SRCRB4D

General Information

Gene Name       : SRCRB4D
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SRCRB4D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SRCRB4D is not avaliable on ENCORE database.



Proteins bound to RNA
  • SRCRB4D RNA is bound by 10 proteins.  







eCLIP assay for SRCRB4D is not avaliable on ENCORE database.





10 proteins are bound to SRCRB4D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77601919976019287-3'-UTR,intron-Distal3.668625.40760HepG2UPF1
chr77601921476019303-3'-UTR,intron-Distal3.290225.00851HepG2LARP4
chr77601886676019006-3'-UTR,intron-Distal5.079777.70160HepG2UPF1
chr77601918476019265-3'-UTR,intron-Distal3.219023.77798HepG2IGF2BP1
chr77603897076039011-5'-UTR,intron-Distal4.156643.72434HepG2NCBP2
chr77603889676038970-5'-UTR,intron-Distal3.250047.18294HepG2NCBP2
chr77603368676033759-5'-UTR,CDS,intron-Distal3.692758.74774HepG2PPIG
chr77602290776023034-CDS,intron-Distal,intron-Proximal3.604435.85977HepG2GRSF1
chr77602956876029627-CDS,intron-Distal,intron-Proximal4.0563014.92191HepG2PRPF8
chr77602698176027070-CDS,intron-Distal3.021916.71582HepG2PPIG
chr77602690076026961-CDS,intron-Distal3.868207.55042HepG2PPIG
chr77602317776023211-CDS,intron-Distal3.816384.68902HepG2PPIG
chr77602301876023105-CDS,intron-Distal,intron-Proximal5.233378.23509HepG2AQR
chr77602307076023121-intron-Distal,intron-Proximal3.162234.60847HepG2PRPF8
chr77602813276028202-intron-Distal,intron-Proximal4.122233.31322HepG2SF3B4
chr77603225876032327-intron-Distal3.531773.22526HepG2QKI
chr77603232776032387-intron-Distal5.342768.68064HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SRCRB4D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SRCRB4D is not available on ENCORE database.

  • 117 RBPs can affect the levels of SRCRB4D.  








The Knockdown/knockout RNA-Seq assay for SRCRB4D is not available on ENCORE database.





