CLPTM1

General Information

Gene Name       : CLPTM1
Gene ID             : ENSG00000104853.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CLPTM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLPTM1ENSG00000104853.1517.9634.8226.39ENCSR000AEF
HepG2CLPTM1ENSG00000104853.1563.2438.6350.94ENCSR985KAT
K562CLPTM1ENSG00000104853.1558.4359.3158.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLPTM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLPTM1 RNA is bound by 23 proteins.  







eCLIP assay for CLPTM1 is not avaliable on ENCORE database.





23 proteins are bound to CLPTM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194549561845495661+3'-UTR,CDS,intron-Proximal3.002543.35239HepG2IGF2BP1
chr194549632445496406+3'-UTR3.928339.18768K562PABPC4
chr194549628745496368+3'-UTR,CDS4.6644510.03141HepG2LARP4
chr194549631745496393+3'-UTR3.235707.26220HepG2PCBP2
chr194549616445496320+3'-UTR,CDS6.1339535.40911HepG2UPF1
chr194549551345495561+3'-UTR,CDS4.5459411.62530K562YBX3
chr194549617445496308+3'-UTR,CDS3.3446121.73081HepG2PCBP2
chr194547634345476361+3'-UTR,5'-UTR,CDS,intron-Proximal4.025308.72318K562YBX3
chr194549630045496405+3'-UTR,CDS3.693869.87397K562UPF1
chr194549647545496562+3'-UTR3.206557.61429HepG2PCBP2
chr194549622545496287+3'-UTR,CDS3.669278.83898HepG2LARP4
chr194549623145496299+3'-UTR,CDS3.774716.21364HepG2AKAP1
chr194549649345496546+3'-UTR4.173416.31568HepG2LARP4
chr194549633845496385+3'-UTR5.206408.73200HepG2UPF1
chr194547636145476404+3'-UTR,5'-UTR,CDS3.194897.42778K562YBX3
chr194549624945496324+3'-UTR,CDS4.747619.84602K562PABPC4
chr194549644945496493+3'-UTR3.573994.08867HepG2LARP4
chr194549618345496288+3'-UTR,CDS5.5002612.18920HepG2PCBP1
chr194549636845496403+3'-UTR3.260784.74431HepG2LARP4
chr194545864845458726+5'-UTR,CDS,intron-Distal,intron-Proximal3.8154522.41496HepG2DDX3X
chr194546521945465284+5'-UTR,CDS,intron-Proximal3.115367.42203HepG2RPS3
chr194546531345465367+5'-UTR,CDS,intron-Proximal4.720534.94356HepG2PRPF8
chr194545864845458725+5'-UTR,CDS,intron-Distal,intron-Proximal5.4859511.64578HepG2RPS3
chr194545863945458725+5'-UTR,CDS,intron-Distal,intron-Proximal3.401115.62898K562PUM1
chr194546521945465284+5'-UTR,CDS,intron-Proximal4.525369.61116K562ZNF622
chr194549383945493888+CDS,intron-Proximal4.406474.28193HepG2AQR
chr194549452045494560+CDS,intron-Distal3.199184.90834HepG2SND1
chr194548855045488596+CDS,intron-Proximal3.870909.00124HepG2PRPF8
chr194549590045495951+CDS3.218373.79741HepG2GRWD1
chr194545869745458724+CDS,intron-Distal3.548043.61259K562ZNF622
chr194549593545495963+CDS3.790953.22721K562YBX3
chr194549456045494605+CDS,intron-Distal4.110745.23222HepG2SND1
chr194547775645477835+CDS,intron-Distal3.791047.03378HepG2GRWD1
chr194549129045491378+CDS,intron-Proximal4.077177.09030K562SF3B4
chr194549046045490615+CDS3.739639.80079HepG2GRWD1
chr194548062145480696+CDS3.477057.44661K562YBX3
chr194549590145495984+CDS4.220525.03100HepG2SND1
chr194548071545480778+CDS,intron-Proximal5.509925.69951K562AQR
chr194549065145490738+CDS,intron-Proximal4.3917317.91822HepG2PRPF8
chr194548977545489830+CDS3.289963.90018HepG2SND1
chr194549417545494197+CDS3.395613.61259K562ZNF622
chr194548065045480716+CDS3.902414.67599HepG2SND1
chr194548972445489820+CDS3.221647.04063K562YBX3
chr194545875345458797+intron-Distal,intron-Proximal3.809934.34418HepG2RBM22
chr194548990445490038+intron-Distal,intron-Proximal4.3903617.32287HepG2HNRNPK
chr194549145645491544+intron-Distal,intron-Proximal4.524855.98353HepG2EFTUD2
chr194548294745483099+intron-Distal4.788136.44072HepG2HNRNPM
chr194548992245490050+intron-Distal,intron-Proximal3.986636.44564K562HNRNPK
chr194548295745483026+intron-Distal4.550944.27460K562HNRNPM
chr194548996045490033+intron-Distal3.814924.62831HepG2PCBP2
chr194549108245491179+intron-Distal3.780833.06084HepG2HNRNPK
chr194548990445490059+intron-Distal,intron-Proximal5.3963214.19981HepG2DDX59
chr194548072545480771+intron-Proximal3.918753.44423K562BUD13
chr194548841245488474+intron-Proximal5.3726215.55949K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLPTM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLPTM1 is not available on ENCORE database.

