TMEM209

General Information

Gene Name       : TMEM209
Gene ID             : ENSG00000146842.16
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TMEM209)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM209ENSG00000146842.1630.6923.8127.25ENCSR000AEF
HepG2TMEM209ENSG00000146842.168.0112.4310.22ENCSR985KAT
K562TMEM209ENSG00000146842.1652.2959.5255.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM209 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM209 RNA is bound by 21 proteins.  







eCLIP assay for TMEM209 is not avaliable on ENCORE database.





21 proteins are bound to TMEM209 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7129805482129805541-3'-UTR,intron-Distal3.4388114.43902K562FAM120A
chr7129804738129804833-3'-UTR,intron-Distal3.2882019.81012K562UPF1
chr7129805820129805899-3'-UTR,intron-Distal,intron-Proximal3.717764.69646HepG2UPF1
chr7129805310129805363-3'-UTR,intron-Distal3.457597.14815K562FAM120A
chr7129805865129805898-3'-UTR,intron-Distal,intron-Proximal3.4519329.97428K562FAM120A
chr7129805182129805228-3'-UTR,intron-Distal3.108094.45614K562FAM120A
chr7129805401129805427-3'-UTR,intron-Distal3.340716.13685K562UPF1
chr7129805942129805989-3'-UTR,intron-Distal3.339426.89225K562FAM120A
chr7129805841129805865-3'-UTR,intron-Distal,intron-Proximal3.2859730.81756K562FAM120A
chr7129806076129806132-3'-UTR,intron-Distal3.597327.21887K562KHSRP
chr7129805287129805386-3'-UTR,intron-Distal3.2776921.30018K562UPF1
chr7129805499129805545-3'-UTR,intron-Distal3.3146333.86369K562PABPC4
chr7129844955129845039-5'-UTR,intron-Distal3.564383.88924K562PRPF8
chr7129845212129845253-5'-UTR,CDS,intron-Distal,intron-Proximal3.826437.79732K562DDX3X
chr7129845122129845213-5'-UTR,intron-Distal,intron-Proximal5.2697521.77316K562AQR
chr7129823974129824026-CDS,intron-Distal,intron-Proximal3.587105.35619K562AQR
chr7129813471129813528-CDS,intron-Distal,intron-Proximal4.053743.25872K562IGF2BP1
chr7129813469129813560-CDS,intron-Distal,intron-Proximal3.220986.84704K562DDX24
chr7129843906129843960-CDS,intron-Distal,intron-Proximal4.067217.70980K562BUD13
chr7129825132129825205-CDS,intron-Distal3.382668.13434K562SND1
chr7129841913129841931-CDS,intron-Distal3.035653.46769K562YBX3
chr7129813765129813779-CDS,intron-Distal3.836053.25175K562YBX3
chr7129818242129818293-CDS,intron-Distal,intron-Proximal3.251144.50206K562SND1
chr7129825064129825125-CDS,intron-Distal3.965998.32138K562SND1
chr7129843813129843896-CDS,intron-Distal,intron-Proximal4.5330622.79129K562LIN28B
chr7129832555129832662-CDS,intron-Distal3.3434310.24734K562SND1
chr7129818330129818413-CDS,intron-Distal,intron-Proximal4.312117.15298K562AQR
chr7129825162129825264-CDS,intron-Distal,intron-Proximal3.680395.47851K562SF3B4
chr7129843815129843888-CDS,intron-Distal3.837454.48787K562FTO
chr7129842279129842374-CDS,intron-Distal,intron-Proximal4.062239.10472K562AQR
chr7129813665129813774-CDS,intron-Distal,intron-Proximal3.791043.31827HepG2GRWD1
chr7129843910129843978-CDS,intron-Distal,intron-Proximal4.214508.79285K562AQR
chr7129832460129832500-CDS,intron-Distal,intron-Proximal3.266273.95463K562ZNF800
chr7129841693129841753-CDS,intron-Distal,intron-Proximal3.171216.57858K562SND1
chr7129815396129815441-CDS,intron-Distal4.068947.35426K562SND1
chr7129825166129825213-CDS,intron-Distal,intron-Proximal3.429945.85200K562BUD13
chr7129843814129843905-CDS,intron-Distal3.004676.89497K562DDX3X
chr7129843567129843621-intron-Distal,intron-Proximal5.167366.04760K562AQR
chr7129821407129821462-intron-Distal,intron-Proximal4.172064.49024K562AQR
chr7129810133129810185-intron-Distal,intron-Proximal3.477363.54718K562PRPF8
chr7129832268129832324-intron-Distal4.3646510.17421K562QKI
chr7129834830129834896-intron-Distal3.396764.64200K562KHDRBS1
chr7129835081129835199-intron-Distal3.374434.83972K562KHDRBS1
chr7129808583129808724-intron-Distal5.267116.23225K562QKI
chr7129834512129834608-intron-Distal4.422684.43126K562KHDRBS1
chr7129824962129825030-intron-Distal,intron-Proximal5.085046.22530K562AQR
chr7129831399129831456-intron-Distal3.534983.68839K562KHSRP
chr7129831473129831573-intron-Distal4.478334.07352K562KHSRP
chr7129827589129827715-intron-Distal3.533134.08043K562HNRNPM
chr7129815264129815316-intron-Distal,intron-Proximal3.471175.66421K562PRPF8
chr7129835395129835461-intron-Distal3.062243.70419K562KHDRBS1
chr7129826555129826635-intron-Distal3.505234.10408K562KHSRP
chr7129832324129832419-intron-Distal,intron-Proximal5.7435115.93068K562QKI
chr7129842257129842328-intron-Distal,intron-Proximal5.351835.43043K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM209 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM209 is not available on ENCORE database.

