RAB18

General Information

Gene Name       : RAB18
Gene ID             : ENSG00000099246.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB18)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB18ENSG00000099246.1622.4221.1221.77ENCSR000AEF
HepG2RAB18ENSG00000099246.1625.2746.9936.13ENCSR985KAT
K562RAB18ENSG00000099246.1614.1614.3714.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB18 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB18 RNA is bound by 14 proteins.  







eCLIP assay for RAB18 is not avaliable on ENCORE database.





14 proteins are bound to RAB18 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr102782860827828673+3'-UTR4.4858812.30466K562KHSRP
chr102782856027828659+3'-UTR3.804765.70786HepG2ZC3H11A
chr102782682927826977+3'-UTR,CDS3.425479.77890K562ZNF622
chr102782699827827097+3'-UTR3.0195512.12891K562PUM2
chr102783035227830475+3'-UTR4.060377.90970K562KHSRP
chr102782680527826981+3'-UTR,CDS3.511084.88141HepG2GRWD1
chr102782835827828464+3'-UTR4.538913.50031HepG2HNRNPL
chr102782852527828672+3'-UTR4.5512817.33066HepG2FUBP3
chr102782855527828649+3'-UTR3.327013.78824HepG2KHSRP
chr102782854527828668+3'-UTR5.684747.41065K562ZC3H11A
chr102782859427828677+3'-UTR4.4088216.48885K562TIA1
chr102779323927793369+5'-UTR,CDS,intron-Proximal4.2054914.76848K562ZNF622
chr102779327327793395+5'-UTR,CDS,intron-Proximal3.075724.24993HepG2PPIG
chr102779324427793320+5'-UTR,CDS4.075416.77282K562SRSF1
chr102782281127822908+CDS,intron-Distal,intron-Proximal4.3985515.53137K562SF3B4
chr102782283527822971+CDS,intron-Distal,intron-Proximal3.994488.56414K562PRPF8
chr102779332027793368+CDS,intron-Proximal3.224583.10677K562SRSF1
chr102782275027822927+CDS,intron-Distal,intron-Proximal3.3728212.57500K562EFTUD2
chr102779879927798874+CDS,intron-Proximal3.396638.43531K562ZNF622
chr102782278027822917+CDS,intron-Distal,intron-Proximal3.091726.18174HepG2EFTUD2
chr102781575527815827+CDS,intron-Distal,intron-Proximal3.628153.95301K562ZNF622
chr102782142827821522+CDS,intron-Distal,intron-Proximal3.751089.43339K562EFTUD2
chr102779334127793414+CDS,intron-Proximal3.832206.65114HepG2PRPF8
chr102781005327810125+intron-Distal3.477583.46531K562KHSRP
chr102779925427799337+intron-Distal3.285616.38944K562KHSRP
chr102779910627799173+intron-Distal4.589589.40001K562KHSRP
chr102781845727818592+intron-Distal3.679625.07626HepG2PTBP1
chr102781804727818127+intron-Distal4.284946.19377K562KHSRP
chr102782154327821593+intron-Distal,intron-Proximal4.270325.35459K562KHSRP
chr102782159327821610+intron-Distal,intron-Proximal3.796383.07751K562KHSRP
chr102781586027815920+intron-Distal,intron-Proximal3.373013.55116K562KHSRP
chr102780756927807689+intron-Distal3.834485.98773K562KHSRP
chr102779901227799106+intron-Distal3.799999.27366K562KHSRP
chr102781798627818047+intron-Distal3.443547.20875K562KHSRP
chr102781780727817874+intron-Distal3.604634.96160K562KHSRP
chr102779916427799261+intron-Distal4.516265.60990HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB18 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB18 is not available on ENCORE database.

  • 98 RBPs can affect the levels of RAB18.  








The Knockdown/knockout RNA-Seq assay for RAB18 is not available on ENCORE database.





