APOBEC3B

General Information

Gene Name       : APOBEC3B
Gene ID             : ENSG00000179750.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APOBEC3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APOBEC3BENSG00000179750.1515.6621.4418.55ENCSR000AEF
HepG2APOBEC3BENSG00000179750.1513.9118.2616.09ENCSR985KAT
K562APOBEC3BENSG00000179750.1541.8542.3242.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APOBEC3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • APOBEC3B RNA is bound by 3 proteins.  







eCLIP assay for APOBEC3B is not avaliable on ENCORE database.





3 proteins are bound to APOBEC3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223938864139388736+3'-UTR4.057474.55651HepG2SUB1
chr223938206139382074+CDS4.149503.46958K562YBX3
chr223938198239382012+CDS3.326364.30677K562YBX3
chr223938204139382049+CDS4.6490014.26329K562YBX3
chr223938202439382041+CDS4.7666916.11159K562YBX3
chr223938201239382024+CDS4.5614613.27358K562YBX3
chr223938474539384806+intron-Distal4.978053.91475K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APOBEC3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APOBEC3B is not available on ENCORE database.

  • 122 RBPs can affect the levels of APOBEC3B.  








The Knockdown/knockout RNA-Seq assay for APOBEC3B is not available on ENCORE database.





122 RBPs can affect the gene expression of APOBEC3B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APOBEC3BENSG00000179750.11134.29860227.77550-0.762203.934302.76900HepG2ADAR
APOBEC3BENSG00000179750.1134.83260130.76850-1.908509.443908.05170HepG2ASCC1
APOBEC3BENSG00000179750.11118.25650290.88950-1.2986012.6361011.35650HepG2AUH
APOBEC3BENSG00000179750.1157.50650178.08420-1.630809.048607.54810HepG2BCLAF1
APOBEC3BENSG00000179750.1113.96880284.99000-4.3506050.4098048.48310HepG2BOP1
APOBEC3BENSG00000179750.11106.60290296.07510-1.4737013.8389012.34150HepG2CALR
APOBEC3BENSG00000179750.1171.31060217.15290-1.6065015.0652013.77200HepG2CKAP4
APOBEC3BENSG00000179750.11152.98690261.64240-0.774204.017503.20300HepG2CPSF6
APOBEC3BENSG00000179750.11168.33470253.04140-0.588002.819001.70370HepG2CPSF7
APOBEC3BENSG00000179750.11194.70060395.62530-1.0229010.988909.87500HepG2CELF1
APOBEC3BENSG00000179750.11282.93300425.37010-0.588305.413404.42300HepG2DAZAP1
APOBEC3BENSG00000179750.1188.91100191.92270-1.110103.235602.24590HepG2DDX24
APOBEC3BENSG00000179750.1159.32950152.65590-1.363505.990004.04230HepG2DDX28
APOBEC3BENSG00000179750.1139.43790151.40130-1.9407010.864009.70000HepG2DDX3X
APOBEC3BENSG00000179750.11133.06880297.11220-1.158806.019404.60100HepG2DDX59
APOBEC3BENSG00000179750.11147.92030234.15900-0.662703.234602.14940HepG2DDX5
APOBEC3BENSG00000179750.1157.91970130.02250-1.166604.250303.49760HepG2DDX6
APOBEC3BENSG00000179750.11114.81980207.79610-0.855804.943104.08640HepG2DKC1
APOBEC3BENSG00000179750.11147.61950227.33010-0.622903.761603.02290HepG2DNAJC2
APOBEC3BENSG00000179750.1179.98730180.63140-1.175203.018801.85470HepG2AGO1
APOBEC3BENSG00000179750.1125.58170125.02790-2.2891011.1540010.01160HepG2EIF2S1
APOBEC3BENSG00000179750.1197.95010190.51840-0.959804.342603.23010HepG2EIF3D
APOBEC3BENSG00000179750.1152.45690138.18710-1.397406.354605.38820HepG2EIF4A3