  • 95 RBPs can affect the levels of TMEM209.  








The Knockdown/knockout RNA-Seq assay for TMEM209 is not available on ENCORE database.





95 RBPs can affect the gene expression of TMEM209 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM209ENSG00000146842.12473.57170670.37200-0.501402.672001.74470HepG2ABCF1
TMEM209ENSG00000146842.12323.33910531.71900-0.717605.327304.25480HepG2ASCC1
TMEM209ENSG00000146842.12547.38640716.25290-0.387903.534902.77580HepG2AUH
TMEM209ENSG00000146842.12305.06060427.90880-0.488202.292901.47680HepG2BCLAF1
TMEM209ENSG00000146842.12824.45530548.598300.587605.514404.70450HepG2BOP1
TMEM209ENSG00000146842.12474.68980628.32280-0.404502.840002.05880HepG2CALR
TMEM209ENSG00000146842.12376.88900462.60910-0.295701.915201.34770HepG2CKAP4
TMEM209ENSG00000146842.12651.72870393.062400.729404.112003.17300HepG2CNOT7
TMEM209ENSG00000146842.12331.37610427.92110-0.368902.713701.88720HepG2DDX19B
TMEM209ENSG00000146842.12332.57440484.17190-0.541802.705401.93850HepG2DDX55
TMEM209ENSG00000146842.12297.36480528.75760-0.830406.018205.13610HepG2DDX6
TMEM209ENSG00000146842.12299.84000442.65910-0.562004.530803.70120HepG2DKC1
TMEM209ENSG00000146842.12292.06520508.36050-0.799606.099505.23840HepG2EIF2S1
TMEM209ENSG00000146842.12501.21460637.75640-0.347602.855702.00740HepG2EIF4G1
TMEM209ENSG00000146842.12464.61930610.95060-0.395002.593701.80340HepG2EIF4G2
TMEM209ENSG00000146842.12328.73340570.99710-0.796604.783003.95620HepG2GPKOW
TMEM209ENSG00000146842.12316.00050510.49680-0.692005.538704.66810HepG2HNRNPA1
TMEM209ENSG00000146842.12335.87110567.83400-0.757606.634805.59860HepG2HNRNPC
TMEM209ENSG00000146842.12487.97390654.06580-0.422603.894303.05760HepG2HNRNPF
TMEM209ENSG00000146842.12452.97090589.00830-0.378903.608302.84470HepG2HNRNPL
TMEM209ENSG00000146842.12310.23270564.07980-0.8625011.9861010.79780HepG2HNRNPU
TMEM209ENSG00000146842.12443.20440644.06850-0.539204.948604.00570HepG2IGF2BP1
TMEM209ENSG00000146842.12463.86840576.18870-0.312802.592401.88090HepG2ILF2
TMEM209ENSG00000146842.12718.32470547.918900.390602.804601.99070HepG2MSI2
TMEM209ENSG00000146842.12513.58790641.12130-0.320001.992601.34270HepG2NOL12
TMEM209ENSG00000146842.12287.39050483.12490-0.749404.063503.16150HepG2NSUN2
TMEM209ENSG00000146842.12392.93510503.11390-0.356602.402001.71110HepG2PPIL4
TMEM209ENSG00000146842.12433.88000555.86150-0.357402.626602.09150HepG2PTBP1
TMEM209ENSG00000146842.12393.52930611.96920-0.637005.956405.12520HepG2PUF60
TMEM209ENSG00000146842.12469.46890602.04930-0.358902.479101.88240HepG2QKI
TMEM209ENSG00000146842.12501.90220638.65490-0.347602.380601.57930HepG2RBM15
TMEM209ENSG00000146842.12382.73980502.33760-0.392303.050102.37990HepG2SAFB2
TMEM209ENSG00000146842.12468.34650578.75520-0.305402.059701.53830HepG2SF3B4
TMEM209ENSG00000146842.12408.32600586.69350-0.522905.847304.88860HepG2SLBP
TMEM209ENSG00000146842.12406.06950585.80980-0.528705.865904.98380HepG2SMN1
TMEM209ENSG00000146842.12390.64350555.78040-0.508702.698301.75490HepG2SMNDC1
TMEM209ENSG00000146842.12818.06420600.147100.446802.115201.43500HepG2SNRNP70
TMEM209ENSG00000146842.12499.63600776.30590-0.635708.778508.02370HepG2SRFBP1
