SCOC

General Information

Gene Name       : SCOC
Gene ID             : ENSG00000153130.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCOC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCOCENSG00000153130.1752.1138.9145.51ENCSR000AEF
HepG2SCOCENSG00000153130.1723.3271.6547.48ENCSR985KAT
K562SCOCENSG00000153130.1725.3331.4328.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCOC is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCOC RNA is bound by 7 proteins.  







eCLIP assay for SCOC is not avaliable on ENCORE database.





7 proteins are bound to SCOC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4141300298141300347+3'-UTR,CDS,intron-Proximal3.699918.21085K562DDX3X
chr4141303141141303272+3'-UTR3.410908.55824K562UPF1
chr4141303547141303611+3'-UTR4.401507.77386HepG2FUBP3
chr4141303002141303073+3'-UTR4.092605.53175K562FAM120A
chr4141300274141300298+3'-UTR,CDS,intron-Proximal5.3433510.95413K562DDX3X
chr4141302544141302613+3'-UTR4.2347914.92296HepG2FUBP3
chr4141300268141300300+3'-UTR,CDS,intron-Proximal4.120753.19863HepG2EIF3D
chr4141302464141302544+3'-UTR5.4826317.11424HepG2FUBP3
chr4141302526141302582+3'-UTR3.966143.71735K562TIA1
chr4141294806141294874+5'-UTR,CDS,intron-Distal,intron-Proximal7.0488320.44642K562DDX3X
chr4141294792141294871+5'-UTR,CDS,intron-Distal,intron-Proximal4.058399.39478HepG2DDX3X
chr4141302115141302163+CDS,intron-Proximal3.546515.73361K562YBX3
chr4141300764141300807+CDS,intron-Distal,intron-Proximal3.634045.37252K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCOC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCOC is not available on ENCORE database.

  • 110 RBPs can affect the levels of SCOC.  








The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.