  • 120 RBPs can affect the levels of CLPTM1.  








The Knockdown/knockout RNA-Seq assay for CLPTM1 is not available on ENCORE database.





120 RBPs can affect the gene expression of CLPTM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLPTM1ENSG00000104853.113198.954902344.245500.448403.811902.71540HepG2ABCF1
CLPTM1ENSG00000104853.111874.418901620.068300.210302.403901.83030HepG2ACO1
CLPTM1ENSG00000104853.112683.486501626.862000.721907.762706.91930HepG2AKAP1
CLPTM1ENSG00000104853.112244.111501648.845400.444603.471102.31190HepG2AKAP8
CLPTM1ENSG00000104853.112194.386201627.627500.430907.737506.53150HepG2AKAP8L
CLPTM1ENSG00000104853.112586.379301792.888800.5285012.2152010.95160HepG2AUH
CLPTM1ENSG00000104853.115095.002802272.741401.1645031.8148030.16920HepG2BOP1
CLPTM1ENSG00000104853.112173.753301278.828400.7653010.341508.93220HepG2CIRBP
CLPTM1ENSG00000104853.112041.724101619.653200.334005.914705.00930HepG2CKAP4
CLPTM1ENSG00000104853.111244.83810884.202400.493402.523001.79390HepG2CNOT7
CLPTM1ENSG00000104853.112697.693102086.497100.370503.362202.61210HepG2CPSF6
CLPTM1ENSG00000104853.112613.006001929.877300.437104.820303.38400HepG2CPSF7
CLPTM1ENSG00000104853.11535.27360929.00090-0.795406.401804.07550HepG2CSTF2T
CLPTM1ENSG00000104853.111785.409901397.194100.353604.620803.82810HepG2CELF1
CLPTM1ENSG00000104853.111881.485401502.347500.324605.277504.29940HepG2DAZAP1
CLPTM1ENSG00000104853.111429.863101011.826600.498807.122105.37910HepG2DDX1
CLPTM1ENSG00000104853.111280.90920999.870400.357302.923002.22800HepG2DDX21
CLPTM1ENSG00000104853.113184.629801558.234801.0311017.8317016.38880HepG2DDX3X
CLPTM1ENSG00000104853.112640.975401909.979500.467404.935103.60900HepG2DDX5
CLPTM1ENSG00000104853.112015.527601338.970200.589902.998302.35740HepG2DDX6
CLPTM1ENSG00000104853.111340.43340956.933500.486104.996903.70030HepG2DHX30
CLPTM1ENSG00000104853.111820.125301549.950100.231702.429601.78820HepG2DKC1
CLPTM1ENSG00000104853.111305.62750992.138800.396004.831003.92450HepG2DNAJC21
CLPTM1ENSG00000104853.111248.65070983.447800.344304.847304.02300HepG2DNAJC2
CLPTM1ENSG00000104853.111858.075901196.422300.635007.048605.64760HepG2EEF2
CLPTM1ENSG00000104853.111314.62190997.209100.398602.967801.82030HepG2EFTUD2
CLPTM1ENSG00000104853.112542.503801286.773300.9824015.9812014.63240HepG2EIF2S1
CLPTM1ENSG00000104853.112383.850701777.816000.423104.775003.26040HepG2EIF2S2
CLPTM1ENSG00000104853.112641.017501421.836900.8932011.5945010.31340HepG2EIF4A3
CLPTM1ENSG00000104853.112634.782702058.488800.356005.547204.74510HepG2ETF1
CLPTM1ENSG00000104853.113117.705902090.080300.576802.217801.31680HepG2FTO
CLPTM1ENSG00000104853.112183.639601435.175800.605406.657305.61210HepG2FXR1
CLPTM1ENSG00000104853.112181.988001331.019300.713008.114607.00620HepG2G3BP1
CLPTM1ENSG00000104853.111324.28450957.989400.467003.574702.40930HepG2GNB2L1
CLPTM1ENSG00000104853.111268.22790747.996400.761606.325104.19040HepG2HNRNPA0
CLPTM1ENSG00000104853.111255.763901001.644600.326102.449801.83950HepG2HNRNPA1
CLPTM1ENSG00000104853.111941.702101114.167600.801307.096206.02590HepG2HNRNPC