TMEM209ENSG00000146842.12810.82190580.287300.482502.827501.81380HepG2SRSF3
TMEM209ENSG00000146842.12375.86250642.59650-0.7737010.672009.45800HepG2SRSF7
TMEM209ENSG00000146842.12395.76530674.04530-0.7682010.847209.96150HepG2SSB
TMEM209ENSG00000146842.12329.95220481.99480-0.546802.706102.03570HepG2SUPV3L1
TMEM209ENSG00000146842.12134.43700323.06980-1.2649010.275608.59670HepG2TFIP11
TMEM209ENSG00000146842.12228.62510548.10630-1.2615018.8739017.78210HepG2TIAL1
TMEM209ENSG00000146842.12306.80900553.00870-0.8500011.8314010.78300HepG2TRIM56
TMEM209ENSG00000146842.12404.46070556.86580-0.461304.236003.40150HepG2UPF1
TMEM209ENSG00000146842.12274.69480441.38390-0.684203.168202.09240HepG2UPF2
TMEM209ENSG00000146842.12683.19350537.633700.345602.916202.30510HepG2UTP3
TMEM209ENSG00000146842.12208.40080474.47080-1.1870010.941509.51580HepG2XRN2
TMEM209ENSG00000146842.12450.99310549.59340-0.285302.003501.41790HepG2ZC3H8
TMEM209ENSG00000146842.124741.877105615.02170-0.243802.021301.46100K562AKAP8L
TMEM209ENSG00000146842.123713.848304821.56740-0.376604.409102.78390K562APOBEC3C
TMEM209ENSG00000146842.122307.606504055.23030-0.8134015.6289014.38930K562AQR
TMEM209ENSG00000146842.122178.822402849.86480-0.387307.431405.83430K562BCLAF1
TMEM209ENSG00000146842.123082.515204215.37730-0.451602.350901.38690K562CNOT7
TMEM209ENSG00000146842.124091.632904854.77740-0.246703.441102.20110K562CPEB4
TMEM209ENSG00000146842.122420.173303041.28500-0.329603.666702.76450K562CPSF6
TMEM209ENSG00000146842.121775.805202162.04690-0.283903.314502.14200K562CSTF2
TMEM209ENSG00000146842.125405.089306718.57590-0.313804.167402.96200K562CELF1
TMEM209ENSG00000146842.122605.258003139.18530-0.269003.612902.22780K562DDX21
TMEM209ENSG00000146842.122444.818302980.93350-0.286002.699801.67000K562DDX3X
TMEM209ENSG00000146842.124096.969305023.67610-0.294205.183304.33030K562DDX47
TMEM209ENSG00000146842.122427.496003022.30760-0.316204.094302.41350K562DDX6
TMEM209ENSG00000146842.127401.835906042.243200.292704.632903.45510K562DKC1
TMEM209ENSG00000146842.121531.952902083.96280-0.444004.544602.79810K562DNAJC21
TMEM209ENSG00000146842.123614.617102623.729300.462103.483502.03420K562EEF2
TMEM209ENSG00000146842.121653.397402534.98690-0.616507.950806.33440K562EFTUD2
TMEM209ENSG00000146842.122162.684103274.45020-0.5984015.3557012.56610K562EIF2S1
TMEM209ENSG00000146842.122471.938402863.24860-0.212002.270001.60930K562EIF2S2
TMEM209ENSG00000146842.121914.456902714.11720-0.503504.298502.97170K562EIF3D
TMEM209ENSG00000146842.121944.131403114.39640-0.6798010.985009.32780K562EIF4A3
TMEM209ENSG00000146842.123969.313505464.24530-0.4611010.112208.35470K562EIF4G2
TMEM209ENSG00000146842.122411.158102907.95670-0.270302.531201.32380K562EXOSC5
TMEM209ENSG00000146842.123575.480002745.049500.381204.243302.22240K562FASTKD2
TMEM209ENSG00000146842.122486.752303546.88740-0.512306.532405.18920K562FIP1L1
TMEM209ENSG00000146842.122227.250003094.47660-0.474405.284904.09670K562FMR1
TMEM209ENSG00000146842.121902.594602622.86600-0.463204.262503.10490K562FTO
TMEM209ENSG00000146842.122354.220603238.85100-0.460208.884907.87470K562FXR1
TMEM209ENSG00000146842.124576.278403349.484100.450103.218702.44720K562G3BP2