110 RBPs can affect the gene expression of SCOC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCOCENSG00000153130.131409.381201745.59070-0.308704.418603.68550HepG2ACO1
SCOCENSG00000153130.133472.461204900.43570-0.497001.925101.47210HepG2AKAP1
SCOCENSG00000153130.131307.887201753.94940-0.423406.094304.99620HepG2AKAP8L
SCOCENSG00000153130.131211.151301750.53420-0.531402.492101.60540HepG2BCCIP
SCOCENSG00000153130.132099.765501521.294000.464802.700401.81130HepG2BCLAF1
SCOCENSG00000153130.131290.24550934.577000.465205.222904.20400HepG2CALR
SCOCENSG00000153130.131178.207301745.40070-0.5670012.2525011.05380HepG2CKAP4
SCOCENSG00000153130.132153.564602467.04910-0.196102.096001.52360HepG2CELF1
SCOCENSG00000153130.132034.329802653.02640-0.383109.118607.89570HepG2DAZAP1
SCOCENSG00000153130.131934.319301489.808600.376602.308801.68120HepG2DDX21
SCOCENSG00000153130.131071.260301456.92470-0.443603.273902.27760HepG2DDX24
SCOCENSG00000153130.132543.732604031.67560-0.664403.310302.64140HepG2DDX6
SCOCENSG00000153130.131919.969503876.96540-1.013805.793904.95380HepG2EIF2S1
SCOCENSG00000153130.13692.75320911.57420-0.396003.062701.82710HepG2EIF2S2
SCOCENSG00000153130.132415.627504285.09160-0.826904.344103.54670HepG2EIF4A3
SCOCENSG00000153130.132920.306304171.01360-0.514302.226701.60600HepG2EIF4B
SCOCENSG00000153130.131547.939602617.07800-0.7576023.6246021.69200HepG2EIF4G1
SCOCENSG00000153130.131871.101801432.634600.385103.025101.69870HepG2FKBP4
SCOCENSG00000153130.132186.437604321.69530-0.983006.018005.02410HepG2FXR1
SCOCENSG00000153130.132222.775204009.94380-0.851204.766303.90380HepG2G3BP1
SCOCENSG00000153130.132234.716304255.84420-0.929405.654804.37010HepG2G3BP2
SCOCENSG00000153130.13593.58440832.51730-0.488003.737002.68120HepG2GEMIN5
SCOCENSG00000153130.132995.209302438.041800.296804.121403.01550HepG2HNRNPA2B1
SCOCENSG00000153130.131002.966501426.23570-0.507903.154802.42020HepG2HNRNPC
SCOCENSG00000153130.132104.355704058.24220-0.947506.213505.19580HepG2HNRNPK
SCOCENSG00000153130.131875.855302416.80800-0.365608.269107.16030HepG2HNRNPL
SCOCENSG00000153130.13920.44380698.254000.398502.707902.08400HepG2HNRNPLL
SCOCENSG00000153130.13914.340901416.81100-0.631805.297504.48000HepG2HNRNPU
SCOCENSG00000153130.132171.621404076.35380-0.908505.021004.13590HepG2IGF2BP2
SCOCENSG00000153130.131012.967201447.23660-0.514704.571703.64860HepG2ILF2
SCOCENSG00000153130.132019.109704099.49150-1.021705.541404.07230HepG2KHSRP
SCOCENSG00000153130.131212.770901595.80660-0.396007.125105.54140HepG2KIF1C
SCOCENSG00000153130.132492.964804323.19610-0.794204.519703.68610HepG2MAGOH
SCOCENSG00000153130.132625.844504347.68250-0.727503.952903.21090HepG2MATR3
SCOCENSG00000153130.13656.92030978.59680-0.575002.647901.61750HepG2METAP2
SCOCENSG00000153130.131165.53380712.010600.710904.828703.52560HepG2MTPAP
SCOCENSG00000153130.132677.157704450.33050-0.733203.910503.16150HepG2NCBP2
SCOCENSG00000153130.131963.198201590.217700.303902.729001.32430HepG2NIP7
SCOCENSG00000153130.132256.606002630.71720-0.221302.298601.60330HepG2NOL12
SCOCENSG00000153130.131811.973003964.39240-1.129506.682105.56860HepG2PABPC4
SCOCENSG00000153130.13964.988501402.48090-0.539405.630204.48110HepG2PARN
SCOCENSG00000153130.132202.728803484.91650-0.6618012.8022011.64930HepG2PCBP1
SCOCENSG00000153130.131683.056501328.244000.341502.371301.62050HepG2PRPF8
SCOCENSG00000153130.132152.138503545.85520-0.7204015.6204014.52310HepG2PTBP1
SCOCENSG00000153130.133260.779402511.154600.376803.510602.84950HepG2PUF60
SCOCENSG00000153130.131940.393302665.59000-0.458107.627106.74390HepG2PUM1
SCOCENSG00000153130.131702.274002663.71220-0.6460013.0371011.64690HepG2PUM2
SCOCENSG00000153130.132047.007601778.025100.203102.358301.77840HepG2PUS1
SCOCENSG00000153130.132954.896603840.62750-0.378204.423603.65990HepG2QKI