CLPTM1ENSG00000104853.112431.658502030.589600.259903.608802.79840HepG2HNRNPF
CLPTM1ENSG00000104853.113602.392402257.152800.674409.448508.36300HepG2HNRNPLL
CLPTM1ENSG00000104853.111620.250001106.799700.5497010.991509.84950HepG2HNRNPU
CLPTM1ENSG00000104853.112636.730401999.563700.399005.295904.32650HepG2IGF2BP1
CLPTM1ENSG00000104853.112299.803301352.839400.7654010.322609.10770HepG2IGF2BP2
CLPTM1ENSG00000104853.111481.405501130.555300.389807.228006.10280HepG2ILF2
CLPTM1ENSG00000104853.114130.208402577.777700.680006.716205.40720HepG2LARP4
CLPTM1ENSG00000104853.112662.920301435.679500.8912013.3311011.93710HepG2MAGOH
CLPTM1ENSG00000104853.112764.397401443.616900.9372013.1276011.82870HepG2MATR3
CLPTM1ENSG00000104853.112724.335401915.080600.508406.520505.32980HepG2MSI2
CLPTM1ENSG00000104853.112988.292101477.542601.0160016.5014015.04020HepG2NCBP2
CLPTM1ENSG00000104853.111423.214002001.40420-0.491905.377604.35100HepG2NSUN2
CLPTM1ENSG00000104853.111390.838201095.513200.344204.245303.22330HepG2PARN
CLPTM1ENSG00000104853.111685.431001355.976100.313702.383001.81080HepG2PCBP1
CLPTM1ENSG00000104853.111394.28300987.172800.498004.337903.43600HepG2PPIL4
CLPTM1ENSG00000104853.111719.265401379.781700.317303.792203.17430HepG2PTBP1
CLPTM1ENSG00000104853.112126.996601422.065700.580708.077107.13060HepG2PUF60
CLPTM1ENSG00000104853.112042.553701509.578700.436109.760208.79060HepG2PUM1
CLPTM1ENSG00000104853.112224.252901508.480300.560103.801503.02010HepG2PUM2
CLPTM1ENSG00000104853.112330.023001650.135500.4977011.6333010.51990HepG2PUS1
CLPTM1ENSG00000104853.112217.581202620.36180-0.240802.316001.52300HepG2RBM15
CLPTM1ENSG00000104853.112242.534101001.152101.163403.961001.73880HepG2RBM17
CLPTM1ENSG00000104853.113351.600202187.253500.615609.465408.32460HepG2RPLP0
CLPTM1ENSG00000104853.111518.819001001.997300.600003.081102.08550HepG2RPS10
CLPTM1ENSG00000104853.111919.63120945.052001.0223022.2544020.77450HepG2RPS19
CLPTM1ENSG00000104853.111435.061601043.884200.459103.742502.81610HepG2RPS2
CLPTM1ENSG00000104853.111318.15170888.176000.569503.959603.00240HepG2RPS3A
CLPTM1ENSG00000104853.111404.38670985.640400.510709.577408.49110HepG2SAFB2
CLPTM1ENSG00000104853.111480.17210948.325900.642206.873705.40610HepG2SERBP1
CLPTM1ENSG00000104853.111844.07120967.615700.930302.833001.46080HepG2SF1
CLPTM1ENSG00000104853.115030.729702571.839900.9679011.4782010.03970HepG2SF3A3
CLPTM1ENSG00000104853.112753.424202234.130200.301402.494601.82250HepG2SF3B1
CLPTM1ENSG00000104853.111899.651601436.485400.403102.974302.36510HepG2SF3B4
CLPTM1ENSG00000104853.111873.00760938.554600.996702.921801.42140HepG2SFPQ
CLPTM1ENSG00000104853.111649.164001363.525300.274303.710202.91780HepG2SLBP
CLPTM1ENSG00000104853.111609.214101149.400200.4854010.488709.36700HepG2SMN1
CLPTM1ENSG00000104853.112122.27500864.275901.295905.502003.47810HepG2SNRNP200
CLPTM1ENSG00000104853.112149.903701404.074500.6146014.6640013.38550HepG2SRSF5
CLPTM1ENSG00000104853.112402.268601994.943500.267903.888003.08330HepG2SRSF7
CLPTM1ENSG00000104853.112156.000601687.194400.353605.831605.13980HepG2SSB