117 RBPs can affect the gene expression of SRCRB4D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SRCRB4DENSG00000146700.8251.65870475.27830-0.917306.374203.87410HepG2AARS
SRCRB4DENSG00000146700.8296.69520637.20330-1.1028013.8018011.70030HepG2AATF
SRCRB4DENSG00000146700.8568.40770726.24730-0.353503.359102.69940HepG2ACO1
SRCRB4DENSG00000146700.81208.43500438.948001.4609029.2019026.63590HepG2ADAR
SRCRB4DENSG00000146700.8413.225001418.23600-1.7791033.0582031.48270HepG2AKAP1
SRCRB4DENSG00000146700.8930.21810729.591700.350403.561002.70390HepG2AKAP8L
SRCRB4DENSG00000146700.8628.70490874.88620-0.476705.488304.57800HepG2AUH
SRCRB4DENSG00000146700.8125.22780307.46310-1.2959010.997209.90680HepG2BOP1
SRCRB4DENSG00000146700.8722.81510501.715200.526704.229202.72570HepG2BUD13
SRCRB4DENSG00000146700.8191.72520428.89060-1.1616011.6055010.20250HepG2CALR
SRCRB4DENSG00000146700.82075.824901114.849300.8967013.7376012.16480HepG2CIRBP
SRCRB4DENSG00000146700.81132.37740726.008000.6412012.9279011.70480HepG2CKAP4
SRCRB4DENSG00000146700.8292.83010478.81180-0.709403.622502.74160HepG2CNOT7
SRCRB4DENSG00000146700.8194.81590282.25700-0.534902.421101.77190HepG2CPSF6
SRCRB4DENSG00000146700.8692.67140450.151600.621707.028105.42140HepG2YBX3
SRCRB4DENSG00000146700.8677.60250299.469801.1779015.2291013.05830HepG2CSTF2
SRCRB4DENSG00000146700.8397.29680652.54050-0.715904.826802.87320HepG2CSTF2T
SRCRB4DENSG00000146700.8442.96910689.56460-0.638507.660806.68990HepG2CELF1
SRCRB4DENSG00000146700.8547.15130741.46750-0.438405.126004.16340HepG2DAZAP1
SRCRB4DENSG00000146700.81019.62580671.637300.6022011.029109.58740HepG2DDX19B
SRCRB4DENSG00000146700.81121.55470702.750200.674306.291905.31680HepG2DDX21
SRCRB4DENSG00000146700.8240.16170361.11420-0.588403.166501.67270HepG2DDX28
SRCRB4DENSG00000146700.8595.554501358.46310-1.1897018.6017017.13050HepG2DDX3X
SRCRB4DENSG00000146700.8532.89070720.45290-0.435103.084701.72010HepG2DDX47
SRCRB4DENSG00000146700.8300.52200476.79390-0.665904.328603.38390HepG2DDX55
SRCRB4DENSG00000146700.8186.35930320.52720-0.782402.824301.83590HepG2DDX59
SRCRB4DENSG00000146700.8233.27910481.85140-1.0465010.469808.65730HepG2DDX5
SRCRB4DENSG00000146700.81211.09180694.800800.8015016.5355015.18440HepG2DKC1
SRCRB4DENSG00000146700.8278.87950441.97190-0.664305.960004.95920HepG2DNAJC21
SRCRB4DENSG00000146700.8555.90970438.132000.343402.933202.26450HepG2DNAJC2
SRCRB4DENSG00000146700.8959.73330599.033800.679906.236204.90500HepG2EEF2
SRCRB4DENSG00000146700.8276.02340499.31400-0.855207.606105.76710HepG2EFTUD2
SRCRB4DENSG00000146700.8808.319001121.80800-0.472803.517802.85340HepG2EIF2S1
SRCRB4DENSG00000146700.8363.87410486.23950-0.418202.452201.59570HepG2EIF3D
SRCRB4DENSG00000146700.81218.41380663.788000.8761015.0318012.92840HepG2EIF3G
SRCRB4DENSG00000146700.8373.992201239.61700-1.7288031.8009029.67600HepG2EIF4A3
SRCRB4DENSG00000146700.8530.762701207.15630-1.1855013.0654011.63430HepG2EIF4B
SRCRB4DENSG00000146700.8514.11100709.60110-0.464903.161302.27150HepG2EWSR1
SRCRB4DENSG00000146700.8328.45670434.66130-0.404202.566701.44350HepG2FAM120A
SRCRB4DENSG00000146700.8317.04900669.81710-1.0791014.7732012.52790HepG2FASTKD2
SRCRB4DENSG00000146700.8353.57180676.27890-0.935607.984106.75280HepG2FIP1L1
SRCRB4DENSG00000146700.8618.47470396.833700.640104.286902.73440HepG2FKBP4
SRCRB4DENSG00000146700.8387.75440919.61030-1.2459022.0240019.91410HepG2FUBP3
