RIMKLA

General Information

Gene Name       : RIMKLA
Gene ID             : ENSG00000177181.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RIMKLA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RIMKLAENSG00000177181.140.370.280.33ENCSR000AEF
HepG2RIMKLAENSG00000177181.141.101.821.46ENCSR985KAT
K562RIMKLAENSG00000177181.140.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RIMKLA is not avaliable on ENCORE database.



Proteins bound to RNA
  • RIMKLA RNA is bound by 1 proteins.  







eCLIP assay for RIMKLA is not avaliable on ENCORE database.





1 proteins are bound to RIMKLA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14284657842846714+5'-UTR,CDS5.3787211.05478HepG2DDX3X
chr14284648442846578+5'-UTR4.339827.51958HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RIMKLA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RIMKLA is not available on ENCORE database.

  • 132 RBPs can affect the levels of RIMKLA.  








The Knockdown/knockout RNA-Seq assay for RIMKLA is not available on ENCORE database.





132 RBPs can affect the gene expression of RIMKLA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RIMKLAENSG00000177181.10179.43340449.16670-1.323807.720406.25810HepG2ABCF1
RIMKLAENSG00000177181.10180.80500265.53990-0.554502.452201.46970HepG2AKAP8
RIMKLAENSG00000177181.10412.56370513.01080-0.314402.113001.43020HepG2AKAP8L
RIMKLAENSG00000177181.10301.48180498.86530-0.726605.362304.28620HepG2ASCC1
RIMKLAENSG00000177181.10857.26460427.073201.0052020.0382018.49900HepG2AUH
RIMKLAENSG00000177181.10112.40500254.81740-1.180806.578605.10130HepG2BCCIP
RIMKLAENSG00000177181.10354.86420221.429800.680303.158602.19630HepG2BCLAF1
RIMKLAENSG00000177181.1080.60030166.61910-1.047705.012204.23800HepG2BOP1
RIMKLAENSG00000177181.10276.81450386.20700-0.480502.809802.03230HepG2CALR
RIMKLAENSG00000177181.10181.73560473.96480-1.3829015.2033013.55860HepG2CIRBP
RIMKLAENSG00000177181.10281.59410510.49230-0.8583011.7212010.54430HepG2CKAP4
RIMKLAENSG00000177181.1088.45290157.41800-0.831603.343502.16970HepG2CSTF2
RIMKLAENSG00000177181.10480.06090593.47720-0.306002.202401.52960HepG2DAZAP1
RIMKLAENSG00000177181.10232.83190472.25780-1.0203015.4343013.82140HepG2DDX19B
RIMKLAENSG00000177181.10154.56140445.21930-1.5263018.2979016.74920HepG2DDX21
RIMKLAENSG00000177181.10269.77430435.43800-0.690705.513604.21960HepG2DDX24
RIMKLAENSG00000177181.10394.85400577.52540-0.548603.506002.81150HepG2DDX3X
RIMKLAENSG00000177181.10350.21150209.870500.738604.978503.26820HepG2DDX47
RIMKLAENSG00000177181.10121.74100250.53150-1.041205.344104.31330HepG2DDX55
RIMKLAENSG00000177181.10253.41820406.64200-0.682202.474901.51500HepG2DDX5
RIMKLAENSG00000177181.10861.68670496.238500.796006.946206.00320HepG2DDX6
RIMKLAENSG00000177181.10130.09460488.54340-1.9089034.9234033.21700HepG2DKC1
RIMKLAENSG00000177181.10185.28480326.49570-0.817306.655705.60130HepG2DNAJC21
