19B
ERP29ENSG00000089248.63245.561002529.116200.359703.696002.92110HepG2DDX21
ERP29ENSG00000089248.61886.367402499.91120-0.406302.908601.58870HepG2DDX27
ERP29ENSG00000089248.62087.743302671.91560-0.355902.536901.79260HepG2DDX55
ERP29ENSG00000089248.65586.531804297.410100.378402.781602.16230HepG2DDX6
ERP29ENSG00000089248.62542.139603335.19400-0.391707.709806.68780HepG2DKC1
ERP29ENSG00000089248.65429.497404130.423100.394403.506002.84330HepG2EIF2S1
ERP29ENSG00000089248.63100.408404377.33660-0.497604.174203.18570HepG2EIF4G1
ERP29ENSG00000089248.69480.174106072.397700.6425012.9430011.80020HepG2ETF1
ERP29ENSG00000089248.63270.854902472.859500.403402.392101.34850HepG2FUS
ERP29ENSG00000089248.62990.912104102.89810-0.456104.101303.33430HepG2GPKOW
ERP29ENSG00000089248.62894.935503328.18920-0.201202.414001.49420HepG2HDGF
ERP29ENSG00000089248.63130.855904077.42460-0.381104.093502.99160HepG2HNRNPA2B1
ERP29ENSG00000089248.67338.443505424.018400.436003.221102.32290HepG2LARP4
ERP29ENSG00000089248.63262.192904607.86890-0.498305.201704.30820HepG2MAGOH
ERP29ENSG00000089248.63397.346504742.46550-0.481204.575303.77180HepG2NCBP2
ERP29ENSG00000089248.64400.350503471.781800.341803.382402.55500HepG2NSUN2
ERP29ENSG00000089248.63125.031102291.723500.447305.266004.14650HepG2PARN
ERP29ENSG00000089248.63166.147404072.76460-0.363307.269406.36140HepG2PCBP1
ERP29ENSG00000089248.62833.869502065.117800.456403.932803.06970HepG2PPIL4
ERP29ENSG00000089248.62489.597504144.28690-0.7352025.3424024.00610HepG2PTBP1
ERP29ENSG00000089248.63369.356704458.18770-0.404004.581403.85940HepG2PUM1
ERP29ENSG00000089248.62767.566003550.74850-0.359507.806106.85870HepG2PUS1
ERP29ENSG00000089248.63087.193304488.15900-0.539804.694403.91210HepG2QKI
ERP29ENSG00000089248.61315.443202258.06340-0.779505.245604.29170HepG2RAVER1
ERP29ENSG00000089248.62784.681105075.27550-0.866009.960409.11420HepG2RBM22
ERP29ENSG00000089248.63537.663404612.11310-0.382607.902607.07240HepG2NELFE
ERP29ENSG00000089248.63498.331204295.70230-0.296205.135704.33010HepG2RECQL
ERP29ENSG00000089248.62951.262803730.96800-0.338202.881602.18610HepG2RPLP0
ERP29ENSG00000089248.6749.953302038.66520-1.4428028.0037026.02260HepG2RRP9
ERP29ENSG00000089248.62720.663703875.56250-0.510406.631205.57750HepG2SF3B1
ERP29ENSG00000089248.63530.952504314.56420-0.289204.853804.10480HepG2SF3B4
ERP29ENSG00000089248.63290.014402404.437900.452305.144604.31290HepG2SMN1
ERP29ENSG00000089248.64517.176005732.11550-0.343602.485502.00150HepG2SRFBP1
ERP29ENSG00000089248.63195.794504170.05310-0.383902.649801.67310HepG2SRSF3
ERP29ENSG00000089248.62661.573203402.72690-0.354406.365605.38030HepG2SRSF7
ERP29ENSG00000089248.63160.020903663.93200-0.213502.985002.41590HepG2SRSF9
ERP29ENSG00000089248.63394.364004976.44660-0.552005.392404.72340HepG2SSB
ERP29ENSG00000089248.63630.344702579.082000.493103.706802.41660HepG2STIP1
ERP29ENSG00000089248.63984.822302659.782600.583105.952805.01790HepG2SUPV3L1
ERP29ENSG00000089248.64596.617404048.155300.183202.010101.51910HepG2TAF15
ERP29ENSG00000089248.63213.668502269.954600.5015012.4693011.39730HepG2TRIM56
ERP29ENSG00000089248.64186.527903502.911600.257103.099002.36910HepG2UPF1
ERP29ENSG00000089248.63258.689902435.366900.420102.336901.42090HepG2UPF2
ERP29ENSG00000089248.64722.575403852.527600.293707.283106.50480HepG2ZNF622
ERP29ENSG00000089248.61571.559202508.39310-0.6746010.903208.59140K562AARS
ERP29ENSG00000089248.610450.952308138.381600.360703.885002.67810K562AKAP8
ERP29ENSG00000089248.64505.988903040.307200.567506.363705.03020K562BOP1
ERP29ENSG00000089248.68636.006507074.773500.287602.456101.53850K562CELF1
ERP29ENSG00000089248.63968.957705050.88310-0.347802.159001.57170K562DDX47
ERP29ENSG00000089248.65060.784603596.374100.4927011.288909.98030K562EIF2S2
ERP29ENSG00000089248.6975.093301695.04260-0.797703.303402.19630K562EIF3A
ERP29ENSG00000089248.61795.403002583.15720-0.524803.154402.04450K562EIF3D
ERP29ENSG00000089248.61799.411702345.11000-0.382105.377904.28140K562EIF3G
ERP29ENSG00000089248.63120.926702652.429000.234602.503201.42450K562EIF4B
ERP29ENSG00000089248.63082.127002570.957700.261503.036401.66960K562EWSR1
ERP29ENSG00000089248.64305.216303259.701500.401204.304703.23080K562FIP1L1
ERP29ENSG00000089248.62571.926303062.97180-0.252103.011602.38410K562FXR1
ERP29ENSG00000089248.61878.481702446.12220-0.380902.336101.69430K562G3BP2
ERP29ENSG00000089248.65761.211204792.457600.265502.560901.83150K562GRSF1
ERP29ENSG00000089248.64593.895703782.080800.280402.371601.38110K562HNRNPA1
ERP29ENSG00000089248.61817.299202744.62630-0.594809.473108.42170K562HNRNPC
