SCN1B

General Information

Gene Name       : SCN1B
Gene ID             : ENSG00000105711.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCN1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCN1BENSG00000105711.110.390.090.24ENCSR000AEF
HepG2SCN1BENSG00000105711.115.483.624.55ENCSR985KAT
K562SCN1BENSG00000105711.110.740.530.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCN1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCN1B RNA is bound by 3 proteins.  







eCLIP assay for SCN1B is not avaliable on ENCORE database.





3 proteins are bound to SCN1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193553096635531025+3'-UTR4.225324.50934HepG2RBFOX2
chr193553082435530939+3'-UTR4.835345.83981HepG2RBFOX2
chr193552441735524660+CDS,intron-Distal,intron-Proximal4.331374.04622HepG2GRWD1
chr193552194135522011+intron-Distal3.771013.05512HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCN1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCN1B is not available on ENCORE database.

  • 104 RBPs can affect the levels of SCN1B.  








The Knockdown/knockout RNA-Seq assay for SCN1B is not available on ENCORE database.





104 RBPs can affect the gene expression of SCN1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCN1BENSG00000105711.650.89840213.34490-2.067508.743207.20990HepG2ABCF1
SCN1BENSG00000105711.6310.93020206.853500.587904.106003.39290HepG2ACO1
SCN1BENSG00000105711.6307.97940207.828100.567303.717802.84150HepG2AKAP8L
SCN1BENSG00000105711.6201.45620126.532100.670902.563601.80570HepG2ASCC1
SCN1BENSG00000105711.6412.31980201.444601.033308.190207.11220HepG2AUH
SCN1BENSG00000105711.6406.08590159.738101.3460011.859409.49240HepG2BUD13
SCN1BENSG00000105711.682.59210174.56800-1.079703.174302.35200HepG2CNOT7
SCN1BENSG00000105711.6410.06460175.562201.2238011.592009.51330HepG2CPSF7
SCN1BENSG00000105711.6425.96060215.760400.9812010.499309.40330HepG2CELF1
SCN1BENSG00000105711.692.81290191.31140-1.043507.530606.26790HepG2DDX19B
SCN1BENSG00000105711.6214.64890105.960701.018306.410804.72840HepG2DDX1
SCN1BENSG00000105711.615.24870164.21000-3.4288027.0246025.22630HepG2DDX21
SCN1BENSG00000105711.641.58860160.89150-1.9518012.5644010.67930HepG2DDX24
SCN1BENSG00000105711.6560.31490146.472701.935507.298706.32680HepG2DDX3X
SCN1BENSG00000105711.6274.0253098.262401.479503.954503.04600HepG2DDX55
SCN1BENSG00000105711.6820.81760125.911402.7046051.6254049.46630HepG2DDX6
SCN1BENSG00000105711.6224.42290100.211801.163108.020706.44090HepG2DHX30
SCN1BENSG00000105711.626.26970197.90360-2.9133027.5125025.93030HepG2DKC1
SCN1BENSG00000105711.651.77180147.60360-1.511507.364705.94170HepG2EEF2
SCN1BENSG00000105711.6277.38050151.381600.873604.829103.36220HepG2AGO1
SCN1BENSG00000105711.6579.06560120.954002.2592035.7738033.80200HepG2EIF2S1
SCN1BENSG00000105711.653.00960155.20280-1.549809.275507.53180HepG2EIF3G
SCN1BENSG00000105711.6111.62270228.87230-1.035906.790105.58260HepG2EIF4G1
SCN1BENSG00000105711.645.90530184.72630-2.0087010.543908.62120HepG2ESF1
SCN1BENSG00000105711.6129.96410202.13570-0.637202.971202.10880HepG2EWSR1
SCN1BENSG00000105711.6202.2686083.387401.278307.659306.38830HepG2FUBP3
SCN1BENSG00000105711.6216.62320134.951400.682602.699302.01630HepG2FXR1
