CNTNAP1

General Information

Gene Name       : CNTNAP1
Gene ID             : ENSG00000108797.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNTNAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNTNAP1ENSG00000108797.116.709.588.14ENCSR000AEF
HepG2CNTNAP1ENSG00000108797.1113.608.4011.00ENCSR985KAT
K562CNTNAP1ENSG00000108797.110.640.930.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNTNAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNTNAP1 RNA is bound by 10 proteins.  







eCLIP assay for CNTNAP1 is not avaliable on ENCORE database.





10 proteins are bound to CNTNAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174084976540849816+3'-UTR,CDS3.367223.30795HepG2SND1
chr174084769740847754+3'-UTR,CDS3.779864.67599HepG2SND1
chr174085129840851404+3'-UTR4.286804.20997HepG2UPF1
chr174085094740851031+3'-UTR4.369396.53456HepG2PCBP2
chr174083468640834773+5'-UTR3.968113.40229HepG2CSTF2T
chr174083474540834830+5'-UTR4.821264.36329HepG2PRPF4
chr174083906140839109+CDS,intron-Proximal4.501078.01338K562AQR
chr174083967040839790+CDS,intron-Proximal3.574993.96535HepG2AQR
chr174083970640839775+CDS,intron-Proximal5.9845612.64691K562AQR
chr174084317940843225+CDS3.223453.05161HepG2PPIG
chr174083892240838969+CDS3.692754.41267HepG2PPIG
chr174084061640840678+CDS,intron-Proximal4.848786.69228HepG2PRPF8
chr174083906340839107+CDS,intron-Proximal4.193513.25089HepG2AQR
chr174083903040839105+CDS,intron-Proximal5.5251517.59192HepG2PRPF8
chr174084369040843788+intron-Distal,intron-Proximal4.171514.58231HepG2HNRNPK
chr174083967740839733+intron-Proximal3.789234.05505HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNTNAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNTNAP1 is not available on ENCORE database.

  • 114 RBPs can affect the levels of CNTNAP1.  








The Knockdown/knockout RNA-Seq assay for CNTNAP1 is not available on ENCORE database.