APOBEC3BENSG00000179750.11203.26770419.67460-1.0459012.0760010.57240HepG2EIF4G1
APOBEC3BENSG00000179750.11169.53210402.01760-1.2457012.2887010.64930HepG2EIF4G2
APOBEC3BENSG00000179750.11180.56690266.18050-0.559902.645301.57630HepG2ESF1
APOBEC3BENSG00000179750.1187.90470333.97500-1.9257025.8546024.33340HepG2ETF1
APOBEC3BENSG00000179750.11144.41860212.24260-0.555502.450701.66360HepG2EWSR1
APOBEC3BENSG00000179750.11105.54410262.07840-1.312204.928303.57700HepG2FTO
APOBEC3BENSG00000179750.11240.49540139.375000.786903.920403.10640HepG2FXR1
APOBEC3BENSG00000179750.11199.49560296.60850-0.572202.477101.86780HepG2GPKOW
APOBEC3BENSG00000179750.11128.41540207.36120-0.691304.053102.88470HepG2HDGF
APOBEC3BENSG00000179750.11200.50110390.93900-0.963309.825908.26200HepG2HNRNPA2B1
APOBEC3BENSG00000179750.11138.86600260.26480-0.906306.750705.69640HepG2HNRNPF
APOBEC3BENSG00000179750.11292.01010387.47220-0.408102.640301.98170HepG2HNRNPL
APOBEC3BENSG00000179750.1177.21560283.05750-1.8741016.2826014.93100HepG2HNRNPLL
APOBEC3BENSG00000179750.1136.16510131.45730-1.861909.265908.11190HepG2IGF2BP2
APOBEC3BENSG00000179750.11188.20670261.35470-0.473702.728802.00070HepG2ILF2
APOBEC3BENSG00000179750.11100.6833050.505700.995203.126901.84200HepG2KHDRBS1
APOBEC3BENSG00000179750.11173.98800415.77010-1.2568010.457008.84200HepG2LARP4
APOBEC3BENSG00000179750.11140.10670278.83160-0.992906.621704.79310HepG2LIN28B
APOBEC3BENSG00000179750.11227.03790140.211900.695202.845102.20590HepG2MATR3
APOBEC3BENSG00000179750.11141.43750240.10540-0.763504.156002.40550HepG2NIP7
APOBEC3BENSG00000179750.11163.09740250.97260-0.621802.697301.95740HepG2NSUN2
APOBEC3BENSG00000179750.1170.51440127.84540-0.858402.954602.21090HepG2PABPC4
APOBEC3BENSG00000179750.1163.44480140.68270-1.148905.483404.67510HepG2PCBP1
APOBEC3BENSG00000179750.1155.88440225.08320-2.0099015.1133012.98550HepG2PCBP2
APOBEC3BENSG00000179750.11166.45410252.26490-0.599803.447702.59370HepG2PRPF4
APOBEC3BENSG00000179750.1163.50410155.45610-1.291605.768504.64940HepG2PRPF8
APOBEC3BENSG00000179750.11149.97220402.64920-1.4248016.0233014.74920HepG2PUF60
APOBEC3BENSG00000179750.11225.50760427.43780-0.9225011.0833010.06330HepG2PUM1
APOBEC3BENSG00000179750.11101.13940155.05420-0.616402.334101.75150HepG2QKI
APOBEC3BENSG00000179750.11113.23690217.19720-0.939703.479902.69090HepG2RAVER1
APOBEC3BENSG00000179750.1157.51750140.70680-1.290606.434805.44630HepG2RBM25
APOBEC3BENSG00000179750.11206.48440320.19780-0.632903.173902.10720HepG2RBM27
APOBEC3BENSG00000179750.11226.62460159.306900.508401.964101.49100HepG2NELFE
APOBEC3BENSG00000179750.11212.68130148.345000.519602.080901.53630HepG2RECQL
APOBEC3BENSG00000179750.1192.44270280.35230-1.6006014.4301013.10080HepG2RPLP0
APOBEC3BENSG00000179750.1145.93370213.37810-2.2158015.9002013.85610HepG2RPS10
APOBEC3BENSG00000179750.1193.06420185.41430-0.994505.315604.49550HepG2RPS19
APOBEC3BENSG00000179750.11106.29520295.31070-1.4742012.4972010.89160HepG2RPS2
APOBEC3BENSG00000179750.1138.19620153.78000-2.0094010.677809.28730HepG2RRP9
APOBEC3BENSG00000179750.1187.60510199.45900-1.187005.996004.97910HepG2SF3A3
APOBEC3BENSG00000179750.1172.79850280.18050-1.9444018.0244016.39130HepG2SF3B1
APOBEC3BENSG00000179750.1177.47680149.05140-0.944004.331303.61620HepG2SF3B4
