SCAF1

General Information

Gene Name       : SCAF1
Gene ID             : ENSG00000126461.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SCAF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCAF1ENSG00000126461.140.252.891.57ENCSR000AEF
HepG2SCAF1ENSG00000126461.1413.983.208.59ENCSR985KAT
K562SCAF1ENSG00000126461.1416.236.5111.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCAF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCAF1 RNA is bound by 28 proteins.  







eCLIP assay for SCAF1 is not avaliable on ENCORE database.





28 proteins are bound to SCAF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195016178050161878+3'-UTR3.344005.23117K562PCBP1
chr195016170050161761+3'-UTR4.450034.01795HepG2LARP4
chr195016177550161847+3'-UTR5.2966623.73869HepG2PCBP2
chr195016184750161883+3'-UTR5.9104629.69779HepG2PCBP2
chr195016177450161882+3'-UTR4.6179119.29669HepG2HNRNPK
chr195016180250161889+3'-UTR3.174107.99238K562ILF3
chr195016170750161749+3'-UTR3.192589.16632K562PABPC4
chr195016180150161886+3'-UTR5.3128916.12076HepG2DDX59
chr195016181850161883+3'-UTR3.006703.01032HepG2LARP4
chr195016179750161891+3'-UTR5.5616013.18076K562HNRNPK
chr195014820550148255+5'-UTR,intron-Proximal4.4278911.32600K562AQR
chr195014825550148281+5'-UTR,intron-Proximal3.699635.83621K562AQR
chr195014821750148305+5'-UTR,CDS,intron-Proximal4.6628110.03577HepG2AQR
chr195014549650145547+5'-UTR,intron-Proximal3.940995.05356HepG2PRPF8
chr195015416750154212+CDS4.237854.30417K562YBX3
chr195015786450157928+CDS,intron-Proximal3.099345.56719K562SF3B4
chr195015413350154174+CDS5.040256.17200HepG2PCBP2
chr195015415850154255+CDS3.348238.86280K562PCBP1
chr195014998350150080+CDS4.594536.93645K562PCBP1
chr195015592950156025+CDS3.975086.12909HepG2SLTM
chr195015429250154389+CDS4.9995022.59333HepG2DDX59
chr195015451250154567+CDS3.266924.62864K562ZNF622
chr195014998950150080+CDS4.092288.76119HepG2DDX59
chr195015677550156865+CDS3.467104.89070K562UCHL5
chr195015427750154416+CDS4.115068.41956K562HNRNPK
chr195015641850156469+CDS4.258644.16554HepG2PPIG
chr195015428850154321+CDS5.9052113.12736HepG2PCBP2
chr195014992250149992+CDS,intron-Proximal4.771677.61488HepG2EFTUD2
chr195014997150150084+CDS,intron-Proximal3.260986.19328K562ILF3
chr195015421850154268+CDS4.8500413.65381HepG2PCBP2
chr195015639950156466+CDS4.338574.54052K562MTPAP
chr195014983350149883+CDS4.167218.69525HepG2PPIG
chr195015002850150074+CDS3.664634.53936K562METAP2
chr195016104650161147+CDS,intron-Proximal3.912987.06029HepG2GRWD1
chr195015615350156191+CDS3.170813.17151K562UCHL5
chr195014838650148452+CDS,intron-Proximal3.635576.34662HepG2PRPF8
chr195015601250156048+CDS3.260963.44826K562METAP2
chr195016097350161022+CDS,intron-Proximal3.508713.75245K562BUD13
chr195015449250154555+CDS4.4188010.37996HepG2BUD13
chr195016107950161148+CDS,intron-Proximal3.598626.43326K562UCHL5
chr195015432150154375+CDS5.045418.88051HepG2PCBP2
chr195015445950154536+CDS3.807364.28265HepG2FXR2
chr195015003050150084+CDS3.712926.31999HepG2PCBP2
chr195015447950154560+CDS3.018397.34382K562UCHL5
chr195015638350156435+CDS3.946823.55849K562YWHAG
chr195015368750153766+intron-Distal5.365277.42650HepG2XPO5
chr195014950450149608+intron-Distal,intron-Proximal4.6761014.79653HepG2EFTUD2
chr195014555850145658+intron-Distal,intron-Proximal4.495624.58968K562PRPF8
chr195014950350149592+intron-Distal,intron-Proximal4.133443.86455HepG2GTF2F1
chr195014951050149585+intron-Distal,intron-Proximal3.310176.67352HepG2PRPF8