114 RBPs can affect the gene expression of CNTNAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNTNAP1ENSG00000108797.7488.04430947.96770-0.957804.369203.20590HepG2ABCF1
CNTNAP1ENSG00000108797.71724.68370899.194400.9395011.2172010.21570HepG2AKAP1
CNTNAP1ENSG00000108797.7614.21950854.80600-0.476802.754601.35480HepG2ATP5C1
CNTNAP1ENSG00000108797.7414.36990619.49600-0.580203.745102.65640HepG2BCCIP
CNTNAP1ENSG00000108797.7402.78980538.25840-0.418302.254501.44340HepG2BCLAF1
CNTNAP1ENSG00000108797.7166.62680475.75550-1.5136019.0064017.64610HepG2BOP1
CNTNAP1ENSG00000108797.71585.22310709.882001.1589023.4714020.36400HepG2BUD13
CNTNAP1ENSG00000108797.7514.86970800.09660-0.636006.970505.81750HepG2CALR
CNTNAP1ENSG00000108797.72117.649601267.623800.740207.075905.50450HepG2CCAR1
CNTNAP1ENSG00000108797.7532.80010706.82680-0.407802.265601.56110HepG2CIRBP
CNTNAP1ENSG00000108797.7497.47380825.07810-0.7299010.079008.97190HepG2CKAP4
CNTNAP1ENSG00000108797.7355.53910795.83230-1.162509.891808.47810HepG2CNOT7
CNTNAP1ENSG00000108797.71059.48650436.762001.2783021.9651020.26360HepG2CPSF6
CNTNAP1ENSG00000108797.7216.58470382.60810-0.820906.319904.79010HepG2CSTF2
CNTNAP1ENSG00000108797.7648.54770827.64050-0.351802.866101.68790HepG2DDX1
CNTNAP1ENSG00000108797.7602.35530891.41850-0.565505.363904.45140HepG2DDX21
CNTNAP1ENSG00000108797.7277.87930569.87910-1.036209.024606.87480HepG2DDX27
CNTNAP1ENSG00000108797.7197.20530461.36340-1.2262011.909009.41030HepG2DDX28
CNTNAP1ENSG00000108797.7449.73110861.25100-0.9374010.045108.91850HepG2DDX3X
CNTNAP1ENSG00000108797.7711.90220495.977800.521302.191301.32510HepG2DDX59
CNTNAP1ENSG00000108797.7425.21080819.87300-0.9472011.715609.80840HepG2DDX5
CNTNAP1ENSG00000108797.71581.85980740.089701.0957014.8859013.60590HepG2DDX6
CNTNAP1ENSG00000108797.7531.25050789.48940-0.571506.986106.00370HepG2DKC1
CNTNAP1ENSG00000108797.7978.17150804.449200.282003.078602.39700HepG2DNAJC2
CNTNAP1ENSG00000108797.7485.85870749.30590-0.625002.956101.81260HepG2EFTUD2
CNTNAP1ENSG00000108797.7220.73240785.84810-1.8320025.1040023.22660HepG2EIF4A3
CNTNAP1ENSG00000108797.7981.234801176.07360-0.261302.480001.67900HepG2EIF4G1
CNTNAP1ENSG00000108797.7249.66570806.41650-1.6915036.2289033.63170HepG2EWSR1
CNTNAP1ENSG00000108797.71048.87000652.414600.684907.021305.13520HepG2FAM120A
CNTNAP1ENSG00000108797.7583.11200849.70730-0.543205.123203.63970HepG2FASTKD2
CNTNAP1ENSG00000108797.71309.91400913.151300.520403.225002.01770HepG2FUS
CNTNAP1ENSG00000108797.71008.63960735.669800.455203.097802.39560HepG2G3BP1
CNTNAP1ENSG00000108797.7585.63700841.49480-0.522902.838601.80490HepG2GNB2L1
CNTNAP1ENSG00000108797.7906.82480495.083200.873107.344606.33200HepG2GPKOW
CNTNAP1ENSG00000108797.71389.70170787.855500.8187020.2090018.01260HepG2HDGF
CNTNAP1ENSG00000108797.71219.02740819.306400.573206.300205.38350HepG2HNRNPA1
CNTNAP1ENSG00000108797.7885.124201095.58820-0.307803.099602.11720HepG2HNRNPA2B1
CNTNAP1ENSG00000108797.7302.55130911.35500-1.5908030.0000028.00890HepG2HNRNPC
CNTNAP1ENSG00000108797.71351.44210745.391200.8583011.8398010.49350HepG2HNRNPK
CNTNAP1ENSG00000108797.71445.972401085.974600.412906.872005.85390HepG2HNRNPL
CNTNAP1ENSG00000108797.7425.98400660.11740-0.631904.146403.00240HepG2HNRNPM
CNTNAP1ENSG00000108797.71456.68310905.327600.6861015.2264013.89660HepG2HNRNPU
CNTNAP1ENSG00000108797.72204.267001009.623201.1264015.5793012.87730HepG2HSPD1