SCN1BENSG00000105711.6290.18920125.119701.213608.806007.65500HepG2G3BP1
SCN1BENSG00000105711.634.17230106.66440-1.642206.654405.26580HepG2GEMIN5
SCN1BENSG00000105711.6239.77260125.624900.932405.074903.68990HepG2GNB2L1
SCN1BENSG00000105711.6403.63120197.487901.0312012.9487011.08130HepG2HDGF
SCN1BENSG00000105711.611.28040104.89680-3.2171014.9194013.61330HepG2HNRNPA1
SCN1BENSG00000105711.6444.92570213.191601.0613010.384008.78710HepG2HNRNPA2B1
SCN1BENSG00000105711.6228.59120144.310200.663502.893101.46010HepG2HNRNPAB
SCN1BENSG00000105711.6342.91780126.852701.4346012.7985011.40620HepG2HNRNPK
SCN1BENSG00000105711.6159.46980268.71790-0.752803.816202.36960HepG2HSPD1
SCN1BENSG00000105711.6281.80140127.157401.148007.818406.74300HepG2IGF2BP2
SCN1BENSG00000105711.6515.57970127.943502.010605.851304.34460HepG2KHSRP
SCN1BENSG00000105711.6297.25340189.092100.652504.822703.48200HepG2KIF1C
SCN1BENSG00000105711.6152.12930268.54570-0.819904.073002.54680HepG2KRR1
SCN1BENSG00000105711.662.05030129.22660-1.058404.171302.68000HepG2LIN28B
SCN1BENSG00000105711.649.86260134.99910-1.436903.086502.39370HepG2MAGOH
SCN1BENSG00000105711.6275.65040146.313600.913705.916804.15290HepG2NAA15
SCN1BENSG00000105711.6278.24920138.914101.002103.571102.85540HepG2NCBP2
SCN1BENSG00000105711.6427.35310159.613701.4207010.404708.65150HepG2PABPC1
SCN1BENSG00000105711.6325.50750123.634001.396506.976805.83690HepG2PABPC4
SCN1BENSG00000105711.6210.39720121.589000.791004.716703.95940HepG2PCBP1
SCN1BENSG00000105711.6316.33190196.716600.685204.305102.16640HepG2PES1
SCN1BENSG00000105711.6219.67700103.378701.087307.424106.25930HepG2PPIL4
SCN1BENSG00000105711.672.37620151.49940-1.065704.224902.73400HepG2PRPF6
SCN1BENSG00000105711.628.5086075.71160-1.409103.136402.28160HepG2PRPF8
SCN1BENSG00000105711.6148.26230219.57260-0.566502.304201.75320HepG2PUF60
SCN1BENSG00000105711.6159.17740233.09990-0.550302.763002.17040HepG2PUM1
SCN1BENSG00000105711.6100.50420210.69420-1.067907.849806.90020HepG2PUS1
SCN1BENSG00000105711.6414.31470133.982401.6286021.4386019.94020HepG2QKI
SCN1BENSG00000105711.6407.12670261.094700.640804.796703.70620HepG2RBM15
SCN1BENSG00000105711.689.09390193.31190-1.117506.558205.84170HepG2RBM22
SCN1BENSG00000105711.6492.79060121.606002.018709.881208.66360HepG2RBM25
SCN1BENSG00000105711.653.89110137.69290-1.353306.290605.53010HepG2NELFE
SCN1BENSG00000105711.680.34850128.25780-0.674702.160401.60670HepG2RECQL
SCN1BENSG00000105711.660.97730149.54360-1.294206.523905.53800HepG2RPLP0
SCN1BENSG00000105711.641.37980116.59190-1.494506.710005.79900HepG2RPS19
SCN1BENSG00000105711.648.66260136.87610-1.492007.088005.84680HepG2RPS2
SCN1BENSG00000105711.697.46290175.47230-0.848302.456601.70140HepG2RPS3A
SCN1BENSG00000105711.6154.3700074.885601.043503.315402.46430HepG2RRP9
SCN1BENSG00000105711.678.56190151.30070-0.945503.488601.77260HepG2RTF1
SCN1BENSG00000105711.6198.23930103.219900.941405.930705.04270HepG2SAFB2
SCN1BENSG00000105711.6114.27880193.78780-0.761902.767302.09290HepG2SF3A3
SCN1BENSG00000105711.6329.83440128.802101.356509.760108.74920HepG2SF3B4
SCN1BENSG00000105711.6309.93540210.564500.557603.993103.17320HepG2SLBP
