TM4SF5

General Information

Gene Name       : TM4SF5
Gene ID             : ENSG00000142484.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TM4SF5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TM4SF5ENSG00000142484.60.000.000.00ENCSR000AEF
HepG2TM4SF5ENSG00000142484.644.2414.8929.57ENCSR985KAT
K562TM4SF5ENSG00000142484.60.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TM4SF5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TM4SF5 RNA is bound by 11 proteins.  







eCLIP assay for TM4SF5 is not avaliable on ENCORE database.





11 proteins are bound to TM4SF5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1746752004675323+5'-UTR,CDS3.6200216.54531HepG2DDX3X
chr1746861704686223+CDS3.110386.64770HepG2XPO5
chr1746862334686260+CDS6.1936431.45473HepG2SND1
chr1746860774686185+CDS,intron-Proximal4.7966319.18384HepG2AQR
chr1746858184685832+CDS6.7299927.09410HepG2SND1
chr1746862924686303+CDS4.723455.27053HepG2PPIG
chr1746861814686206+CDS4.025966.50183HepG2PRPF8
chr1746858934685911+CDS4.8789446.04226HepG2SND1
chr1746861524686157+CDS5.4833136.97086HepG2SND1
chr1746859334685974+CDS,intron-Proximal4.717207.84250HepG2AQR
chr1746861674686217+CDS6.85408400.00000HepG2SND1
chr1746752464675339+CDS4.9144433.40809HepG2RPS3
chr1746861074686170+CDS,intron-Proximal3.314376.22023HepG2SUPV3L1
chr1746859114685934+CDS5.9647056.29816HepG2SND1
chr1746861414686168+CDS,intron-Proximal3.416545.18360HepG2PRPF8
chr1746858594685869+CDS5.1716229.73603HepG2SND1
chr1746841034684153+CDS4.2906936.45716HepG2SND1
chr1746861574686167+CDS5.5789937.63688HepG2SND1
chr1746861484686152+CDS,intron-Proximal5.7109541.64130HepG2SND1
chr1746840854684141+CDS5.0996525.62080HepG2RPS3
chr1746766754676753+intron-Distal3.934626.41317HepG2QKI
chr1746860194686071+intron-Distal,intron-Proximal3.511456.05284HepG2SUPV3L1
chr1746859874686040+intron-Distal,intron-Proximal3.343079.61968HepG2BUD13
chr1746859684686019+intron-Proximal3.1335410.96110HepG2SUPV3L1
chr1746859684686021+intron-Proximal4.221166.08255HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TM4SF5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TM4SF5 is not available on ENCORE database.

  • 119 RBPs can affect the levels of TM4SF5.  








The Knockdown/knockout RNA-Seq assay for TM4SF5 is not available on ENCORE database.