chr195014952850149605+intron-Distal,intron-Proximal3.015613.99588K562EFTUD2
chr195014951450149584+intron-Distal,intron-Proximal3.593954.98422K562PRPF8
chr195014921450149269+intron-Distal,intron-Proximal3.984243.18939HepG2RBFOX2
chr195014907850149132+intron-Distal3.726574.12529K562GTF2F1
chr195015715950157269+intron-Distal3.652703.15678K562AKAP8L
chr195014904450149120+intron-Distal4.136644.35952HepG2PRPF4
chr195014952850149593+intron-Distal,intron-Proximal4.176484.67299K562DDX24
chr195014905650149117+intron-Distal4.156574.43431HepG2RBFOX2
chr195014554350145602+intron-Distal,intron-Proximal3.874886.80869K562AQR
chr195015701750157112+intron-Distal,intron-Proximal4.725575.68078HepG2AQR
chr195015935950159427+intron-Distal4.849065.28062HepG2XPO5
chr195014948750149582+intron-Distal,intron-Proximal4.923377.66822HepG2PRPF4
chr195014549950145543+intron-Proximal5.603319.95272K562AQR
chr195014550150145593+intron-Proximal4.933097.23427HepG2AQR
chr195015813050158174+intron-Proximal4.895794.65563K562AQR
chr195014973050149778+intron-Proximal4.232513.25089HepG2AQR
chr195014866950148712+intron-Proximal4.623634.13847K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCAF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCAF1 is not available on ENCORE database.

  • 119 RBPs can affect the levels of SCAF1.  








The Knockdown/knockout RNA-Seq assay for SCAF1 is not available on ENCORE database.





119 RBPs can affect the gene expression of SCAF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCAF1ENSG00000126461.101122.89720877.669400.355402.717302.11480HepG2ACO1
SCAF1ENSG00000126461.10913.13890629.671900.536101.957701.50140HepG2AKAP1
SCAF1ENSG00000126461.10572.07250330.584000.791103.015502.03310HepG2BCCIP
SCAF1ENSG00000126461.10394.44800567.23720-0.524103.965103.06580HepG2CALR
SCAF1ENSG00000126461.10461.21000277.040100.735203.017802.21590HepG2CNOT7
SCAF1ENSG00000126461.10519.41780380.736600.448003.515602.80920HepG2CELF1
SCAF1ENSG00000126461.10543.07350409.390200.407603.451002.64000HepG2DAZAP1
SCAF1ENSG00000126461.10900.59230603.041300.578502.661402.04640HepG2DDX3X
SCAF1ENSG00000126461.10637.51960325.071000.971603.741602.85790HepG2DDX55
SCAF1ENSG00000126461.10397.25720203.249600.966709.462808.22320HepG2DNAJC21
SCAF1ENSG00000126461.10435.67270201.462501.1126016.3995014.94070HepG2DNAJC2
SCAF1ENSG00000126461.10820.64200497.979900.720603.424202.76900HepG2EIF2S1
SCAF1ENSG00000126461.101119.34830853.144800.391703.124701.87720HepG2EIF2S2
SCAF1ENSG00000126461.10507.99120386.896100.392802.168201.44050HepG2EIF4G2
SCAF1ENSG00000126461.10488.18570323.345700.594302.782901.61060HepG2FAM120A
SCAF1ENSG00000126461.101018.51890555.568100.874303.989103.16770HepG2FXR1
SCAF1ENSG00000126461.10766.46050515.124700.573202.690402.03400HepG2G3BP1
SCAF1ENSG00000126461.10387.83650259.292100.580802.714201.70720HepG2GNB2L1
SCAF1ENSG00000126461.10332.27840205.196800.695302.051201.48500HepG2HNRNPA1
SCAF1ENSG00000126461.10395.64140229.138100.787903.145201.65120HepG2HNRNPAB
SCAF1ENSG00000126461.10908.15170644.029800.495706.827205.76910HepG2HNRNPF
SCAF1ENSG00000126461.10815.37370522.185100.642802.943902.22420HepG2HNRNPK
SCAF1ENSG00000126461.10648.35790372.924600.7978012.3299011.00060HepG2HNRNPL
SCAF1ENSG00000126461.10518.19330226.736901.1924019.2924017.80300HepG2HNRNPU
SCAF1ENSG00000126461.10870.09520634.193100.456204.812403.88250HepG2IGF2BP1
SCAF1ENSG00000126461.10823.15910523.525500.652803.495302.74520HepG2IGF2BP2