TMEM209ENSG00000146842.122230.199402903.66170-0.380704.066803.10840K562GPKOW
TMEM209ENSG00000146842.122477.050503815.54940-0.623306.199305.06270K562GRSF1
TMEM209ENSG00000146842.121574.093403023.87120-0.9419022.3371020.71740K562HNRNPC
TMEM209ENSG00000146842.122064.329902700.26540-0.387404.186802.75040K562HNRNPF
TMEM209ENSG00000146842.123251.120104539.98920-0.481807.041905.27410K562HNRNPL
TMEM209ENSG00000146842.122271.059203729.05920-0.7154018.7740016.56100K562HNRNPU
TMEM209ENSG00000146842.122931.136004168.80400-0.508207.338605.94260K562MAGOH
TMEM209ENSG00000146842.121686.381502834.30510-0.7491013.9489011.92960K562METAP2
TMEM209ENSG00000146842.124312.307405824.36170-0.433605.075603.55130K562MSI2
TMEM209ENSG00000146842.122674.868303379.25240-0.337206.646705.44230K562MTPAP
TMEM209ENSG00000146842.123074.921503754.77770-0.288207.380106.24350K562NSUN2
TMEM209ENSG00000146842.121983.932503709.38350-0.9028019.8407017.12450K562PCBP2
TMEM209ENSG00000146842.122380.155203698.90970-0.636007.773606.37700K562PCBP3
TMEM209ENSG00000146842.121858.105302837.19570-0.6106011.230909.66890K562POLR2G
TMEM209ENSG00000146842.123239.433904026.54680-0.313802.625501.82910K562PPIG
TMEM209ENSG00000146842.123091.730604050.18030-0.389605.081604.20520K562PTBP1
TMEM209ENSG00000146842.123983.245305961.92010-0.581808.675107.21870K562PUF60
TMEM209ENSG00000146842.125428.176406213.35770-0.194902.192201.33620K562PUM2
TMEM209ENSG00000146842.122446.466403884.17890-0.6669010.659108.84700K562RBM22
TMEM209ENSG00000146842.123145.439102473.546000.346603.963002.77420K562RCC2
TMEM209ENSG00000146842.122742.451004087.35080-0.575707.307305.45300K562NELFE
TMEM209ENSG00000146842.121933.933102512.68810-0.377702.618901.82690K562RPS19
TMEM209ENSG00000146842.122513.004403150.88900-0.326302.569201.60770K562RPS3
TMEM209ENSG00000146842.122759.203603704.82170-0.425207.975106.65160K562SF3A3
TMEM209ENSG00000146842.122587.113603483.10720-0.429006.340905.01160K562SF3B4
TMEM209ENSG00000146842.121538.999602134.57680-0.472004.993303.26580K562SLBP
TMEM209ENSG00000146842.122962.547702356.168200.330303.067801.37910K562SND1
TMEM209ENSG00000146842.122816.932103970.41620-0.495207.726006.54970K562SRSF1
TMEM209ENSG00000146842.122351.365103041.81550-0.371404.282802.92890K562SRSF4
TMEM209ENSG00000146842.122162.222102801.67890-0.373805.569603.89480K562SRSF7
TMEM209ENSG00000146842.121713.281502388.31940-0.479204.210402.93280K562SUPV3L1
TMEM209ENSG00000146842.122698.315204018.55910-0.574607.442706.21890K562TARDBP
TMEM209ENSG00000146842.121352.071402177.17350-0.687307.981205.27830K562TFIP11
TMEM209ENSG00000146842.123244.603203876.29130-0.256602.144001.43180K562TIA1
TMEM209ENSG00000146842.122537.106503247.00050-0.355902.600401.54400K562U2AF1
TMEM209ENSG00000146842.122841.889103353.35910-0.238802.292601.56300K562U2AF2
TMEM209ENSG00000146842.123007.235803981.26050-0.404809.291408.06840K562UPF1
TMEM209ENSG00000146842.121942.191802574.09250-0.406403.641202.18560K562XRN2
TMEM209ENSG00000146842.123530.360304567.87600-0.371703.981302.91370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM209 is not available on ENCORE database.