119 RBPs can affect the gene expression of TM4SF5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TM4SF5ENSG00000142484.5426.43040573.92350-0.428502.280501.30500HepG2AATF
TM4SF5ENSG00000142484.5418.63100755.71460-0.852202.237301.38660HepG2ABCF1
TM4SF5ENSG00000142484.5514.629201083.93720-1.0747029.3275027.84560HepG2ACO1
TM4SF5ENSG00000142484.5420.030402773.70400-2.7232021.4646020.13170HepG2AKAP1
TM4SF5ENSG00000142484.54254.720402294.804900.8906011.5764010.05240HepG2ASCC1
TM4SF5ENSG00000142484.51398.398401198.168300.222802.265501.63290HepG2AUH
TM4SF5ENSG00000142484.5952.22630440.531201.1120012.7870011.04720HepG2BCLAF1
TM4SF5ENSG00000142484.5498.26600150.015401.7317024.4115022.91600HepG2BOP1
TM4SF5ENSG00000142484.5227.12190593.64780-1.3861012.5257010.51400HepG2CCAR1
TM4SF5ENSG00000142484.51438.771602180.28800-0.599703.079402.26560HepG2CIRBP
TM4SF5ENSG00000142484.5913.874201473.23860-0.688902.089301.42920HepG2CNOT7
TM4SF5ENSG00000142484.5497.06100137.716601.8516025.8561024.02260HepG2CPSF6
TM4SF5ENSG00000142484.51198.56190621.841000.946607.183505.48140HepG2CPSF7
TM4SF5ENSG00000142484.5745.68390413.938600.8490012.7302010.66080HepG2YBX3
TM4SF5ENSG00000142484.5140.33510313.12760-1.1579010.011408.17790HepG2CSTF2
TM4SF5ENSG00000142484.51545.57950870.249600.8285011.016009.90090HepG2CELF1
TM4SF5ENSG00000142484.51722.18220935.802900.8799029.5489027.62580HepG2DAZAP1
TM4SF5ENSG00000142484.5803.794101002.42540-0.318603.727202.77790HepG2DDX19B
TM4SF5ENSG00000142484.5334.32040632.46310-0.919709.066807.91250HepG2DDX21
TM4SF5ENSG00000142484.5395.71340619.53440-0.646704.167303.03590HepG2DDX24
TM4SF5ENSG00000142484.5804.74820466.414700.786805.045403.36660HepG2DDX27
TM4SF5ENSG00000142484.5765.30120377.584101.0191011.124708.68780HepG2DDX28
TM4SF5ENSG00000142484.5890.32410498.551000.836506.871905.71890HepG2DDX55
TM4SF5ENSG00000142484.51232.15790540.813701.187906.669805.15730HepG2DDX5
TM4SF5ENSG00000142484.53109.898002283.066100.445802.919302.28670HepG2DDX6
TM4SF5ENSG00000142484.5729.29250392.023300.8955011.143809.34580HepG2DHX30
TM4SF5ENSG00000142484.5838.138401036.99980-0.307202.967802.26830HepG2DKC1
TM4SF5ENSG00000142484.51053.62650406.450401.3741036.5347034.32730HepG2DNAJC21
TM4SF5ENSG00000142484.5649.79970402.870400.6896010.394709.22780HepG2DNAJC2
TM4SF5ENSG00000142484.5368.04680528.27500-0.521402.438001.57030HepG2EEF2
TM4SF5ENSG00000142484.53178.569802193.752200.534904.865004.09030HepG2EIF2S1
TM4SF5ENSG00000142484.5435.88890597.67320-0.455402.329901.33650HepG2EIF3G
TM4SF5ENSG00000142484.51381.500902360.90790-0.773103.230702.49080HepG2EIF4B
TM4SF5ENSG00000142484.51110.43440884.344800.328302.148701.42460HepG2EIF4G2
TM4SF5ENSG00000142484.5388.16400654.31640-0.753302.727101.64320HepG2ESF1
TM4SF5ENSG00000142484.51113.425101375.56640-0.305002.192301.64600HepG2ETF1
TM4SF5ENSG00000142484.5667.440201059.08210-0.666106.479805.20350HepG2EWSR1
TM4SF5ENSG00000142484.5567.60270383.352200.566104.851603.26630HepG2FAM120A
TM4SF5ENSG00000142484.51002.07040603.040700.732603.692502.39950HepG2FASTKD2
TM4SF5ENSG00000142484.5280.73060762.98540-1.442505.151004.12990HepG2FIP1L1
TM4SF5ENSG00000142484.5683.63390414.939200.720205.365003.64180HepG2FKBP4
TM4SF5ENSG00000142484.5389.44500137.964501.497005.523004.09390HepG2FTO
TM4SF5ENSG00000142484.5378.26480552.55940-0.546702.797601.67640HepG2FUS
TM4SF5ENSG00000142484.5948.577902447.06160-1.367208.929007.74870HepG2FXR1
TM4SF5ENSG00000142484.51307.548802410.09640-0.882204.827303.63750HepG2G3BP2
TM4SF5ENSG00000142484.5103.28950381.74670-1.8859015.4491013.50190HepG2GEMIN5
TM4SF5ENSG00000142484.5351.27480156.096901.170107.444706.42450HepG2GPKOW
TM4SF5ENSG00000142484.5870.163101364.03550-0.648502.792001.67550HepG2GRSF1
TM4SF5ENSG00000142484.5768.092401034.76900-0.430005.035903.75820HepG2HDGF
TM4SF5ENSG00000142484.5248.54780410.34440-0.723303.961403.20760HepG2HNRNPA1
TM4SF5ENSG00000142484.51219.11050859.995400.503307.097205.72110HepG2HNRNPA2B1
TM4SF5ENSG00000142484.5832.69810456.435300.8673010.298209.03560HepG2HNRNPC
TM4SF5ENSG00000142484.51765.825101276.204600.468402.964901.39860HepG2HNRNPD
TM4SF5ENSG00000142484.51124.88720373.573701.5902053.4642051.12010HepG2HNRNPF
TM4SF5ENSG00000142484.51230.504902299.62200-0.902104.852103.94710HepG2HNRNPK
TM4SF5ENSG00000142484.51934.42190852.466301.1821053.9765051.47830HepG2HNRNPL
TM4SF5ENSG00000142484.5669.23710148.967502.1674037.8772035.97050HepG2HNRNPLL
TM4SF5ENSG00000142484.51079.97660367.865301.5537040.2121037.96910HepG2IGF2BP1
TM4SF5ENSG00000142484.51601.524602306.34190-0.526202.322801.69860HepG2IGF2BP2