APOBEC3BENSG00000179750.11189.85590386.09400-1.0240011.4795010.21260HepG2SLBP
APOBEC3BENSG00000179750.11143.92800221.53010-0.622202.525401.61280HepG2SMNDC1
APOBEC3BENSG00000179750.1183.11900311.74650-1.9071014.0189012.27820HepG2SNRNP70
APOBEC3BENSG00000179750.1154.71370315.28290-2.5267035.8422034.57410HepG2SRFBP1
APOBEC3BENSG00000179750.11327.35530155.563901.073309.092708.34620HepG2SRSF1
APOBEC3BENSG00000179750.11181.21190397.56690-1.1335013.1722011.94240HepG2SRSF5
APOBEC3BENSG00000179750.1192.14710255.69770-1.4724014.0588012.69930HepG2SRSF7
APOBEC3BENSG00000179750.1145.97100126.54790-1.460907.660206.82590HepG2SRSF9
APOBEC3BENSG00000179750.11194.35320273.74350-0.494102.750002.23820HepG2SSB
APOBEC3BENSG00000179750.1185.66200207.23320-1.274507.153405.28330HepG2STAU1
APOBEC3BENSG00000179750.11349.55180452.13500-0.371202.451401.85870HepG2SUCLG1
APOBEC3BENSG00000179750.1192.25500209.50400-1.183307.639706.13230HepG2SUPT6H
APOBEC3BENSG00000179750.1172.59220275.84970-1.9260017.7233016.16580HepG2TARDBP
APOBEC3BENSG00000179750.1135.66030134.45290-1.914709.500707.87550HepG2TFIP11
APOBEC3BENSG00000179750.11123.19060248.62530-1.013107.236906.49740HepG2TIAL1
APOBEC3BENSG00000179750.11176.55500250.83950-0.506602.822302.25400HepG2TRIM56
APOBEC3BENSG00000179750.11188.42210393.38410-1.062009.858208.01360HepG2TUFM
APOBEC3BENSG00000179750.1195.04560265.42020-1.4816010.987509.71350HepG2U2AF1
APOBEC3BENSG00000179750.11104.03690287.48800-1.466404.378003.12610HepG2U2AF2
APOBEC3BENSG00000179750.11215.62450416.39930-0.949406.096504.82460HepG2UBE2L3
APOBEC3BENSG00000179750.1158.92210118.49940-1.008003.723002.84320HepG2UCHL5
APOBEC3BENSG00000179750.1175.29330176.88990-1.232307.855906.77670HepG2UPF1
APOBEC3BENSG00000179750.1184.24870181.81590-1.109806.656805.10460HepG2UTP18
APOBEC3BENSG00000179750.11102.51290170.77980-0.736303.051502.42780HepG2UTP3
APOBEC3BENSG00000179750.1143.65830194.54460-2.1558020.7603019.60500HepG2ZNF622
APOBEC3BENSG00000179750.11103.06010217.02220-1.074405.856603.88700HepG2ZRANB2
APOBEC3BENSG00000179750.111462.672601074.322000.445104.023602.52350K562ABCF1
APOBEC3BENSG00000179750.111525.678001105.526400.464604.725603.86480K562AKAP8L
APOBEC3BENSG00000179750.11562.273701012.03830-0.8479010.264709.24480K562AQR
APOBEC3BENSG00000179750.111437.632401159.951700.309503.141002.16440K562ATP5C1
APOBEC3BENSG00000179750.11901.71320744.058300.277202.414601.51940K562BCLAF1
APOBEC3BENSG00000179750.111503.555901231.589200.287803.020801.86160K562CPEB4
APOBEC3BENSG00000179750.111143.72060900.683700.344502.760401.97930K562CPSF6
APOBEC3BENSG00000179750.11393.41980564.47890-0.520903.886402.60660K562CSTF2
APOBEC3BENSG00000179750.11559.334301274.52970-1.1882034.4264032.39480K562DDX47
APOBEC3BENSG00000179750.111144.24260758.534400.593005.745804.76550K562EIF2S2
APOBEC3BENSG00000179750.11261.37090540.78070-1.048906.548104.94680K562EIF3A
APOBEC3BENSG00000179750.11496.10660689.51300-0.474902.870001.81600K562EIF3D
APOBEC3BENSG00000179750.11393.94850516.43460-0.390602.896402.08250K562EIF3G
APOBEC3BENSG00000179750.11460.80560732.76420-0.669204.709403.63930K562EIF4A3
APOBEC3BENSG00000179750.111003.30540659.856700.604408.300906.16340K562EIF4B