RIMKLAENSG00000177181.1098.73830320.25170-1.6975015.4934013.59080HepG2EEF2
RIMKLAENSG00000177181.10152.82060267.01290-0.805104.286502.90320HepG2EFTUD2
RIMKLAENSG00000177181.10687.19650476.914800.526903.527202.86200HepG2EIF2S1
RIMKLAENSG00000177181.10190.89300340.59130-0.835305.259803.67540HepG2EIF2S2
RIMKLAENSG00000177181.10125.89130259.99430-1.046306.637305.28610HepG2EIF3D
RIMKLAENSG00000177181.10190.03600420.27540-1.1451012.8873010.91890HepG2EIF3G
RIMKLAENSG00000177181.1067.45720526.98350-2.9657048.6503046.06010HepG2EIF4A3
RIMKLAENSG00000177181.10453.44540585.56710-0.368902.606001.79020HepG2EIF4G1
RIMKLAENSG00000177181.10332.56640560.92400-0.754206.429205.21050HepG2EIF4G2
RIMKLAENSG00000177181.10226.07170388.97240-0.782906.027404.47760HepG2ESF1
RIMKLAENSG00000177181.10185.27990490.31810-1.4040022.3373020.90810HepG2ETF1
RIMKLAENSG00000177181.10300.88380498.95500-0.729706.441205.16890HepG2EWSR1
RIMKLAENSG00000177181.10340.41030232.328300.551003.545102.20630HepG2FAM120A
RIMKLAENSG00000177181.10221.50820453.51180-1.033808.053106.81570HepG2FIP1L1
RIMKLAENSG00000177181.10339.57330208.538500.703303.855102.37150HepG2FKBP4
RIMKLAENSG00000177181.10329.69120555.29170-0.752105.559903.23030HepG2FMR1
RIMKLAENSG00000177181.10403.44560531.89640-0.398802.097501.49210HepG2FXR1
RIMKLAENSG00000177181.10362.79300493.31080-0.443402.349701.73350HepG2G3BP1
RIMKLAENSG00000177181.10218.42670523.84480-1.2620013.8739011.89050HepG2G3BP2
RIMKLAENSG00000177181.10279.07560379.12980-0.442002.292001.36830HepG2GNB2L1
RIMKLAENSG00000177181.10334.18160487.49710-0.544805.188103.89770HepG2HDGF
RIMKLAENSG00000177181.10270.66100459.61600-0.763903.793002.15630HepG2HLTF
RIMKLAENSG00000177181.1095.73580329.62320-1.7837017.9171016.50570HepG2HNRNPA1
RIMKLAENSG00000177181.10418.43630545.45920-0.382502.604201.69470HepG2HNRNPA2B1
RIMKLAENSG00000177181.10121.23620366.63190-1.5965016.4739014.92120HepG2HNRNPC
RIMKLAENSG00000177181.10212.29590312.79600-0.559103.421202.37260HepG2HNRNPM
RIMKLAENSG00000177181.10199.71400364.20890-0.866808.667307.63970HepG2HNRNPU
RIMKLAENSG00000177181.10227.52160501.40370-1.1400011.3609010.09150HepG2IGF2BP2
RIMKLAENSG00000177181.10121.25610470.69060-1.9567010.533708.71740HepG2IGF2BP3
RIMKLAENSG00000177181.10276.61250372.02950-0.427603.126002.35050HepG2ILF2
RIMKLAENSG00000177181.10298.53570504.39370-0.756604.695603.35540HepG2KHSRP
RIMKLAENSG00000177181.10193.55810588.46740-1.6042018.5648016.41220HepG2LARP4
RIMKLAENSG00000177181.10203.71130371.49410-0.866807.036405.27210HepG2LARP7
RIMKLAENSG00000177181.10137.54930389.98270-1.5035017.0190014.31960HepG2LIN28B
RIMKLAENSG00000177181.10220.98360372.62030-0.753804.983502.76770HepG2LSM11
RIMKLAENSG00000177181.10111.64950532.08290-2.2527034.0581031.96510HepG2MAGOH
RIMKLAENSG00000177181.10209.42490314.50250-0.586603.172601.44400HepG2MARK2
RIMKLAENSG00000177181.10314.62110535.02970-0.766005.400004.54330HepG2MATR3