ERP29ENSG00000089248.61943.994802450.98100-0.334303.219301.97950K562HNRNPF
ERP29ENSG00000089248.66657.849804419.682600.591008.646507.25760K562HSPD1
ERP29ENSG00000089248.62140.038902657.89530-0.312602.889801.46550K562LARP7
ERP29ENSG00000089248.61956.123502992.39890-0.613309.380707.55150K562PCBP2
ERP29ENSG00000089248.62224.352303426.24370-0.623207.311805.95930K562PCBP3
ERP29ENSG00000089248.61572.164402628.04180-0.7412015.7706013.93980K562POLR2G
ERP29ENSG00000089248.61650.108602348.34460-0.509105.296904.25910K562PRPF8
ERP29ENSG00000089248.61742.597803267.71960-0.9070022.4747020.65200K562PTBP1
ERP29ENSG00000089248.69352.353907641.702200.291302.590202.06110K562PUS1
ERP29ENSG00000089248.62540.268203132.99840-0.302602.605301.79160K562RBM22
ERP29ENSG00000089248.62678.285903297.06250-0.299902.305201.32800K562NELFE
ERP29ENSG00000089248.61537.735002391.57730-0.637205.352304.21180K562RPS19
ERP29ENSG00000089248.62089.332403108.05260-0.573004.686103.33790K562RPS3
ERP29ENSG00000089248.61772.460402421.00050-0.449803.259301.68050K562SDAD1
ERP29ENSG00000089248.63634.614304559.48620-0.327106.770805.37910K562SRPK2
ERP29ENSG00000089248.62483.386603203.52750-0.367404.438203.54690K562SRSF1
ERP29ENSG00000089248.63765.838703025.670600.315602.783701.73120K562SRSF5
ERP29ENSG00000089248.63213.621502418.997400.409703.446401.99120K562SSB
ERP29ENSG00000089248.61983.277802549.04840-0.362103.432901.64270K562TBRG4
ERP29ENSG00000089248.64008.538003127.337400.358004.335703.27690K562TIA1
ERP29ENSG00000089248.61964.355402448.23620-0.317703.541102.63180K562U2AF2
ERP29ENSG00000089248.63397.490404254.99600-0.324704.032803.02500K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.





24 RBPs can affect the splicing of ERP29 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEERP29ENSG00000089248.6chr12+1124574861124576851124512831124514131124599531124609720.054000.002230.03982includedK562SRSF1
SEERP29ENSG00000089248.6chr12+112457519112457698112451119112451413112459953112460972-0.125000.000080.04036excludedK562XRN2
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.068000.000120.08972excludedK562TROVE2
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.125000.000000.00000excludedK562WDR43
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124612550.060000.000000.00000includedHepG2AKAP1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112461255-0.068000.000030.00063excludedK562AQR
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124609720.059000.000570.02494includedK562FXR1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.067000.000330.06629excludedK562HNRNPA1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.057000.000090.02446excludedK562DROSHA
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.067000.000450.04010excludedK562SUPV3L1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.069000.000080.01897excludedK562NSUN2
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124612550.054000.000030.00272includedHepG2PTBP1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.123000.000000.00002excludedK562UCHL5
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.054000.000200.03934excludedK562LARP4
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.072000.000160.01259excludedK562EFTUD2
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.107000.000000.00939excludedK562EXOSC5
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124612550.076000.000000.00000includedHepG2SRSF1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.078000.000000.00012excludedK562HNRNPUL1
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124609720.051000.000090.05012includedHepG2GRSF1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.113000.000000.00000excludedK562UPF1
SEERP29ENSG00000089248.6chr12+1124575591124576981124511191124514131124599531124612550.052000.000010.00290includedHepG2TAF15
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112461255-0.058000.003070.08717excludedK562TARDBP
SEERP29ENSG00000089248.6chr12+112457573112457698112451119112451413112459953112461255-0.072000.000100.02643excludedHepG2DDX55
SEERP29ENSG00000089248.6chr12+112457592112457698112451119112451413112459953112461255-0.066000.000150.05639excludedHepG2XRN2
SEERP29ENSG00000089248.6chr12+112457573112457698112451119112451413112459953112461255-0.070000.000760.09879excludedK562NPM1
SEERP29ENSG00000089248.6chr12+112457559112457698112451119112451413112459953112460972-0.126000.000000.00010excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ERP29 is not avaliable on ENCORE database.