APOBEC3BENSG00000179750.111014.756201559.65510-0.6201010.819909.01510K562EIF4G2
APOBEC3BENSG00000179750.11959.56150639.603900.585106.980904.71010K562EWSR1
APOBEC3BENSG00000179750.111181.74190772.314700.613606.841705.45940K562FIP1L1
APOBEC3BENSG00000179750.111123.93930719.528500.643306.185504.38050K562FKBP4
APOBEC3BENSG00000179750.11631.43520456.543200.467803.577102.02700K562FUS
APOBEC3BENSG00000179750.11471.20480762.03720-0.693509.374708.33810K562FXR1
APOBEC3BENSG00000179750.11928.61810740.102300.327302.355801.31630K562HNRNPF
APOBEC3BENSG00000179750.11743.903201073.37370-0.529006.807505.40220K562HNRNPU
APOBEC3BENSG00000179750.111113.91620837.814400.410802.540901.57070K562IGF2BP2
APOBEC3BENSG00000179750.11538.28540734.26840-0.447902.372901.51750K562KRR1
APOBEC3BENSG00000179750.11542.45700880.43690-0.698708.447406.94020K562MAGOH
APOBEC3BENSG00000179750.111230.45560921.259600.417402.388101.58180K562NAA15
APOBEC3BENSG00000179750.112167.320501706.025900.345202.898501.37220K562NOL12
APOBEC3BENSG00000179750.111367.392301082.500700.337005.020404.05620K562NSUN2
APOBEC3BENSG00000179750.11961.01060675.719100.508003.633401.41720K562PA2G4
APOBEC3BENSG00000179750.11664.42490860.65900-0.373303.057901.63450K562PCBP1
APOBEC3BENSG00000179750.11458.73500783.35750-0.772008.536506.78290K562PCBP2
APOBEC3BENSG00000179750.11908.891601153.17910-0.343403.185402.32230K562POLR2G
APOBEC3BENSG00000179750.111172.52150876.773500.419203.438002.50780K562PPIG
APOBEC3BENSG00000179750.11456.44730626.75270-0.457402.916602.14780K562PRPF8
APOBEC3BENSG00000179750.111175.194701701.69250-0.534106.378105.14050K562PUF60
APOBEC3BENSG00000179750.111377.244501068.262500.366403.926803.23750K562RBM15
APOBEC3BENSG00000179750.11574.80610746.19580-0.376502.763901.43460K562RBM25
APOBEC3BENSG00000179750.11861.03620677.971300.344702.602301.64430K562RCC2
APOBEC3BENSG00000179750.11274.02500638.35520-1.2201013.3218011.50590K562RPS19
APOBEC3BENSG00000179750.11561.33540917.54300-0.708905.203003.76790K562RPS3
APOBEC3BENSG00000179750.11806.417401027.60580-0.349702.675601.61350K562SAFB
APOBEC3BENSG00000179750.11811.029901062.38270-0.389502.941201.44600K562SDAD1
APOBEC3BENSG00000179750.11820.431901068.13880-0.380604.026403.05100K562SF3A3
APOBEC3BENSG00000179750.11526.66020818.01440-0.635307.700106.23220K562SF3B4
APOBEC3BENSG00000179750.11771.998201094.33000-0.503407.823206.34070K562SRPK2
APOBEC3BENSG00000179750.11711.051201156.71070-0.702009.985408.41790K562SYNCRIP
APOBEC3BENSG00000179750.11635.16440848.69040-0.418103.011502.27310K562TARDBP
APOBEC3BENSG00000179750.11956.76440714.728400.420702.871601.91870K562TIAL1
APOBEC3BENSG00000179750.11989.36180759.304300.381702.780701.83160K562TRIM56
APOBEC3BENSG00000179750.111464.512501209.082800.276402.802301.52340K562TROVE2
APOBEC3BENSG00000179750.11560.54770787.52740-0.490504.747103.69900K562U2AF2
APOBEC3BENSG00000179750.112572.825501918.672600.423104.873503.01790K562UBE2L3
APOBEC3BENSG00000179750.11545.039101021.29900-0.9060021.2106019.21090K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APOBEC3B is not available on ENCORE database.






No RBPs affect the alternative splcing events of APOBEC3B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for APOBEC3B is not avaliable on ENCORE database.