RIMKLAENSG00000177181.10205.30830366.87180-0.837506.443005.25750HepG2MSI2
RIMKLAENSG00000177181.10280.78370168.786400.734202.949701.94580HepG2MTPAP
RIMKLAENSG00000177181.10427.55120308.104500.472602.603801.42520HepG2NAA15
RIMKLAENSG00000177181.10104.87290547.60720-2.3845037.2334035.11660HepG2NCBP2
RIMKLAENSG00000177181.10462.99360588.49490-0.346002.204601.52310HepG2NOL12
RIMKLAENSG00000177181.10234.87780377.46230-0.684404.333601.84760HepG2NUSAP1
RIMKLAENSG00000177181.10108.60350194.39420-0.839903.303401.55630HepG2PA2G4
RIMKLAENSG00000177181.10229.20330487.56320-1.0890010.430309.05000HepG2PABPC4
RIMKLAENSG00000177181.10199.04720360.52060-0.857008.094906.76650HepG2PARN
RIMKLAENSG00000177181.10285.63630533.59710-0.9016011.8093010.69600HepG2PCBP1
RIMKLAENSG00000177181.10232.63180453.43380-0.962806.573805.02980HepG2PCBP2
RIMKLAENSG00000177181.10114.52700215.00500-0.908705.367803.67410HepG2PKM
RIMKLAENSG00000177181.10164.21850324.84750-0.984109.234607.93310HepG2PPIL4
RIMKLAENSG00000177181.10141.38620236.20040-0.740402.292001.58030HepG2PRPF4
RIMKLAENSG00000177181.10110.19610193.30280-0.810803.205402.34210HepG2PRPF8
RIMKLAENSG00000177181.10249.66980423.77430-0.763303.301101.36810HepG2PSIP1
RIMKLAENSG00000177181.10229.02310542.96670-1.2454020.1497018.93280HepG2PTBP1
RIMKLAENSG00000177181.10241.14140561.79090-1.2202015.4505014.19530HepG2PUF60
RIMKLAENSG00000177181.10154.18160596.39040-1.9516047.5129045.66860HepG2PUM1
RIMKLAENSG00000177181.10317.49090595.93950-0.9085010.577209.31220HepG2PUM2
RIMKLAENSG00000177181.10405.82520520.12560-0.358002.753902.13920HepG2PUS1
RIMKLAENSG00000177181.10402.15780588.02150-0.548104.667703.88790HepG2QKI
RIMKLAENSG00000177181.10166.40000437.45720-1.394509.419508.17280HepG2RAVER1
RIMKLAENSG00000177181.10198.66840409.81920-1.0446011.0839010.19760HepG2RBM22
RIMKLAENSG00000177181.10168.99780533.67670-1.6590025.7213023.79730HepG2RBM25
RIMKLAENSG00000177181.10166.07620447.97180-1.4316015.7509013.41980HepG2RBM27
RIMKLAENSG00000177181.10130.14390363.77390-1.4829011.995009.84010HepG2RCC2
RIMKLAENSG00000177181.10269.79030604.26010-1.1633017.9040016.75940HepG2NELFE
RIMKLAENSG00000177181.10175.47000562.80370-1.6814031.5461029.88260HepG2RECQL
RIMKLAENSG00000177181.10228.99840378.67520-0.725604.861502.19340HepG2RPL23A
RIMKLAENSG00000177181.1062.39570163.10260-1.386307.543106.49790HepG2RPLP0
RIMKLAENSG00000177181.10153.84310429.92980-1.4826012.6702010.80970HepG2RPS10
RIMKLAENSG00000177181.1054.85070252.96610-2.2054022.5229021.03550HepG2RPS19
RIMKLAENSG00000177181.10116.84020413.13080-1.8221022.7821020.68760HepG2RPS2
RIMKLAENSG00000177181.1088.97600183.99200-1.048204.905903.83760HepG2RPS3A
RIMKLAENSG00000177181.10149.19140421.73620-1.4992017.2236014.61510HepG2RPS5
RIMKLAENSG00000177181.1074.77280191.22020-1.354706.943405.76170HepG2RRP9
RIMKLAENSG00000177181.10205.49860476.21330-1.212509.150906.53760HepG2RTF1