SCAF1ENSG00000126461.10453.03940231.603800.9679013.2891011.81350HepG2ILF2
SCAF1ENSG00000126461.10488.82730264.412200.886402.533101.40490HepG2KHDRBS1
SCAF1ENSG00000126461.101406.91070977.668000.525003.667602.71240HepG2LARP4
SCAF1ENSG00000126461.10383.76250254.103800.594703.314902.07350HepG2LARP7
SCAF1ENSG00000126461.101076.34080555.764100.953506.126105.15790HepG2MAGOH
SCAF1ENSG00000126461.10911.57340558.798600.705903.941003.20020HepG2MATR3
SCAF1ENSG00000126461.10592.19670771.76990-0.382103.030001.75970HepG2NAA15
SCAF1ENSG00000126461.101116.80040571.899500.965405.964905.05100HepG2NCBP2
SCAF1ENSG00000126461.10750.15190405.950200.885804.591603.60890HepG2NOL12
SCAF1ENSG00000126461.10624.42410292.488901.094006.832104.58540HepG2NOLC1
SCAF1ENSG00000126461.10782.87330298.692101.390008.499906.54280HepG2NONO
SCAF1ENSG00000126461.10507.01730253.350001.000803.203602.24420HepG2PABPC1
SCAF1ENSG00000126461.10322.73730224.427500.524003.343102.41990HepG2PARN
SCAF1ENSG00000126461.10850.08040488.881000.7980014.0375012.83960HepG2PCBP1
SCAF1ENSG00000126461.10455.89330202.230701.172604.797703.85380HepG2PPIL4
SCAF1ENSG00000126461.10806.85200497.501200.6975010.307109.38200HepG2PTBP1
SCAF1ENSG00000126461.10634.94220387.513700.712306.971306.08090HepG2PUF60
SCAF1ENSG00000126461.10751.57310411.361300.8694016.4781015.27900HepG2PUM1
SCAF1ENSG00000126461.10636.18110411.061800.630002.580701.93290HepG2PUM2
SCAF1ENSG00000126461.101102.06960845.447400.382303.657703.08390HepG2RBM22
SCAF1ENSG00000126461.10566.18660306.420900.885707.370105.74180HepG2RBM27
SCAF1ENSG00000126461.10514.15930248.828601.047008.077006.28070HepG2RCC2
SCAF1ENSG00000126461.10875.75890553.632400.661509.501008.60750HepG2NELFE
SCAF1ENSG00000126461.10730.82770515.703400.502905.584104.74620HepG2RECQL
SCAF1ENSG00000126461.10587.84090351.932100.740003.157802.50770HepG2RPS19
SCAF1ENSG00000126461.10590.03550282.578701.0620010.525009.05170HepG2RPS2
SCAF1ENSG00000126461.10475.02040278.605100.769702.336801.59880HepG2RPS3A
SCAF1ENSG00000126461.10491.41670288.475900.768405.344903.83930HepG2RPS5
SCAF1ENSG00000126461.10527.90100201.917701.3864025.3274023.64970HepG2SAFB2
SCAF1ENSG00000126461.10506.42020262.343700.948804.075702.50150HepG2SART3
SCAF1ENSG00000126461.101570.468901138.654500.463802.985202.28400HepG2SF3A3
SCAF1ENSG00000126461.10791.70710517.879600.612308.027907.10220HepG2SF3B4
SCAF1ENSG00000126461.10644.16690371.561900.7937012.0654010.77660HepG2SLBP
SCAF1ENSG00000126461.10461.22130235.467600.9698012.9511011.71770HepG2SMN1
SCAF1ENSG00000126461.10599.24810295.016701.022303.001902.00030HepG2SMNDC1
SCAF1ENSG00000126461.10364.90530749.49760-1.038402.639001.87640HepG2SNRNP70
SCAF1ENSG00000126461.101467.64940954.876600.620008.902608.14430HepG2SRFBP1
SCAF1ENSG00000126461.10435.15790540.58820-0.313001.750501.35000HepG2SRSF1
SCAF1ENSG00000126461.10711.23690382.611400.8944014.5869013.31140HepG2SRSF5
SCAF1ENSG00000126461.10805.97710632.711800.349102.845402.14000HepG2SRSF7
SCAF1ENSG00000126461.10246.85810439.82660-0.833306.234505.46540HepG2SRSF9
SCAF1ENSG00000126461.10515.70240242.497901.088506.403304.66450HepG2STIP1
SCAF1ENSG00000126461.10939.96690435.136201.1110027.3487025.72740HepG2SUCLG1
SCAF1ENSG00000126461.10179.46040485.99610-1.4373014.7972013.65390HepG2TAF15
SCAF1ENSG00000126461.10398.68000220.307600.855605.531004.87250HepG2TIAL1
SCAF1ENSG00000126461.10598.87420222.287401.4297025.0212023.53410HepG2TRIM56