SCOCENSG00000153130.13632.457501352.74950-1.096903.426401.38800HepG2RBM17
SCOCENSG00000153130.132835.302903485.47320-0.297901.899701.33150HepG2RBM25
SCOCENSG00000153130.131547.574502120.49880-0.454402.897901.88130HepG2RBM27
SCOCENSG00000153130.13574.786901187.64260-1.047003.399901.57160HepG2RBM39
SCOCENSG00000153130.13841.103701763.53020-1.068103.676101.91570HepG2RBM47
SCOCENSG00000153130.131679.357803946.34400-1.2326031.1425029.74600HepG2NELFE
SCOCENSG00000153130.132377.558603675.21530-0.628309.999108.94060HepG2RECQL
SCOCENSG00000153130.13538.55890909.78340-0.756409.479408.42310HepG2RPS19
SCOCENSG00000153130.13593.34860913.14980-0.622005.493104.17990HepG2SERBP1
SCOCENSG00000153130.13928.91920691.164600.426403.351902.58250HepG2SF3B1
SCOCENSG00000153130.132648.385303692.01160-0.479308.001007.07770HepG2SF3B4
SCOCENSG00000153130.131936.807302407.57680-0.313906.091705.11450HepG2SLBP
SCOCENSG00000153130.13871.849101471.50200-0.755109.093808.03550HepG2SMN1
SCOCENSG00000153130.13508.182601168.05800-1.200704.851602.98870HepG2SNRNP200
SCOCENSG00000153130.131194.44140769.030600.635104.066203.10960HepG2SNRNP70
SCOCENSG00000153130.132529.082603000.06380-0.246402.011101.56330HepG2SRFBP1
SCOCENSG00000153130.133206.218803853.53070-0.265302.540402.08240HepG2SRSF1
SCOCENSG00000153130.132087.768202479.26570-0.248003.416102.73290HepG2SRSF5
SCOCENSG00000153130.131992.680803134.94050-0.6537011.3715010.38700HepG2SRSF9
SCOCENSG00000153130.132089.085301528.729100.450402.605501.44200HepG2SUB1
SCOCENSG00000153130.131904.385502819.72260-0.5662015.7916014.50290HepG2SUCLG1
SCOCENSG00000153130.132749.902301713.432100.682408.835807.73870HepG2SUPV3L1
SCOCENSG00000153130.131858.528903182.72310-0.7761014.6840012.79500HepG2TIA1
SCOCENSG00000153130.13867.706201376.93820-0.666204.244203.65290HepG2TIAL1
SCOCENSG00000153130.13811.177901388.98770-0.7759010.034009.06270HepG2TRIM56
SCOCENSG00000153130.13503.391701358.80040-1.432605.695704.23440HepG2U2AF2
SCOCENSG00000153130.132076.200302596.45810-0.322602.403101.62680HepG2UBE2L3
SCOCENSG00000153130.13328.805601012.29830-1.6223014.2451012.55580HepG2UCHL5
SCOCENSG00000153130.13473.542901065.02900-1.1693012.8056011.65850HepG2UTP3
SCOCENSG00000153130.13790.11530641.179500.301202.738102.06910HepG2ZC3H8
SCOCENSG00000153130.131191.75430864.344900.463306.426505.61370K562AGGF1
SCOCENSG00000153130.131216.13220949.778100.356502.885301.87530K562AKAP8
SCOCENSG00000153130.131175.83440899.388500.386603.226902.52010K562AKAP8L
SCOCENSG00000153130.131246.523801921.68030-0.624508.655106.38770K562APOBEC3C
SCOCENSG00000153130.131522.602702288.58200-0.587907.095106.22590K562AQR
SCOCENSG00000153130.13137.37300306.10560-1.155903.401402.20690K562CCAR1
SCOCENSG00000153130.13792.214301133.93460-0.517405.532703.92300K562CPEB4
SCOCENSG00000153130.13366.48980579.94050-0.662106.183905.01240K562CPSF6
SCOCENSG00000153130.13863.795201223.73820-0.502506.781004.05090K562DDX24
SCOCENSG00000153130.13669.38910993.21360-0.569304.476402.35120K562DDX51
SCOCENSG00000153130.131267.53490967.816100.389103.496002.49460K562DKC1
SCOCENSG00000153130.13720.03750919.86040-0.353302.141601.33780K562EFTUD2
SCOCENSG00000153130.131020.348701268.65810-0.314203.346302.00500K562EIF2S1
SCOCENSG00000153130.13818.051601205.44040-0.559308.308507.16250K562EIF2S2
SCOCENSG00000153130.13948.201201168.24000-0.301102.008101.32100K562EIF3G
SCOCENSG00000153130.13712.054201206.63030-0.760907.348406.01660K562EIF4A3
SCOCENSG00000153130.13804.317001086.66710-0.434103.638202.28100K562EIF4B
SCOCENSG00000153130.131774.645902177.87130-0.295403.449602.40350K562EIF4G2
SCOCENSG00000153130.13991.125701254.85030-0.340403.516202.84630K562FXR1
SCOCENSG00000153130.13310.41680688.96850-1.1502015.9713014.61520K562HNRNPC
SCOCENSG00000153130.13388.45370615.15760-0.663204.307502.84640K562HNRNPF
SCOCENSG00000153130.13784.945301060.26420-0.433804.002602.70480K562HNRNPL