RIMKLAENSG00000177181.10188.87430324.35170-0.780106.623405.69000HepG2SAFB2
RIMKLAENSG00000177181.1084.75210253.92220-1.5831012.5680010.64680HepG2SERBP1
RIMKLAENSG00000177181.10263.55430617.88190-1.2292012.1391010.66840HepG2SF3A3
RIMKLAENSG00000177181.10245.81080565.27750-1.2014015.8296014.59300HepG2SF3B4
RIMKLAENSG00000177181.10382.47410538.72040-0.494203.070502.33670HepG2SLBP
RIMKLAENSG00000177181.10129.27850378.26180-1.5489023.3033021.73270HepG2SMN1
RIMKLAENSG00000177181.10266.27520446.66830-0.746304.602403.34130HepG2SMNDC1
RIMKLAENSG00000177181.10286.72160426.30120-0.572202.928201.30210HepG2SND1
RIMKLAENSG00000177181.10183.45140590.03580-1.6854032.5749031.34510HepG2SRSF1
RIMKLAENSG00000177181.10234.65630554.71610-1.2412019.7119018.24680HepG2SRSF5
RIMKLAENSG00000177181.10177.81110401.90400-1.1765014.7439013.74920HepG2SSB
RIMKLAENSG00000177181.10100.62840160.05760-0.669602.497101.46100HepG2STIP1
RIMKLAENSG00000177181.10278.24630630.83980-1.1809015.9727014.67650HepG2SUCLG1
RIMKLAENSG00000177181.10165.69110291.65230-0.815804.220702.57640HepG2SUGP2
RIMKLAENSG00000177181.10195.73600306.08620-0.645004.293603.13330HepG2SUPT6H
RIMKLAENSG00000177181.1099.06900249.41120-1.332007.930306.87990HepG2SUPV3L1
RIMKLAENSG00000177181.1096.21380161.32260-0.745602.852502.11840HepG2TARDBP
RIMKLAENSG00000177181.10125.64760282.95120-1.171205.208603.78210HepG2TBRG4
RIMKLAENSG00000177181.10356.28660487.31350-0.451803.059902.18540HepG2TIA1
RIMKLAENSG00000177181.1039.28620353.94560-3.1714050.8401049.19390HepG2TIAL1
RIMKLAENSG00000177181.10242.20060439.44030-0.859505.148603.19170HepG2TRA2A
RIMKLAENSG00000177181.1065.77770206.60940-1.6512011.448508.66480HepG2TROVE2
RIMKLAENSG00000177181.10224.10240548.88610-1.2923016.9498014.59800HepG2TUFM
RIMKLAENSG00000177181.10141.84120387.85250-1.4512012.0312010.69200HepG2U2AF1
RIMKLAENSG00000177181.10247.68330581.01370-1.2301011.130609.40430HepG2UBE2L3
RIMKLAENSG00000177181.1065.17180147.34240-1.176905.497404.42050HepG2UCHL5
RIMKLAENSG00000177181.10429.37810529.03960-0.301101.931401.41280HepG2UTP3
RIMKLAENSG00000177181.10231.39300430.37740-0.895305.262503.50730HepG2XRCC5
RIMKLAENSG00000177181.10200.48140481.20100-1.2632010.939208.98760HepG2XRCC6
RIMKLAENSG00000177181.10140.16700245.51770-0.808703.646302.82310HepG2XRN2
RIMKLAENSG00000177181.10149.76620233.08630-0.638203.588402.83940HepG2ZC3H8
RIMKLAENSG00000177181.10447.88610602.65820-0.428204.270003.62980HepG2ZNF622
RIMKLAENSG00000177181.10240.28000437.26540-0.863805.837103.87420HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RIMKLA is not available on ENCORE database.





1 RBPs can affect the splicing of RIMKLA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSRIMKLAENSG00000177181.10chr1+428756544287585842875654428757424288015442888249-0.266000.000820.08459shorterHepG2TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RIMKLA is not avaliable on ENCORE database.