AC005562.1

General Information

Gene Name       : AC005562.1
Gene ID             : ENSG00000273609.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AC005562.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AC005562.1ENSG00000273609.10.000.000.00ENCSR000AEF
HepG2AC005562.1ENSG00000273609.10.000.000.00ENCSR985KAT
K562AC005562.1ENSG00000273609.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AC005562.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AC005562.1 RNA is bound by 16 proteins.  







eCLIP assay for AC005562.1 is not avaliable on ENCORE database.





16 proteins are bound to AC005562.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172892742928927514+intron-Distal5.190626.39257HepG2NCBP2
chr172893053228930634+intron-Distal4.356223.66710HepG2GTF2F1
chr172895218928952328+intron-Distal4.8075311.70284HepG2DDX59
chr172892793228928063+intron-Distal,intron-Proximal3.231786.78376HepG2EFTUD2
chr172893211828932223+intron-Distal3.177304.97747HepG2MATR3
chr172895865128958724+intron-Distal,intron-Proximal3.484419.21257HepG2DDX59
chr172895125828951332+intron-Distal3.387113.73778HepG2EIF3D
chr172895154128951644+intron-Distal3.562385.11891HepG2GRWD1
chr172896013928960225+intron-Distal3.756603.68471HepG2BCLAF1
chr172895859528958636+intron-Distal3.531773.27534HepG2DDX59
chr172895153928951591+intron-Distal3.027793.73587HepG2DDX59
chr172894224528942327+intron-Distal3.341893.21744HepG2HNRNPC
chr172894290028942989+intron-Distal,intron-Proximal4.094767.05070HepG2DDX59
chr172893212028932224+intron-Distal4.464555.04769HepG2PTBP1
chr172892783628927946+intron-Distal,intron-Proximal3.798217.12467HepG2DDX3X
chr172894923228949273+intron-Distal4.584463.92947HepG2DDX59
chr172892753228927580+intron-Distal3.834985.65659HepG2DDX3X
chr172895148228951539+intron-Distal3.970645.04426HepG2DDX59
chr172895236728952412+intron-Distal4.305995.18268HepG2DDX59
chr172893050628930615+intron-Distal3.8083571.01629HepG2HNRNPL
chr172892756428927734+intron-Distal3.055894.35077HepG2NCBP2
chr172896013728960272+intron-Distal4.886095.85497HepG2GRWD1
chr172895079328950880+intron-Distal3.2987410.57815HepG2DDX59
chr172892773228927797+intron-Distal4.131583.80193HepG2GRWD1
chr172892758028927658+intron-Distal3.666478.94209HepG2DDX3X
chr172893083128930900+intron-Distal4.103143.50357HepG2QKI
chr172895139028951448+intron-Distal4.589165.65933HepG2DDX59
chr172893063828930715+intron-Distal3.159105.66406HepG2AGGF1
chr172894224628942303+intron-Distal3.049446.46038HepG2DDX59
chr172892751428927564+intron-Distal3.590004.77154HepG2NCBP2
chr172893061528930682+intron-Distal4.8233530.00279HepG2HNRNPL
chr172895250728952575+intron-Distal5.225355.41835HepG2DDX59
chr172892747628927551+intron-Distal3.094193.23164HepG2PRPF4
chr172893790328937975+intron-Proximal3.9889116.85893HepG2BCLAF1
chr172893467128934685+intron-Distal,intron-Proximal4.220396.22576HepG2BCLAF1
chr172893454528934671+intron-Distal,intron-Proximal4.176897.49899HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AC005562.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AC005562.1 is not available on ENCORE database.

  • 102 RBPs can affect the levels of AC005562.1.  








The Knockdown/knockout RNA-Seq assay for AC005562.1 is not available on ENCORE database.