SCOCENSG00000153130.131245.10860918.067100.439503.775602.85050K562HSPD1
SCOCENSG00000153130.13489.20160698.57500-0.514003.670301.92720K562LIN28B
SCOCENSG00000153130.131385.550501891.86090-0.449304.471303.39650K562MAGOH
SCOCENSG00000153130.131523.713501888.13490-0.309402.706701.79550K562MATR3
SCOCENSG00000153130.131407.850501069.259500.396803.795702.70170K562MBNL1
SCOCENSG00000153130.131543.719902321.35830-0.588607.632705.81170K562MSI2
SCOCENSG00000153130.13639.22520845.23510-0.403004.820303.87340K562NSUN2
SCOCENSG00000153130.131261.932901683.42220-0.415802.723101.75130K562PCBP2
SCOCENSG00000153130.13438.29150672.57630-0.617805.493903.40980K562PHF6
SCOCENSG00000153130.131774.312502237.84220-0.334803.679602.03240K562PNPT1
SCOCENSG00000153130.13377.81120617.70680-0.709305.193503.90220K562PSIP1
SCOCENSG00000153130.131437.325701838.00630-0.354803.645802.89470K562PTBP1
SCOCENSG00000153130.132028.510902476.39620-0.287803.636402.53520K562PUM2
SCOCENSG00000153130.132004.41590891.957701.1680018.8118017.42800K562PUS1
SCOCENSG00000153130.131382.72830869.069200.6699011.3025010.12350K562RBM15
SCOCENSG00000153130.131095.224901762.83100-0.686706.877305.48210K562RBM22
SCOCENSG00000153130.13422.30880563.45390-0.416002.633301.66770K562RCC2
SCOCENSG00000153130.131304.330901855.00350-0.508105.128003.57860K562NELFE
SCOCENSG00000153130.13348.02860534.15200-0.618004.514103.11540K562SRFBP1
SCOCENSG00000153130.131283.668401801.77630-0.489106.104005.06140K562SRSF1
SCOCENSG00000153130.13334.40910549.29880-0.716006.181904.49740K562SRSF4
SCOCENSG00000153130.131269.582301701.43730-0.422403.958902.66490K562SRSF5
SCOCENSG00000153130.131558.454502073.23740-0.411805.262803.26470K562SUCLG1
SCOCENSG00000153130.13981.606501823.69330-0.893609.863708.39660K562TARDBP
SCOCENSG00000153130.131066.325901759.11130-0.722209.789808.13400K562TIA1
SCOCENSG00000153130.13372.55170594.14560-0.673405.025003.73090K562TIAL1
SCOCENSG00000153130.131398.224101725.78960-0.303702.394501.39350K562TRA2A
SCOCENSG00000153130.13387.31170631.06510-0.704306.208804.66410K562TRIM56
SCOCENSG00000153130.132039.276702679.27590-0.393803.277101.73800K562UBE2L3
SCOCENSG00000153130.13347.76050917.40150-1.3995015.9696013.52310K562UCHL5
SCOCENSG00000153130.13715.58550896.22170-0.324703.073302.31780K562UPF1
SCOCENSG00000153130.13601.41280766.86690-0.350602.543401.70070K562WDR3
SCOCENSG00000153130.13676.09030933.98320-0.466203.335101.96930K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.





10 RBPs can affect the splicing of SCOC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.470000.000000.00000excludedK562SRSF1
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.095000.000740.02985excludedK562PRPF8
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.089000.000000.00067excludedHepG2RBM22
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.201000.000720.01064excludedHepG2U2AF2
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.129000.000000.00008excludedK562PUS1
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.139000.000000.00003excludedK562U2AF1
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.441000.000000.00000excludedHepG2SRSF1
SESCOCENSG00000153130.13chr4+1413007221413008061413002741413003461413021151413068800.066000.000010.00205includedHepG2SUPV3L1
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.106000.000040.00121excludedK562U2AF2
SESCOCENSG00000153130.13chr4+1413007221413008061413002741413003461413021151413068800.077000.000760.03446includedHepG2HNRNPU
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.079000.000080.02136excludedK562EIF3G
SESCOCENSG00000153130.13chr4+141300722141300806141300274141300346141302115141306880-0.053000.002770.08620excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCOC is not avaliable on ENCORE database.