TM4SF5ENSG00000142484.5653.607402165.52170-1.728208.701707.03190HepG2IGF2BP3
TM4SF5ENSG00000142484.5670.29800463.150400.533206.954505.84570HepG2ILF2
TM4SF5ENSG00000142484.51320.276102320.30560-0.813504.437603.14020HepG2KHSRP
TM4SF5ENSG00000142484.51373.75870990.771700.471408.822407.09220HepG2KIF1C
TM4SF5ENSG00000142484.5409.19600627.19420-0.616102.753401.92540HepG2LARP4
TM4SF5ENSG00000142484.51302.312302447.92250-0.910505.214804.32010HepG2MAGOH
TM4SF5ENSG00000142484.5781.128202461.38170-1.6558010.871909.68150HepG2MATR3
TM4SF5ENSG00000142484.5295.14900151.961700.957603.023702.00730HepG2MTPAP
TM4SF5ENSG00000142484.51279.427902519.16460-0.977405.633504.74390HepG2NCBP2
TM4SF5ENSG00000142484.51157.32120927.936400.318602.747901.98660HepG2NOL12
TM4SF5ENSG00000142484.5281.76740132.099501.092807.066305.90780HepG2NSUN2
TM4SF5ENSG00000142484.52865.450102242.578200.353502.186501.53920HepG2PABPC4
TM4SF5ENSG00000142484.51824.120102252.57410-0.304403.336702.68400HepG2PCBP1
TM4SF5ENSG00000142484.5964.13310627.876600.618703.427801.56060HepG2PHF6
TM4SF5ENSG00000142484.51920.755201321.458200.539403.085301.47970HepG2PNPT1
TM4SF5ENSG00000142484.5694.18710404.411600.7794010.827909.42000HepG2PPIL4
TM4SF5ENSG00000142484.5214.84790549.77440-1.355509.956607.79970HepG2PRPF6
TM4SF5ENSG00000142484.51083.612602292.21970-1.0809021.3286020.08540HepG2PTBP1
TM4SF5ENSG00000142484.51490.00530885.776800.7502011.1245010.03740HepG2PUF60
TM4SF5ENSG00000142484.5757.20120939.59560-0.311402.478501.84380HepG2PUM2
TM4SF5ENSG00000142484.5314.787901149.73800-1.8689033.2676031.85940HepG2RBM22
TM4SF5ENSG00000142484.51011.499002252.89640-1.1553029.1225027.10810HepG2RBM25
TM4SF5ENSG00000142484.5370.876702550.90300-2.7820095.6074093.58820HepG2NELFE
TM4SF5ENSG00000142484.5973.561902376.03250-1.2872029.6436028.01140HepG2RECQL
TM4SF5ENSG00000142484.51005.24040402.403201.320707.192006.16680HepG2RPLP0
TM4SF5ENSG00000142484.5948.36350495.937200.935207.684106.17840HepG2RPS10
TM4SF5ENSG00000142484.5160.27660417.28360-1.3805010.531409.42650HepG2RPS19
TM4SF5ENSG00000142484.5473.47160727.95200-0.620605.551804.44120HepG2RPS2
TM4SF5ENSG00000142484.5893.85300380.297001.232809.969008.61200HepG2RRP9
TM4SF5ENSG00000142484.5892.30890403.786501.1439028.1715026.42700HepG2SAFB2
TM4SF5ENSG00000142484.5235.21590731.54680-1.6370019.9268018.07250HepG2SF3A3
TM4SF5ENSG00000142484.5648.07230147.439402.1359039.1180036.85890HepG2SF3B1
TM4SF5ENSG00000142484.51205.626502386.24310-0.9850025.4688023.98360HepG2SF3B4
TM4SF5ENSG00000142484.51801.82320849.274501.0851043.0656041.00460HepG2SLBP
TM4SF5ENSG00000142484.51082.84100515.350901.0711011.526409.50710HepG2SMNDC1
TM4SF5ENSG00000142484.5787.88850491.848500.679704.949802.76990HepG2SND1
TM4SF5ENSG00000142484.5719.50490164.055402.1327026.2790023.95200HepG2SNRNP70
TM4SF5ENSG00000142484.5860.461001298.62040-0.593807.917707.19050HepG2SRFBP1
TM4SF5ENSG00000142484.5223.866902490.82460-3.47590125.69550123.71030HepG2SRSF1
TM4SF5ENSG00000142484.51036.53210874.547900.245102.049301.50070HepG2SRSF5
TM4SF5ENSG00000142484.51302.19010367.017601.8269074.2002071.80780HepG2SRSF7
TM4SF5ENSG00000142484.5846.797201127.56860-0.413104.521403.89790HepG2SSB
TM4SF5ENSG00000142484.5875.04060509.200500.781003.118901.81580HepG2STAU1
TM4SF5ENSG00000142484.5712.93990471.571900.596203.111301.82920HepG2SUB1
TM4SF5ENSG00000142484.5439.08750994.62560-1.1796031.7001029.98840HepG2SUCLG1
TM4SF5ENSG00000142484.51354.42530514.808001.395507.476705.98720HepG2SUPT6H
TM4SF5ENSG00000142484.51486.74980496.261401.5829026.9726025.25740HepG2SUPV3L1
TM4SF5ENSG00000142484.5726.134102239.13740-1.6246041.0928039.27030HepG2TAF15
TM4SF5ENSG00000142484.5410.84960145.238601.5001016.5407015.02600HepG2TARDBP
TM4SF5ENSG00000142484.5897.57040332.603201.4321015.4344013.49130HepG2TFIP11
TM4SF5ENSG00000142484.51338.84420444.518901.5906062.0941059.89760HepG2TRIM56
TM4SF5ENSG00000142484.51694.17470865.328700.969208.695006.99600HepG2TUFM
TM4SF5ENSG00000142484.5548.07810293.130700.902708.150006.85070HepG2UCHL5
TM4SF5ENSG00000142484.51066.54560648.773300.7171014.0608012.71680HepG2UPF1
TM4SF5ENSG00000142484.5318.67570454.32230-0.511602.422001.48750HepG2UPF2
TM4SF5ENSG00000142484.5487.38900666.82500-0.452204.017702.78160HepG2UTP18
TM4SF5ENSG00000142484.5181.60170626.36040-1.7862027.1491025.57540HepG2UTP3
TM4SF5ENSG00000142484.52034.322601326.262500.617104.761303.30700HepG2XPO5
TM4SF5ENSG00000142484.5213.82850555.04750-1.3762013.3907011.27130HepG2XRCC6
TM4SF5ENSG00000142484.51339.34000713.522000.9084016.7088015.64780HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TM4SF5 is not available on ENCORE database.