SCAF1ENSG00000126461.10692.38270378.581800.870902.060701.31750HepG2TUFM
SCAF1ENSG00000126461.101576.11060971.512800.698008.150807.07380HepG2U2AF1
SCAF1ENSG00000126461.10892.88590329.278601.439103.103202.05750HepG2U2AF2
SCAF1ENSG00000126461.101114.08800400.721201.475104.552403.46060HepG2UBE2L3
SCAF1ENSG00000126461.10524.35030249.570401.071006.295804.64410HepG2XPO5
SCAF1ENSG00000126461.10512.37490318.495000.685803.471002.66450HepG2XRN2
SCAF1ENSG00000126461.10740.45860613.698700.270802.276801.66010HepG2ZC3H8
SCAF1ENSG00000126461.101615.442401172.472700.462306.258205.45770K562AGGF1
SCAF1ENSG00000126461.101728.114201288.483900.423404.608303.26510K562AKAP8
SCAF1ENSG00000126461.101845.999601484.168700.314602.843101.58540K562APOBEC3C
SCAF1ENSG00000126461.101711.057001335.026900.357903.143402.52540K562AQR
SCAF1ENSG00000126461.101732.771401280.167300.436605.793604.41160K562ATP5C1
SCAF1ENSG00000126461.10821.71360468.916500.809204.862703.03640K562BCCIP
SCAF1ENSG00000126461.10821.52540453.222500.858006.672205.14970K562BCLAF1
SCAF1ENSG00000126461.101187.50810731.333700.699205.186903.64300K562CCAR1
SCAF1ENSG00000126461.10494.15400319.649100.628404.818103.12480K562CIRBP
SCAF1ENSG00000126461.102371.090101585.683700.580309.544607.49600K562CPEB4
SCAF1ENSG00000126461.10775.95380620.451100.322602.091901.40150K562CPSF6
SCAF1ENSG00000126461.10697.55280343.837001.020503.040601.92870K562CSTF2
SCAF1ENSG00000126461.101520.672802068.56810-0.443906.429104.95460K562CELF1
SCAF1ENSG00000126461.10953.58940698.029300.450004.223102.89540K562DDX3X
SCAF1ENSG00000126461.102469.344501640.747800.5897013.8969012.54700K562DDX47
SCAF1ENSG00000126461.10900.29040482.258700.900509.899708.07060K562EFTUD2
SCAF1ENSG00000126461.101395.541001118.482700.319203.410402.62510K562EIF2S2
SCAF1ENSG00000126461.101175.81130743.852700.660504.203602.93830K562EIF3A
SCAF1ENSG00000126461.10781.42780516.122900.598303.857102.61230K562EIF3D
SCAF1ENSG00000126461.10420.70730242.219200.796407.393806.10460K562EIF3G
SCAF1ENSG00000126461.10941.53530656.719700.519606.418004.52760K562EIF4B
SCAF1ENSG00000126461.102036.542101682.062400.275802.787501.84650K562EIF4G2
SCAF1ENSG00000126461.101212.86930984.720000.300502.088301.34770K562FIP1L1
SCAF1ENSG00000126461.10363.22480574.94860-0.662602.611601.52250K562FKBP4
SCAF1ENSG00000126461.101102.65670758.391400.539907.388206.46380K562FXR1
SCAF1ENSG00000126461.1027.26370139.22800-2.352409.805708.31670K562G3BP2
SCAF1ENSG00000126461.10956.68260661.425900.532405.093804.30590K562HNRNPC
SCAF1ENSG00000126461.101802.190801342.704200.424502.639101.76630K562HNRNPU
SCAF1ENSG00000126461.10977.418701335.01660-0.449803.878502.93950K562HSPD1
SCAF1ENSG00000126461.10765.03920298.337201.358506.546704.68470K562IGF2BP2
SCAF1ENSG00000126461.10565.06120303.411800.8970010.190207.76350K562IGF2BP3
SCAF1ENSG00000126461.10857.06230313.447801.4511029.2307026.33260K562MAGOH
SCAF1ENSG00000126461.101504.556301239.395500.279602.433601.44700K562MAK16
SCAF1ENSG00000126461.10623.81320312.797700.9958013.0068010.89320K562MATR3
SCAF1ENSG00000126461.101780.298401450.369100.295602.109601.33170K562MBNL1
SCAF1ENSG00000126461.10908.09940578.210900.651206.993405.56830K562METAP2
SCAF1ENSG00000126461.10811.23440475.744800.769803.373601.91750K562NONO
SCAF1ENSG00000126461.10545.26290306.438100.831309.224406.73190K562PCBP1
SCAF1ENSG00000126461.10543.89180278.873900.963605.583004.18220K562PCBP2
SCAF1ENSG00000126461.10833.16990469.299100.828007.612806.36350K562PRPF8