CLPTM1ENSG00000104853.111058.01510772.719200.453202.753101.65500HepG2STIP1
CLPTM1ENSG00000104853.112159.334201596.826600.435309.179908.15860HepG2SUCLG1
CLPTM1ENSG00000104853.112322.407601597.785100.539407.256705.78610HepG2SUPT6H
CLPTM1ENSG00000104853.11859.593901347.76910-0.6488010.805209.81260HepG2TAF15
CLPTM1ENSG00000104853.112997.044202200.049100.445904.877603.95300HepG2TARDBP
CLPTM1ENSG00000104853.11985.987801238.36160-0.328802.875102.02420HepG2TIA1
CLPTM1ENSG00000104853.111793.478701075.375600.7378012.1635011.24460HepG2TIAL1
CLPTM1ENSG00000104853.111886.599701085.082200.7979022.8240021.40670HepG2TRIM56
CLPTM1ENSG00000104853.112063.985401389.286800.571004.686503.51590HepG2TUFM
CLPTM1ENSG00000104853.113470.915302024.460000.7777012.2343010.88220HepG2U2AF1
CLPTM1ENSG00000104853.114241.567001006.000802.0759011.698809.56180HepG2U2AF2
CLPTM1ENSG00000104853.112105.446201470.530800.517704.147603.11220HepG2UBE2L3
CLPTM1ENSG00000104853.11862.11900665.075000.374301.940201.30490HepG2UCHL5
CLPTM1ENSG00000104853.113113.324002280.832000.4488010.813309.59850HepG2UPF1
CLPTM1ENSG00000104853.112915.810802344.352700.314604.703203.37480HepG2UTP18
CLPTM1ENSG00000104853.112933.897702202.048800.413902.801502.20110HepG2UTP3
CLPTM1ENSG00000104853.111173.34360795.558300.560503.789102.50230HepG2XPO5
CLPTM1ENSG00000104853.112070.357001701.521100.283004.432503.61360HepG2ZC3H8
CLPTM1ENSG00000104853.113680.852902508.474100.5531017.2733016.19810HepG2ZNF622
CLPTM1ENSG00000104853.111999.655701338.311300.5792012.6748011.55560K562AGGF1
CLPTM1ENSG00000104853.111870.672601470.596900.347103.112902.05580K562AKAP8
CLPTM1ENSG00000104853.111870.737901392.572300.425804.358003.53150K562AKAP8L
CLPTM1ENSG00000104853.112800.421002118.066900.402804.348302.73650K562APOBEC3C
CLPTM1ENSG00000104853.112758.612201747.860200.658309.614408.62480K562AQR
CLPTM1ENSG00000104853.112370.784302951.36300-0.316003.560302.45120K562CELF1
CLPTM1ENSG00000104853.11973.65870737.887800.399903.484302.29970K562DDX3X
CLPTM1ENSG00000104853.111520.889601019.447300.577005.785804.43700K562EFTUD2
CLPTM1ENSG00000104853.11721.62660475.465200.601806.626105.40890K562EIF3G
CLPTM1ENSG00000104853.111002.05550770.889900.378302.419001.65080K562EIF4A3
CLPTM1ENSG00000104853.11898.63790694.208400.372303.441402.12920K562EIF4B
CLPTM1ENSG00000104853.11871.36550672.895200.372803.348501.89930K562EWSR1
CLPTM1ENSG00000104853.111684.97540801.689501.0715030.8163028.93420K562FXR1
CLPTM1ENSG00000104853.11108.55140339.34260-1.6444014.6882012.76270K562G3BP2
CLPTM1ENSG00000104853.112031.777701567.625200.374102.653001.74330K562HNRNPM
CLPTM1ENSG00000104853.111961.168102584.16850-0.398003.751802.83010K562HSPD1
CLPTM1ENSG00000104853.11963.30920589.762300.707803.394302.21260K562IGF2BP2
CLPTM1ENSG00000104853.111111.101001448.88150-0.382902.174001.35790K562KRR1
CLPTM1ENSG00000104853.11943.95080619.287500.608005.718604.49600K562MAGOH
CLPTM1ENSG00000104853.111767.188401414.683300.320902.525901.51320K562MAK16
CLPTM1ENSG00000104853.111028.98340617.950600.735606.674405.15700K562MATR3
