ATL2

General Information

Gene Name : ATL2
Gene ID : ENSG00000119787.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATL2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATL2	ENSG00000119787.13	33.82	29.47	31.64	ENCSR000AEF
HepG2	ATL2	ENSG00000119787.13	58.87	81.86	70.36	ENCSR985KAT
K562	ATL2	ENSG00000119787.13	41.03	40.72	40.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATL2 is not avaliable on ENCORE database.

Proteins bound to RNA

ATL2 RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for ATL2 is not avaliable on ENCORE database.

40 proteins are bound to ATL2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	38533673	38533740	-	intron-Distal	6.25543	40.04969	K562	EXOSC5
chr2	38545634	38545705	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.04416	36.86761	HepG2	PRPF8
chr2	38522449	38522518	-	3'-UTR,intron-Distal	5.27931	29.16916	K562	PUM2
chr2	38525405	38525493	-	3'-UTR,CDS,intron-Distal	4.28109	28.97054	K562	PUM2
chr2	38536477	38536559	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.41196	25.56347	HepG2	PRPF8
chr2	38531210	38531309	-	intron-Distal	6.56302	24.03439	K562	EXOSC5
chr2	38528462	38528538	-	intron-Distal	5.02418	22.85760	K562	EXOSC5
chr2	38533485	38533569	-	intron-Distal	5.63728	22.70765	K562	EXOSC5
chr2	38536453	38536503	-	intron-Distal,intron-Proximal	5.61058	21.60795	K562	PRPF8
chr2	38529911	38530005	-	intron-Distal	6.36825	21.00970	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 216 entries

eCLIP assay for ATL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATL2 is not available on ENCORE database.
97 RBPs can affect the levels of ATL2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATL2 is not available on ENCORE database.

97 RBPs can affect the gene expression of ATL2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATL2	ENSG00000119787.9	678.69070	2013.78920	-1.56910	56.25180	54.54000	HepG2	TIAL1
ATL2	ENSG00000119787.9	978.07530	2072.47820	-1.08330	41.72950	39.60010	HepG2	HNRNPU
ATL2	ENSG00000119787.9	983.35030	2031.80240	-1.04700	38.64900	36.84700	HepG2	TRIM56
ATL2	ENSG00000119787.9	1905.07020	3299.00120	-0.79220	26.26960	24.67330	HepG2	SUCLG1
ATL2	ENSG00000119787.9	1899.29950	3116.13360	-0.71430	22.26970	21.02140	HepG2	NELFE
ATL2	ENSG00000119787.9	1264.37990	2058.86970	-0.70340	22.41420	20.92740	HepG2	CKAP4
ATL2	ENSG00000119787.9	1295.77140	2028.95570	-0.64690	20.10090	18.96090	HepG2	ZNF622
ATL2	ENSG00000119787.9	2229.92370	3398.06340	-0.60770	19.09320	18.08640	HepG2	SRFBP1
ATL2	ENSG00000119787.9	1404.28020	2152.31580	-0.61610	19.33030	17.86550	HepG2	SMN1
ATL2	ENSG00000119787.9	2022.33420	3118.66130	-0.62490	18.66860	17.40620	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 110 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATL2 is not available on ENCORE database.

9 RBPs can affect the splicing of ATL2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATL2	ENSG00000119787.9	chr2	-	38527413	38527470			38526397	38526469	38536520	38536648	-0.12700	0.00000	0.00001	excluded	K562	AQR
SE	ATL2	ENSG00000119787.9	chr2	-	38523498	38523732			38522955	38523255	38525285	38525717	0.05100	0.00000	0.00034	included	HepG2	SF3A3
SE	ATL2	ENSG00000119787.9	chr2	-	38570409	38570654			38546078	38546161	38604284	38604398	-0.18800	0.00005	0.00715	excluded	K562	SUPV3L1
MXE	ATL2	ENSG00000119787.9	chr2	-	38570409	38570654	38581208	38581319	38546026	38546161	38604284	38604404	0.07100	0.00007	0.00502	1included	HepG2	HNRNPC
SE	ATL2	ENSG00000119787.9	chr2	-	38523498	38523732			38522955	38523255	38525285	38525717	0.07800	0.00030	0.00785	included	K562	SRSF1
SE	ATL2	ENSG00000119787.9	chr2	-	38581208	38581319			38570409	38570654	38604284	38604421	0.21100	0.00032	0.01589	included	HepG2	HNRNPC
SE	ATL2	ENSG00000119787.9	chr2	-	38570409	38570654			38546078	38546161	38604284	38604398	-0.08300	0.00036	0.04471	excluded	HepG2	LARP4
SE	ATL2	ENSG00000119787.9	chr2	-	38544380	38544491			38542425	38542476	38545676	38545781	0.09800	0.00061	0.04108	included	HepG2	RBM22
SE	ATL2	ENSG00000119787.9	chr2	-	38570409	38570654			38546078	38546161	38604284	38604415	0.07000	0.00088	0.08573	included	HepG2	RBFOX2
SE	ATL2	ENSG00000119787.9	chr2	-	38581208	38581319			38570409	38570654	38604284	38604421	0.05700	0.00284	0.09112	included	HepG2	MATR3

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATL2

General Information

Functions

Localization

Domains (AlphaFold: ATL2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATL2 is not avaliable on ENCORE database.

40 proteins are bound to ATL2 RNA:

eCLIP assay for ATL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATL2 is not available on ENCORE database.

97 RBPs can affect the gene expression of ATL2 :

The Knockdown/knockout RNA-Seq assay for ATL2 is not available on ENCORE database.

9 RBPs can affect the splicing of ATL2 :

The Knockdown/knockout RNA-Seq assay for ATL2 is not avaliable on ENCORE database.