SCAF1ENSG00000126461.10809.24860593.094000.448203.190302.20890K562PSIP1
SCAF1ENSG00000126461.10897.44990304.541101.5591035.8809033.58230K562PTBP1
SCAF1ENSG00000126461.101454.411401952.35800-0.424805.611704.04670K562PUM1
SCAF1ENSG00000126461.101247.73680780.348200.677004.179101.78450K562RBFOX2
SCAF1ENSG00000126461.101592.117701178.878900.433404.025103.32620K562RBM15
SCAF1ENSG00000126461.10688.02850291.967801.2366012.9162010.90540K562RBM22
SCAF1ENSG00000126461.10606.21040284.651701.0905012.662009.35540K562RBM34
SCAF1ENSG00000126461.10755.41590541.392700.480504.104802.89470K562RCC2
SCAF1ENSG00000126461.10519.23370307.261200.756804.470303.04600K562NELFE
SCAF1ENSG00000126461.10818.59450477.867000.776402.742601.93070K562RPS19
SCAF1ENSG00000126461.10761.97250410.041600.893906.826105.16660K562RPS3
SCAF1ENSG00000126461.10255.66440144.639000.821705.494604.26380K562SF3B4
SCAF1ENSG00000126461.10763.43850513.197700.572904.877303.39960K562SRFBP1
SCAF1ENSG00000126461.10716.17070468.847700.611103.206001.42850K562SRP68
SCAF1ENSG00000126461.10879.21880298.562201.5581032.7118030.32450K562SRSF1
SCAF1ENSG00000126461.10914.52540395.800501.2081019.8645016.90300K562SRSF4
SCAF1ENSG00000126461.10657.97180281.995301.2223017.2927014.52710K562SRSF5
SCAF1ENSG00000126461.10757.86910454.084500.738902.957401.90470K562SUPV3L1
SCAF1ENSG00000126461.101002.58710302.142001.7303027.7961025.07730K562TARDBP
SCAF1ENSG00000126461.10847.85620291.455901.5404032.5202029.47150K562TIA1
SCAF1ENSG00000126461.10665.39030286.058201.217805.542703.88120K562TRA2A
SCAF1ENSG00000126461.10835.66240606.304800.462802.778501.83000K562TRIM56
SCAF1ENSG00000126461.10733.78640480.741900.610002.444901.49370K562UCHL5
SCAF1ENSG00000126461.10885.11720489.765200.853708.853506.36860K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCAF1 is not available on ENCORE database.





7 RBPs can affect the splicing of SCAF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSCAF1ENSG00000126461.10chr19+5014931350149459501493645014945950148610501486680.075000.000020.00023longerK562AQR
A5SSSCAF1ENSG00000126461.10chr19+5016101750161247501610175016114650161464501618990.179000.000130.04526longerHepG2SUPV3L1
A5SSSCAF1ENSG00000126461.10chr19+5015760550157783501576055015768850157908501581270.082000.000000.00002longerK562PUS1
A5SSSCAF1ENSG00000126461.10chr19+5016102650161247501610265016114650161464501618990.255000.000000.00000longerK562AQR
A5SSSCAF1ENSG00000126461.10chr19+5015753650157783501575365015768850157908501581270.070000.000090.00238longerK562AQR
A5SSSCAF1ENSG00000126461.10chr19+5014827750148518501482775014839150148610501486680.172000.000000.00000longerK562AQR
A5SSSCAF1ENSG00000126461.10chr19+5016101750161247501610175016114650161464501618990.199000.003140.09045longerHepG2U2AF2
A5SSSCAF1ENSG00000126461.10chr19+5016101750161247501610175016114650161464501618990.088000.000720.07511longerHepG2PCBP1
A5SSSCAF1ENSG00000126461.10chr19+5015760550157783501576055015768850157908501581270.070000.000100.01384longerK562UTP18
A5SSSCAF1ENSG00000126461.10chr19+5015760550157783501576055015768850157908501581270.073000.000000.00080longerK562AKAP8L
MXESCAF1ENSG00000126461.10chr19+5015412450156962501576055015778350149971501500875015790850158127-0.197000.000000.000082includedK562PUS1
MXESCAF1ENSG00000126461.10chr19+5015412450156962501576055015768850149971501500875015790850158127-0.117000.000880.018382includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCAF1 is not avaliable on ENCORE database.