CLPTM1ENSG00000104853.112069.968401655.588800.322203.143002.16330K562MBNL1
CLPTM1ENSG00000104853.111895.385402330.54390-0.298203.324902.51380K562NSUN2
CLPTM1ENSG00000104853.111415.73350822.520100.783303.475702.32960K562PABPN1
CLPTM1ENSG00000104853.111407.45460992.046900.504504.431503.48320K562PRPF8
CLPTM1ENSG00000104853.111114.36550601.716200.889007.193006.15990K562PTBP1
CLPTM1ENSG00000104853.113759.037302619.010700.521207.419406.07990K562PUF60
CLPTM1ENSG00000104853.111732.211101381.058300.326702.682602.14530K562PUS1
CLPTM1ENSG00000104853.11524.69450379.549400.467103.544101.48780K562QKI
CLPTM1ENSG00000104853.111835.716301345.626100.448004.554903.81340K562RBM15
CLPTM1ENSG00000104853.11773.47480576.684700.423502.368601.59610K562RBM22
CLPTM1ENSG00000104853.111309.062401022.188500.356803.350202.25970K562RCC2
CLPTM1ENSG00000104853.112347.703501600.209800.552907.788806.01370K562SAFB
CLPTM1ENSG00000104853.111465.46050751.988400.962504.486802.84030K562SF1
CLPTM1ENSG00000104853.11712.16360352.681701.0137015.7810013.60900K562SF3B4
CLPTM1ENSG00000104853.111734.03820916.426100.919904.568502.72390K562SFPQ
CLPTM1ENSG00000104853.11299.95530436.59500-0.541503.548601.70320K562SND1
CLPTM1ENSG00000104853.111696.77780863.966000.973704.895103.11320K562SNRNP200
CLPTM1ENSG00000104853.111236.18030589.941901.0671015.9697014.27340K562SRSF1
CLPTM1ENSG00000104853.111072.15750707.115500.600406.595304.84880K562SRSF4
CLPTM1ENSG00000104853.11744.56790557.302800.417802.228401.30670K562SRSF5
CLPTM1ENSG00000104853.111900.552002500.83570-0.396003.808302.19170K562SSRP1
CLPTM1ENSG00000104853.112353.256801801.255300.385604.721203.64290K562SYNCRIP
CLPTM1ENSG00000104853.111194.94810596.931601.001209.385207.96890K562TARDBP
CLPTM1ENSG00000104853.11918.15600575.841600.673006.883605.50250K562TIA1
CLPTM1ENSG00000104853.11767.70980565.375100.441302.610401.55350K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLPTM1 is not available on ENCORE database.





6 RBPs can affect the splicing of CLPTM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLPTM1ENSG00000104853.11chr19+454944954549463145494107454942034549549045495658-0.073000.000280.01380excludedK562PRPF8
SECLPTM1ENSG00000104853.11chr19+454944954549463145494107454942034549549045495658-0.069000.000010.00023excludedHepG2U2AF1
SECLPTM1ENSG00000104853.11chr19+4548830745488354454805994548071745488475454885610.063000.000000.00000includedK562AQR
SECLPTM1ENSG00000104853.11chr19+454944744549463145494107454942034549549045495658-0.060000.006210.05559excludedK562AQR
SECLPTM1ENSG00000104853.11chr19+454944954549463145494107454942034549549045495658-0.063000.000400.02211excludedHepG2SF3B4
SECLPTM1ENSG00000104853.11chr19+454944954549463145494107454942034549549045495658-0.215000.000000.00000excludedK562SF3B1
SECLPTM1ENSG00000104853.11chr19+454944954549463145494107454942034549549045495658-0.123000.000000.00003excludedK562HNRNPC
A3SSCLPTM1ENSG00000104853.11chr19+4548968845489833454897124548983345488475454885610.084000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLPTM1 is not avaliable on ENCORE database.