CNTNAP1ENSG00000108797.71177.77880747.722300.655406.535405.53730HepG2IGF2BP2
CNTNAP1ENSG00000108797.71366.55490758.715100.848808.722406.45790HepG2KHDRBS1
CNTNAP1ENSG00000108797.7468.11230752.21160-0.684303.327302.21600HepG2KHSRP
CNTNAP1ENSG00000108797.71083.21390754.364400.521908.998507.25210HepG2KIF1C
CNTNAP1ENSG00000108797.7608.92010865.64190-0.507504.136902.65510HepG2LIN28B
CNTNAP1ENSG00000108797.7564.83580827.07460-0.550203.735001.75010HepG2LSM11
CNTNAP1ENSG00000108797.7159.52240793.54010-2.3145029.9269027.94970HepG2MAGOH
CNTNAP1ENSG00000108797.71029.47440797.920700.367501.940301.40720HepG2MATR3
CNTNAP1ENSG00000108797.7806.82620481.901700.743404.933403.61530HepG2MTPAP
CNTNAP1ENSG00000108797.71199.06130650.217500.8828013.2432010.63860HepG2NAA15
CNTNAP1ENSG00000108797.7649.99830418.948900.633605.120004.11480HepG2NSUN2
CNTNAP1ENSG00000108797.7427.25490727.51580-0.767904.371003.23970HepG2PABPC1
CNTNAP1ENSG00000108797.7607.02440896.08420-0.561903.873002.89030HepG2PARN
CNTNAP1ENSG00000108797.7546.10700864.39240-0.662504.259502.98800HepG2PCBP2
CNTNAP1ENSG00000108797.7209.53850469.78270-1.1648011.240209.76830HepG2PRPF8
CNTNAP1ENSG00000108797.7531.12510763.30710-0.523203.545802.94330HepG2PTBP1
CNTNAP1ENSG00000108797.71052.633201197.85540-0.186501.825301.32180HepG2PUM1
CNTNAP1ENSG00000108797.7410.62680840.50540-1.0334022.9718021.51700HepG2PUS1
CNTNAP1ENSG00000108797.7209.14590834.04270-1.9956021.7313019.93650HepG2RAVER1
CNTNAP1ENSG00000108797.71529.778901062.425700.525904.060803.04490HepG2RBM15
CNTNAP1ENSG00000108797.7235.12740961.08500-2.0312025.1502023.90350HepG2RBM22
CNTNAP1ENSG00000108797.71109.81360791.234500.488005.152104.34530HepG2RECQL
CNTNAP1ENSG00000108797.7368.64200622.77310-0.756507.597106.54960HepG2RPLP0
CNTNAP1ENSG00000108797.7588.50680819.49590-0.477702.370701.49410HepG2RPS10
CNTNAP1ENSG00000108797.7418.31110710.16270-0.763604.693903.91690HepG2RPS19
CNTNAP1ENSG00000108797.7482.73570916.80260-0.9254011.348109.81980HepG2RPS2
CNTNAP1ENSG00000108797.7163.08650464.70280-1.5107015.9403014.33260HepG2RRP9
CNTNAP1ENSG00000108797.7520.27870907.67400-0.802905.784403.62200HepG2RTF1
CNTNAP1ENSG00000108797.7349.86770712.57590-1.026207.413305.89360HepG2SERBP1
CNTNAP1ENSG00000108797.7170.44780467.63900-1.4561017.1177015.52440HepG2SF3B1
CNTNAP1ENSG00000108797.7598.98430794.57330-0.407702.813802.21830HepG2SF3B4
CNTNAP1ENSG00000108797.71189.57490497.022101.259004.204702.35470HepG2SFPQ
CNTNAP1ENSG00000108797.7583.07120940.15820-0.6892013.2293011.98420HepG2SMN1
CNTNAP1ENSG00000108797.7188.524001085.46540-2.5255034.7160033.46340HepG2SRFBP1
CNTNAP1ENSG00000108797.7423.72980829.41470-0.9689010.012909.23820HepG2SRSF1
CNTNAP1ENSG00000108797.7303.33340503.21490-0.730303.914702.70070HepG2SRSF3
CNTNAP1ENSG00000108797.7953.204301114.13350-0.225101.945901.40930HepG2SRSF5
CNTNAP1ENSG00000108797.7404.73610567.94010-0.488804.837703.95710HepG2SRSF7
CNTNAP1ENSG00000108797.7503.22090674.81800-0.423302.447601.92140HepG2SRSF9
CNTNAP1ENSG00000108797.7475.20370942.36280-0.9877010.795209.91070HepG2SSB
CNTNAP1ENSG00000108797.71447.727201267.097600.192201.870701.34060HepG2SUCLG1
CNTNAP1ENSG00000108797.72179.55340745.655201.5474023.7458022.32760HepG2TAF15
CNTNAP1ENSG00000108797.7799.53840460.565300.795708.561807.38450HepG2TARDBP
CNTNAP1ENSG00000108797.71350.92120685.001800.9797017.5373015.50310HepG2TIA1
CNTNAP1ENSG00000108797.7491.32730879.58970-0.8401012.6866011.75060HepG2TIAL1