102 RBPs can affect the gene expression of AC005562.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AC005562.1ENSG00000214719.7152.52660249.02960-0.707302.933001.83450HepG2AATF
AC005562.1ENSG00000214719.7155.06930356.53290-1.2011014.8532013.68220HepG2ACO1
AC005562.1ENSG00000214719.7113.70940519.64290-2.192209.593508.66760HepG2AKAP1
AC005562.1ENSG00000214719.7410.69640685.20260-0.738506.150504.62830HepG2AKAP8
AC005562.1ENSG00000214719.7144.73160272.73650-0.914103.308201.47880HepG2APOBEC3C
AC005562.1ENSG00000214719.7750.48850555.251300.434602.916801.47470HepG2ATP5C1
AC005562.1ENSG00000214719.7438.09760266.007100.719707.364906.33310HepG2AUH
AC005562.1ENSG00000214719.775.04440138.73690-0.886503.255902.24080HepG2BCCIP
AC005562.1ENSG00000214719.7245.08720120.529801.023805.060003.87730HepG2BCLAF1
AC005562.1ENSG00000214719.7319.13140461.03280-0.530703.646002.24190HepG2BUD13
AC005562.1ENSG00000214719.7117.55550356.48040-1.6005023.3790021.87000HepG2CKAP4
AC005562.1ENSG00000214719.7140.23660292.02750-1.058205.640204.54470HepG2CNOT7
AC005562.1ENSG00000214719.7496.98400365.738000.442302.506401.84640HepG2CPSF6
AC005562.1ENSG00000214719.726.9313085.66570-1.669406.164504.66120HepG2CSTF2
AC005562.1ENSG00000214719.7149.95490255.06670-0.766303.500601.90010HepG2CSTF2T
AC005562.1ENSG00000214719.7385.04720236.924500.700506.370605.31210HepG2DAZAP1
AC005562.1ENSG00000214719.7191.23110268.83770-0.491402.232401.42230HepG2DDX24
AC005562.1ENSG00000214719.7177.15990103.301200.778102.790201.39330HepG2DDX28
AC005562.1ENSG00000214719.7130.40930497.85240-1.932708.464007.41970HepG2DDX3X
AC005562.1ENSG00000214719.7847.49760560.077800.597505.443304.07300HepG2DDX5
AC005562.1ENSG00000214719.7260.97070179.895300.536602.586701.63700HepG2DHX30
AC005562.1ENSG00000214719.7268.29280186.525700.524302.857702.14620HepG2DNAJC21
AC005562.1ENSG00000214719.7125.99200232.94610-0.886704.444003.30290HepG2EEF2
AC005562.1ENSG00000214719.7120.96490194.18140-0.682802.915301.77890HepG2EFTUD2
AC005562.1ENSG00000214719.7755.85130411.130700.878403.450202.79170HepG2EIF2S1
AC005562.1ENSG00000214719.7277.37190466.79890-0.751006.337004.63360HepG2EIF2S2
AC005562.1ENSG00000214719.7134.21430442.29320-1.720507.768606.64630HepG2EIF4B
AC005562.1ENSG00000214719.7331.50380233.725800.504102.929802.07280HepG2EIF4G1
AC005562.1ENSG00000214719.7334.32870223.897000.578303.101602.24130HepG2EIF4G2
AC005562.1ENSG00000214719.7173.76920305.38950-0.813502.856802.24760HepG2ETF1
AC005562.1ENSG00000214719.7244.71960348.41850-0.509702.952402.09260HepG2EWSR1
AC005562.1ENSG00000214719.7277.57100621.42890-1.1627010.986809.59900HepG2FIP1L1
AC005562.1ENSG00000214719.7218.80820113.534300.946403.766902.29540HepG2FKBP4
AC005562.1ENSG00000214719.7137.57570458.24950-1.735907.800906.68490HepG2FXR1
AC005562.1ENSG00000214719.7153.07350425.22640-1.474006.173105.19750HepG2G3BP1
AC005562.1ENSG00000214719.7308.00240414.58760-0.428701.952601.40860HepG2GPKOW
AC005562.1ENSG00000214719.7253.81640340.40200-0.423502.648501.68960HepG2HDGF
AC005562.1ENSG00000214719.7131.05160188.31230-0.523001.862501.32060HepG2HNRNPA1
AC005562.1ENSG00000214719.7384.69070173.251701.1507014.5834013.10800HepG2HNRNPF
AC005562.1ENSG00000214719.7122.94780430.27020-1.807208.373107.21110HepG2HNRNPK
AC005562.1ENSG00000214719.7730.79280395.649000.885105.365604.51870HepG2HNRNPLL
AC005562.1ENSG00000214719.7230.35350428.70880-0.896108.449906.93750HepG2HNRNPM
AC005562.1ENSG00000214719.7105.05750208.06650-0.985906.697905.79230HepG2HNRNPU
AC005562.1ENSG00000214719.7334.28390746.26830-1.158606.748404.86490HepG2HSPD1
AC005562.1ENSG00000214719.7472.86340170.605501.470702.638101.93020HepG2IGF2BP1
AC005562.1ENSG00000214719.7244.58120432.28060-0.821702.799202.12090HepG2IGF2BP2
AC005562.1ENSG00000214719.7123.69830405.48640-1.712807.328005.78090HepG2IGF2BP3
AC005562.1ENSG00000214719.7289.14960212.535100.444002.766002.03290HepG2ILF2
AC005562.1ENSG00000214719.7187.06750278.38380-0.573502.555601.42100HepG2KHDRBS1
AC005562.1ENSG00000214719.7170.44030434.71210-1.350805.067103.67290HepG2KHSRP
AC005562.1ENSG00000214719.7106.06610188.07730-0.826404.197402.70040HepG2LIN28B
AC005562.1ENSG00000214719.7139.97700461.01510-1.719607.431606.43590HepG2MATR3