9 RBPs can affect the splicing of TM4SF5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTM4SF5ENSG00000142484.5chr17+468614846863324686264468633246857974685934-0.548000.000000.00001shorterHepG2U2AF2
A3SSTM4SF5ENSG00000142484.5chr17+468614846863324686264468633246857974685934-0.547000.000000.00000shorterHepG2U2AF1
RITM4SF5ENSG00000142484.5chr17+468579746863324685797468593446861484686332-0.098000.000030.00880excludedHepG2UPF1
RITM4SF5ENSG00000142484.5chr17+4685797468633246857974685934468614846863320.099000.000040.00385includedHepG2BCCIP
RITM4SF5ENSG00000142484.5chr17+468579746863324685797468593446862644686332-0.361000.000000.00000excludedHepG2U2AF2
RITM4SF5ENSG00000142484.5chr17+4685797468633246857974685934468614846863320.144000.000000.00036includedHepG2UCHL5
RITM4SF5ENSG00000142484.5chr17+468579746863324685797468593446861484686332-0.080000.000500.08166excludedHepG2DKC1
RITM4SF5ENSG00000142484.5chr17+4685797468633246857974685934468614846863320.058000.000500.00677includedHepG2TAF15
RITM4SF5ENSG00000142484.5chr17+468579746863324685797468593446862644686332-0.364000.000000.00000excludedHepG2U2AF1
RITM4SF5ENSG00000142484.5chr17+4685797468633246857974685934468614846863320.065000.000010.00083includedHepG2KHSRP
RITM4SF5ENSG00000142484.5chr17+4685797468633246857974685934468614846863320.100000.000030.00320includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TM4SF5 is not avaliable on ENCORE database.