CNTNAP1ENSG00000108797.7612.11100887.56550-0.536107.467906.61820HepG2TRIM56
CNTNAP1ENSG00000108797.7812.38580579.771800.486602.932701.31940HepG2TROVE2
CNTNAP1ENSG00000108797.7261.85310818.52540-1.6443011.4456010.14220HepG2U2AF1
CNTNAP1ENSG00000108797.7251.42140358.16010-0.510502.812802.04640HepG2UCHL5
CNTNAP1ENSG00000108797.71264.27750943.788300.421705.445804.01900HepG2UTP18
CNTNAP1ENSG00000108797.7540.34910886.46150-0.714207.287806.39200HepG2UTP3
CNTNAP1ENSG00000108797.7459.08600716.15290-0.641503.944702.63180HepG2XPO5
CNTNAP1ENSG00000108797.7673.332001009.81440-0.584705.258104.56550HepG2ZNF622
CNTNAP1ENSG00000108797.7153.33940257.95550-0.750404.348303.66540K562AGGF1
CNTNAP1ENSG00000108797.7136.1087081.038500.748002.926801.94100K562BCLAF1
CNTNAP1ENSG00000108797.7140.2899083.439800.749502.440801.62650K562BOP1
CNTNAP1ENSG00000108797.7255.32110151.099700.756702.818301.74250K562CNOT7
CNTNAP1ENSG00000108797.7145.6273088.713700.715002.603001.84130K562CPSF6
CNTNAP1ENSG00000108797.7289.02130210.488300.457302.329101.43500K562CELF1
CNTNAP1ENSG00000108797.7202.59650288.80910-0.511502.720801.85520K562DKC1
CNTNAP1ENSG00000108797.7131.7668074.437200.823802.802101.88350K562EFTUD2
CNTNAP1ENSG00000108797.7190.32530102.354200.894804.966204.04250K562EIF2S2
CNTNAP1ENSG00000108797.7130.9311076.523800.774702.628301.73980K562FTO
CNTNAP1ENSG00000108797.761.94040111.91890-0.853502.244401.68900K562FXR1
CNTNAP1ENSG00000108797.7161.92680101.981500.666902.876201.71310K562GLRX3
CNTNAP1ENSG00000108797.7155.1093084.694300.872803.587402.68780K562GPKOW
CNTNAP1ENSG00000108797.7200.20830136.387000.553702.017501.36590K562GRSF1
CNTNAP1ENSG00000108797.7153.6134072.332601.086503.827402.71680K562KRR1
CNTNAP1ENSG00000108797.7220.80620319.09890-0.531202.920101.97810K562MBNL1
CNTNAP1ENSG00000108797.7145.0087082.673400.810503.053702.13200K562METAP2
CNTNAP1ENSG00000108797.7214.39740107.222100.999606.638605.43560K562MTPAP
CNTNAP1ENSG00000108797.7216.63690119.122900.862703.221602.42100K562NSUN2
CNTNAP1ENSG00000108797.7261.11410141.461400.884204.792303.70000K562PCBP3
CNTNAP1ENSG00000108797.7193.62660108.510300.835304.103703.12520K562POLR2G
CNTNAP1ENSG00000108797.7120.2698069.590900.789202.563601.61270K562RCC2
CNTNAP1ENSG00000108797.7294.14610146.844801.002102.812601.49540K562SFPQ
CNTNAP1ENSG00000108797.765.62250108.83240-0.729802.260701.51740K562SYNCRIP
CNTNAP1ENSG00000108797.7143.8514081.866200.813103.236902.47210K562TARDBP
CNTNAP1ENSG00000108797.7137.7200078.973100.802203.059902.19100K562TIA1
CNTNAP1ENSG00000108797.7137.5981073.306000.908403.298702.27080K562TIAL1
CNTNAP1ENSG00000108797.7128.3662077.932800.719902.182801.35780K562TRIM56
CNTNAP1ENSG00000108797.7112.4451056.965800.981003.833402.88810K562U2AF2
CNTNAP1ENSG00000108797.7253.73460126.309301.006307.777406.64800K562UPF1
CNTNAP1ENSG00000108797.7200.16810108.077600.889005.047103.84860K562WDR3
CNTNAP1ENSG00000108797.7164.02160112.397400.545202.304801.52640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNTNAP1 is not available on ENCORE database.





1 RBPs can affect the splicing of CNTNAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECNTNAP1ENSG00000108797.7chr17+4084957140849817408499204084996840849291408493854085063540851157-0.175000.001940.024862includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNTNAP1 is not avaliable on ENCORE database.