SRCRB4DENSG00000146700.8579.903001160.36470-1.0007012.7370011.36300HepG2G3BP1
SRCRB4DENSG00000146700.8823.35180432.920900.9273010.819409.12450HepG2GEMIN5
SRCRB4DENSG00000146700.81218.78910319.930601.9295031.3123029.44020HepG2GPKOW
SRCRB4DENSG00000146700.8407.62380692.18280-0.763904.903002.89220HepG2GTF2F1
SRCRB4DENSG00000146700.81823.59090446.206802.0309033.1513031.38690HepG2HNRNPA1
SRCRB4DENSG00000146700.8526.852801175.39330-1.1577019.0106017.33090HepG2HNRNPK
SRCRB4DENSG00000146700.8324.72820493.06040-0.602505.928605.06920HepG2HNRNPU
SRCRB4DENSG00000146700.8492.72970389.332600.339702.109401.47050HepG2IGF2BP1
SRCRB4DENSG00000146700.8360.117301179.42150-1.7115034.3046032.24090HepG2IGF2BP2
SRCRB4DENSG00000146700.8230.033901107.09330-2.2669016.9630014.79640HepG2IGF2BP3
SRCRB4DENSG00000146700.8309.81180503.64130-0.701008.795207.56130HepG2ILF2
SRCRB4DENSG00000146700.8740.33670456.555000.697305.239203.52700HepG2KHDRBS1
SRCRB4DENSG00000146700.8875.18280663.830500.398704.915803.56220HepG2KIF1C
SRCRB4DENSG00000146700.81101.13500738.463100.576304.030103.02500HepG2LARP4
SRCRB4DENSG00000146700.8387.40280585.81840-0.596605.062903.53340HepG2LARP7
SRCRB4DENSG00000146700.8359.36390587.61150-0.709405.527303.17710HepG2LSM11
SRCRB4DENSG00000146700.8517.927901251.50100-1.2728020.4314018.73320HepG2MAGOH
SRCRB4DENSG00000146700.8342.93440508.86350-0.569302.413201.42860HepG2METAP2
SRCRB4DENSG00000146700.8459.75610735.23680-0.677308.224006.93200HepG2NOL12
SRCRB4DENSG00000146700.8961.00110437.929001.133707.709905.86970HepG2NONO
SRCRB4DENSG00000146700.8460.16380270.744700.765105.535804.49610HepG2NSUN2
SRCRB4DENSG00000146700.8637.668401146.88390-0.846809.784308.44650HepG2PABPC4
SRCRB4DENSG00000146700.8553.272401170.10770-1.0806023.8331022.34720HepG2PCBP1
SRCRB4DENSG00000146700.8760.29670439.766800.7897011.7585010.30020HepG2PPIL4
SRCRB4DENSG00000146700.8499.259401190.56370-1.2538022.7267021.44620HepG2PTBP1
SRCRB4DENSG00000146700.81265.28430701.843300.8501013.2121012.03930HepG2PUF60
SRCRB4DENSG00000146700.8402.04820745.03230-0.8899016.9912015.78010HepG2PUM1
SRCRB4DENSG00000146700.8573.23050739.71810-0.367903.617502.93270HepG2PUS1
SRCRB4DENSG00000146700.8434.704101289.54770-1.5688037.5730035.72140HepG2QKI
SRCRB4DENSG00000146700.8161.32030670.60870-2.0555021.0764019.30420HepG2RAVER1
SRCRB4DENSG00000146700.8433.37160200.025601.115308.700005.60210HepG2RBM14
SRCRB4DENSG00000146700.8442.88150673.43830-0.604605.066003.94990HepG2RBM15
SRCRB4DENSG00000146700.8611.55380839.57420-0.457204.753204.12030HepG2RBM22
SRCRB4DENSG00000146700.8593.719001170.29530-0.9790012.8023011.41360HepG2RBM25
SRCRB4DENSG00000146700.8507.53090706.41550-0.477003.382002.27920HepG2RBM27
SRCRB4DENSG00000146700.81303.59180573.641901.1842015.9576013.52410HepG2RCC2
SRCRB4DENSG00000146700.81063.626601325.03680-0.317003.079702.51510HepG2NELFE
SRCRB4DENSG00000146700.8227.97440425.85000-0.901507.246906.21910HepG2RPLP0
SRCRB4DENSG00000146700.8410.18560658.97480-0.683904.043102.90520HepG2RPS10
SRCRB4DENSG00000146700.8471.49930665.04380-0.496203.762002.49790HepG2RPS5
SRCRB4DENSG00000146700.8108.98310363.71320-1.7387017.1288015.47680HepG2RRP9
SRCRB4DENSG00000146700.8320.71910729.89460-1.1864010.218607.48290HepG2RTF1
SRCRB4DENSG00000146700.8276.66040439.07980-0.666406.522905.59620HepG2SAFB2
SRCRB4DENSG00000146700.8764.20660254.485601.586303.224601.72860HepG2SF1