SCN1BENSG00000105711.6182.77940120.373300.602502.866402.21280HepG2SMN1
SCN1BENSG00000105711.670.92630141.79300-0.999404.097002.91240HepG2SMNDC1
SCN1BENSG00000105711.6281.62990218.338600.367101.811501.38010HepG2SRFBP1
SCN1BENSG00000105711.624.45760134.44910-2.4587014.4800013.57880HepG2SRSF1
SCN1BENSG00000105711.6408.58050109.388001.9011033.7550032.24140HepG2SRSF9
SCN1BENSG00000105711.64.28770189.56950-5.4664048.0184046.52570HepG2SSB
SCN1BENSG00000105711.6181.59110267.82670-0.560602.545401.31390HepG2SSRP1
SCN1BENSG00000105711.6238.28520129.967900.874403.405502.06330HepG2SUB1
SCN1BENSG00000105711.669.90440120.86910-0.790002.620202.07310HepG2TAF15
SCN1BENSG00000105711.673.12200263.06320-1.8470010.669708.74870HepG2TBRG4
SCN1BENSG00000105711.6197.9026065.531101.594409.220907.61670HepG2TFIP11
SCN1BENSG00000105711.6210.60370111.039900.923405.725604.53560HepG2TIA1
SCN1BENSG00000105711.6210.00450112.629600.898705.168304.52890HepG2TIAL1
SCN1BENSG00000105711.6295.84120113.630201.3804015.6340014.44620HepG2TRIM56
SCN1BENSG00000105711.6111.69160184.19190-0.721702.623702.01080HepG2U2AF1
SCN1BENSG00000105711.6411.89590227.097900.858905.409704.22010HepG2UBE2L3
SCN1BENSG00000105711.6188.2413057.751301.704605.212904.16330HepG2UCHL5
SCN1BENSG00000105711.664.25600165.92380-1.368608.127707.18880HepG2UTP3
SCN1BENSG00000105711.6283.46520157.180900.850604.725003.27770HepG2XPO5
SCN1BENSG00000105711.629.9175096.26690-1.686103.478802.67130HepG2XRN2
SCN1BENSG00000105711.666.68140113.73010-0.770302.718702.05250HepG2ZC3H8
SCN1BENSG00000105711.6177.0421055.597401.6709011.6241010.55480K562AGGF1
SCN1BENSG00000105711.6218.7448057.850801.9187016.4553014.62300K562AKAP8L
SCN1BENSG00000105711.629.350609.592401.613302.058001.31190K562BOP1
SCN1BENSG00000105711.638.1846010.200901.904203.333202.47010K562CPSF6
SCN1BENSG00000105711.642.9906014.795601.538802.842401.77200K562CSTF2
SCN1BENSG00000105711.636.655508.793802.059403.736802.66090K562FTO
SCN1BENSG00000105711.614.9899047.81900-1.673603.632902.95420K562FXR1
SCN1BENSG00000105711.630.132809.740501.629202.181201.47440K562GPKOW
SCN1BENSG00000105711.695.6779040.508801.239902.720801.51550K562HNRNPA2B1
SCN1BENSG00000105711.676.2742038.264000.995102.772601.87760K562HNRNPU
SCN1BENSG00000105711.6112.8375048.209401.226802.325901.53350K562NAA15
SCN1BENSG00000105711.682.6056045.370900.864402.373501.67800K562NSUN2
SCN1BENSG00000105711.661.0965018.363701.734104.241503.08640K562PSIP1
SCN1BENSG00000105711.613.7921034.72520-1.332102.313601.69930K562PTBP1
SCN1BENSG00000105711.6123.4217055.901401.142504.801504.04070K562RBM15
SCN1BENSG00000105711.690.8623032.369201.489003.345401.98850K562SF1
SCN1BENSG00000105711.6103.6278044.770501.210704.657103.62210K562SF3A3
SCN1BENSG00000105711.633.270509.259401.845102.680801.72110K562SF3B1
SCN1BENSG00000105711.669.6202027.846701.321903.965702.93560K562SF3B4
SCN1BENSG00000105711.642.6818017.662301.272902.180001.35950K562TIAL1
SCN1BENSG00000105711.687.9781026.822601.713606.890705.63180K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCN1B is not available on ENCORE database.






No RBPs affect the alternative splcing events of SCN1B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SCN1B is not avaliable on ENCORE database.