AC005562.1ENSG00000214719.7207.23000502.86380-1.2789016.3028014.52850HepG2MSI2
AC005562.1ENSG00000214719.7739.12060403.521400.873105.211903.85610HepG2MTPAP
AC005562.1ENSG00000214719.788.22940471.90800-2.4192011.6435010.38680HepG2NCBP2
AC005562.1ENSG00000214719.7406.81740707.11680-0.797605.853303.77660HepG2NKRF
AC005562.1ENSG00000214719.7808.14490350.822101.2038016.5681014.91770HepG2NSUN2
AC005562.1ENSG00000214719.7193.08870420.41820-1.122602.909202.17010HepG2PABPC4
AC005562.1ENSG00000214719.7204.75980425.86610-1.0565013.0481011.88410HepG2PCBP1
AC005562.1ENSG00000214719.7148.29480314.33520-1.083806.884705.31150HepG2PCBP2
AC005562.1ENSG00000214719.738.45370105.17510-1.451605.511204.41380HepG2PRPF8
AC005562.1ENSG00000214719.7170.21430433.32510-1.3481018.4251017.24740HepG2PTBP1
AC005562.1ENSG00000214719.7151.74480238.05560-0.649704.103503.41170HepG2PUM1
AC005562.1ENSG00000214719.7382.27340237.885100.684204.990204.10330HepG2PUM2
AC005562.1ENSG00000214719.7265.20920363.15550-0.453503.091702.44830HepG2PUS1
AC005562.1ENSG00000214719.7237.05050469.32220-0.985406.641405.73430HepG2QKI
AC005562.1ENSG00000214719.7144.44830255.25370-0.821405.176304.52220HepG2RBM22
AC005562.1ENSG00000214719.7293.17020425.93240-0.538903.606502.84360HepG2RBM25
AC005562.1ENSG00000214719.7133.59270216.11700-0.694003.242702.16440HepG2RBM27
AC005562.1ENSG00000214719.7140.81850282.08870-1.002305.791103.60150HepG2RBM47
AC005562.1ENSG00000214719.7220.25580482.25720-1.1306014.5427013.48560HepG2NELFE
AC005562.1ENSG00000214719.7274.34120449.14260-0.711206.679905.78220HepG2RECQL
AC005562.1ENSG00000214719.7482.60160297.952900.695603.769802.66820HepG2RPS10
AC005562.1ENSG00000214719.798.80950184.00370-0.897004.386003.63040HepG2RPS19
AC005562.1ENSG00000214719.7116.98000199.29600-0.768702.158501.44640HepG2RPS2
AC005562.1ENSG00000214719.7194.51980293.35770-0.592702.476901.71870HepG2RPS3A
AC005562.1ENSG00000214719.795.71050203.46070-1.088005.537104.00210HepG2RPS5
AC005562.1ENSG00000214719.738.64980104.03390-1.428505.174504.13210HepG2RRP9
AC005562.1ENSG00000214719.7256.60390774.69880-1.5941011.5509010.10960HepG2SF3A3
AC005562.1ENSG00000214719.7255.99020391.61150-0.613303.809302.99250HepG2SF3B1
AC005562.1ENSG00000214719.7143.70220451.16450-1.6506025.4371023.95350HepG2SF3B4
AC005562.1ENSG00000214719.7333.92990215.018300.635004.816703.93150HepG2SLBP
AC005562.1ENSG00000214719.7145.70220216.10280-0.568703.020602.35200HepG2SMN1
AC005562.1ENSG00000214719.7225.70780129.911000.796802.988701.30740HepG2SRP68
AC005562.1ENSG00000214719.798.05150470.91110-2.2638041.2788039.92730HepG2SRSF1
AC005562.1ENSG00000214719.7384.42920170.207001.1753015.0205013.62450HepG2SRSF7
AC005562.1ENSG00000214719.7244.50600383.10520-0.647902.608602.06860HepG2SRSF9
AC005562.1ENSG00000214719.7410.17300743.32020-0.857807.972505.96220HepG2SSRP1
AC005562.1ENSG00000214719.7167.53060255.22930-0.607402.703301.61710HepG2STIP1
AC005562.1ENSG00000214719.7148.77180251.81750-0.759305.020104.22460HepG2SUCLG1
AC005562.1ENSG00000214719.7689.92850419.549800.717507.574206.07290HepG2SUPT6H
AC005562.1ENSG00000214719.7125.40800423.25380-1.7549026.4806024.97630HepG2TAF15
AC005562.1ENSG00000214719.7287.93580385.64840-0.421502.047801.41190HepG2TARDBP
AC005562.1ENSG00000214719.791.32020202.22140-1.146906.616505.90400HepG2TIAL1
AC005562.1ENSG00000214719.7149.81950304.57080-1.023605.745303.66810HepG2TRA2A
AC005562.1ENSG00000214719.768.66340150.25020-1.129805.177803.06050HepG2TROVE2
AC005562.1ENSG00000214719.7273.36270531.54640-0.959409.227008.07120HepG2U2AF1
AC005562.1ENSG00000214719.7199.62730663.31220-1.7324018.6559017.31140HepG2UTP3
AC005562.1ENSG00000214719.7179.50290333.59770-0.894105.303903.86130HepG2XRCC6
AC005562.1ENSG00000214719.7483.87980755.61330-0.643004.631203.97030HepG2ZNF622
AC005562.1ENSG00000214719.723.438803.895202.589002.955602.35210K562AQR
AC005562.1ENSG00000214719.715.923501.982803.005502.814701.53950K562EXOSC5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AC005562.1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of AC005562.1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for AC005562.1 is not avaliable on ENCORE database.