SRCRB4DENSG00000146700.81003.30540647.815000.631004.392803.53300HepG2SF3A3
SRCRB4DENSG00000146700.8190.98430302.18770-0.662003.688202.88400HepG2SF3B1
SRCRB4DENSG00000146700.8506.720701239.64640-1.2907023.2951021.86170HepG2SF3B4
SRCRB4DENSG00000146700.81241.00710672.947400.8828023.5957021.94980HepG2SLBP
SRCRB4DENSG00000146700.8293.46560684.45060-1.2218012.4742010.37370HepG2SMNDC1
SRCRB4DENSG00000146700.8172.98620336.24300-0.958805.053403.98750HepG2SNRNP70
SRCRB4DENSG00000146700.8204.66750948.26270-2.2120077.9307076.21190HepG2SRFBP1
SRCRB4DENSG00000146700.8466.970101293.87520-1.4703033.2390031.99730HepG2SRSF1
SRCRB4DENSG00000146700.8544.93370692.96160-0.346702.898502.25830HepG2SRSF5
SRCRB4DENSG00000146700.8511.853901052.59560-1.0401020.7977019.54190HepG2SRSF9
SRCRB4DENSG00000146700.81609.07240823.306800.9666029.7183028.44740HepG2SSB
SRCRB4DENSG00000146700.8150.09450451.61610-1.5892011.275209.00380HepG2STAU1
SRCRB4DENSG00000146700.8522.97740788.09380-0.591608.173807.20070HepG2SUCLG1
SRCRB4DENSG00000146700.8286.59900456.56850-0.671805.491504.19180HepG2SUPT6H
SRCRB4DENSG00000146700.8598.256101162.85410-0.9588016.3245015.12650HepG2TAF15
SRCRB4DENSG00000146700.8516.31900297.669700.794506.723105.65960HepG2TARDBP
SRCRB4DENSG00000146700.8316.34440523.79850-0.727503.002201.89150HepG2TBRG4
SRCRB4DENSG00000146700.8851.580601068.64390-0.327602.812101.96980HepG2TIA1
SRCRB4DENSG00000146700.8133.73390578.45460-2.1128034.8291032.53960HepG2U2AF1
SRCRB4DENSG00000146700.8486.53150725.75720-0.577003.642102.67460HepG2UBE2L3
SRCRB4DENSG00000146700.8181.81500280.34250-0.624703.439102.59760HepG2UCHL5
SRCRB4DENSG00000146700.8921.22820574.514400.6811011.8100010.54940HepG2UPF1
SRCRB4DENSG00000146700.8678.30660434.507400.642503.339102.23140HepG2UPF2
SRCRB4DENSG00000146700.8345.96420659.66540-0.931106.420304.51350HepG2XRCC5
SRCRB4DENSG00000146700.8409.70940737.61620-0.848306.463604.89240HepG2XRCC6
SRCRB4DENSG00000146700.82001.64150467.200202.0990054.5940051.81490HepG2XRN2
SRCRB4DENSG00000146700.8232.93790472.09040-1.0191014.0720012.75060HepG2ZC3H8
SRCRB4DENSG00000146700.8478.48280631.85370-0.401103.971003.34780HepG2ZNF622
SRCRB4DENSG00000146700.854.2671010.044802.433506.817505.76250K562EIF2S2
SRCRB4DENSG00000146700.857.124406.875303.054508.242706.86640K562GPKOW
SRCRB4DENSG00000146700.882.1713010.240203.0043011.2081010.07500K562HNRNPC
SRCRB4DENSG00000146700.839.0780017.710901.141602.026401.32080K562SF3A3
SRCRB4DENSG00000146700.867.5207019.014401.828105.896204.89180K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SRCRB4D is not available on ENCORE database.





5 RBPs can affect the splicing of SRCRB4D :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESRCRB4DENSG00000146700.8chr7-760296027602990876028036760281147603032476030360-0.246000.002010.04749excludedHepG2HNRNPK
SESRCRB4DENSG00000146700.8chr7-7602960276029908760280367602811476033623760338220.328000.000280.01094includedHepG2SF3A3
SESRCRB4DENSG00000146700.8chr7-7603032476030360760280367602811476033623760338220.506000.000530.05250includedHepG2SUPV3L1
SESRCRB4DENSG00000146700.8chr7-760336237603382276028036760281147603873076039012-0.222000.000390.02095excludedHepG2HNRNPU
MXESRCRB4DENSG00000146700.8chr7-76028036760281147602960276029908760268347602714976030324760303600.163000.005590.089731includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SRCRB4D is not avaliable on ENCORE database.