14 RBPs can affect the splicing of TMEM209 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM209ENSG00000146842.12chr7-1298182411298183671298153511298154491298214621298215590.084000.000310.06361includedK562FTO
SETMEM209ENSG00000146842.12chr7-129813471129813534129810239129810313129813664129813779-0.133000.000070.00133excludedK562AQR
SETMEM209ENSG00000146842.12chr7-129821462129821559129813664129813779129824023129824095-0.079000.000020.00033excludedK562AQR
SETMEM209ENSG00000146842.12chr7-129818241129818367129815351129815449129821462129821559-0.086000.000010.00018excludedK562PUS1
SETMEM209ENSG00000146842.12chr7-129821462129821559129818241129818367129824023129824095-0.060000.000010.00221excludedK562HNRNPUL1
SETMEM209ENSG00000146842.12chr7-129821462129821559129818241129818367129824023129824095-0.072000.000000.00001excludedK562UTP18
SETMEM209ENSG00000146842.12chr7-129818241129818367129815351129815449129821462129821559-0.177000.000000.00000excludedK562U2AF2
SETMEM209ENSG00000146842.12chr7-129821462129821559129818241129818367129824023129824095-0.060000.000000.00017excludedK562RBM15
SETMEM209ENSG00000146842.12chr7-129821462129821559129818241129818367129824023129824095-0.063000.000000.00015excludedK562AGGF1
SETMEM209ENSG00000146842.12chr7-129818241129818367129815351129815449129821462129821559-0.107000.003250.04976excludedK562HNRNPC
A3SSTMEM209ENSG00000146842.12chr7-1298153511298154781298153511298154491298182411298183670.065000.000020.00306longerK562AKAP8L
A3SSTMEM209ENSG00000146842.12chr7-129815351129815478129815351129815449129821462129821559-0.213000.002750.08459shorterK562U2AF2
A3SSTMEM209ENSG00000146842.12chr7-1298153511298155121298153511298154491298182411298183920.090000.000000.00000longerK562AQR
MXETMEM209ENSG00000146842.12chr7-129821462129821559129824023129824095129815351129815449129825031129825207-0.071000.000020.000802includedK562PUS1
MXETMEM209ENSG00000146842.12chr7-129815351129815478129818241129818367129813664129813779129821462129821559-0.093000.015000.087622includedK562AQR
MXETMEM209ENSG00000146842.12chr7-129818241129818367129821462129821559129815351129815449129824023129824095-0.169000.000110.029252includedK562SDAD1
MXETMEM209ENSG00000146842.12chr7-129818241129818367129821462129821559129815351129815449129824023129824095-0.143000.001710.063482includedK562SAFB
MXETMEM209ENSG00000146842.12chr7-129818241129818367129821462129821559129815351129815449129824023129824095-0.160000.000090.006032includedK562PPIL4
MXETMEM209ENSG00000146842.12chr7-129818241129818367129821462129821559129815351129815449129824023129824095-0.255000.000000.000002includedK562DHX30
MXETMEM209ENSG00000146842.12chr7-129815351129815449129821462129821559129813664129813779129824023129824095-0.107000.000110.005132includedK562HNRNPUL1
MXETMEM209ENSG00000146842.12chr7-129815351129815449129818241129818367129813664129813779129821462129821559-0.101000.000370.012622includedK562HNRNPUL1
MXETMEM209ENSG00000146842.12chr7-129815351129815478129818241129818367129813664129813779129821462129821559-0.110000.000350.012262includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM209 is not avaliable on ENCORE database.