98 RBPs can affect the gene expression of RAB18 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB18ENSG00000099246.121910.297201263.936100.5958014.6757013.50960HepG2ACO1
RAB18ENSG00000099246.123263.768802083.869100.647206.715705.92800HepG2AKAP1
RAB18ENSG00000099246.121548.192701181.007400.390502.787901.74720HepG2AKAP8
RAB18ENSG00000099246.122653.001401861.813400.510808.377907.29100HepG2AUH
RAB18ENSG00000099246.121412.493701130.198900.321603.045701.75270HepG2BUD13
RAB18ENSG00000099246.122291.205801320.719700.7947012.4016010.96100HepG2CALR
RAB18ENSG00000099246.121064.599401263.73490-0.247402.748302.08370HepG2CKAP4
RAB18ENSG00000099246.12934.737501139.44080-0.285702.495401.53220HepG2YBX3
RAB18ENSG00000099246.121296.83700892.399100.539103.518901.91180HepG2CSTF2T
RAB18ENSG00000099246.122754.536201594.704200.7884022.7376021.26070HepG2CELF1
RAB18ENSG00000099246.121377.339901141.064700.271402.553701.44300HepG2DDX1
RAB18ENSG00000099246.123107.585701996.264600.638407.530706.54410HepG2DDX3X
RAB18ENSG00000099246.121059.13290831.760200.348502.402201.37190HepG2EFTUD2
RAB18ENSG00000099246.121326.25260886.120000.581703.180401.98510HepG2AGO1
RAB18ENSG00000099246.121265.927801648.51580-0.381002.748302.15730HepG2EIF2S1
RAB18ENSG00000099246.121024.18400809.895400.338602.137301.33400HepG2EIF3D
RAB18ENSG00000099246.121424.993301821.88930-0.354502.187601.61580HepG2EIF4A3
RAB18ENSG00000099246.121320.952601773.70150-0.425202.449301.80120HepG2EIF4B
RAB18ENSG00000099246.121220.47430917.292900.411902.505801.41270HepG2FASTKD2
RAB18ENSG00000099246.121975.033101522.749400.375102.764201.99440HepG2FIP1L1
RAB18ENSG00000099246.121277.41990964.775300.404903.115601.76960HepG2FKBP4
RAB18ENSG00000099246.121452.957001837.95090-0.339102.408601.76100HepG2FXR1
RAB18ENSG00000099246.121925.632501575.907100.289003.489902.45800HepG2HNRNPA2B1
RAB18ENSG00000099246.12927.754001256.46150-0.437603.911503.09790HepG2HNRNPC
RAB18ENSG00000099246.121212.694601422.81840-0.230502.129001.49360HepG2HNRNPF
RAB18ENSG00000099246.121219.647501726.25550-0.501205.036604.11490HepG2HNRNPK
RAB18ENSG00000099246.121313.941801562.09830-0.249603.375902.63790HepG2HNRNPL
RAB18ENSG00000099246.121108.415101401.07380-0.338003.124602.35900HepG2IGF2BP1
RAB18ENSG00000099246.121260.44700970.965500.376303.434001.62100HepG2CCAR2
RAB18ENSG00000099246.121441.119601078.153000.418503.551301.62080HepG2LSM11
RAB18ENSG00000099246.121187.28870847.677100.486002.370901.39420HepG2METAP2
RAB18ENSG00000099246.121754.842801232.906400.509205.952604.80750HepG2MSI2
RAB18ENSG00000099246.12933.255901235.49010-0.404705.259504.14050HepG2PARN
RAB18ENSG00000099246.121144.711001620.79550-0.501709.039308.04490HepG2PCBP1
RAB18ENSG00000099246.12864.236701113.25970-0.365303.849502.99360HepG2PPIL4
RAB18ENSG00000099246.122065.113201623.147900.347303.192202.55870HepG2PUF60
RAB18ENSG00000099246.122168.053801721.770400.332403.525902.77300HepG2PUM2
RAB18ENSG00000099246.122561.542601142.291601.1650010.937109.59800HepG2RAVER1
RAB18ENSG00000099246.122876.570601786.589100.6870017.7045016.62510HepG2RBM22
RAB18ENSG00000099246.12932.091101295.50300-0.475003.193302.12380HepG2RBM27
RAB18ENSG00000099246.121221.897801709.40520-0.484408.546407.55200HepG2RECQL
RAB18ENSG00000099246.12848.827601111.55200-0.389005.171404.33970HepG2SAFB2
RAB18ENSG00000099246.122135.886901488.182600.521203.703202.91910HepG2SF3A3
RAB18ENSG00000099246.121304.526401556.26910-0.254603.276002.52320HepG2SLBP
RAB18ENSG00000099246.123235.380501808.825000.838806.929905.68660HepG2SNRNP70
RAB18ENSG00000099246.123371.265202017.920800.7403028.5561027.38720HepG2SRFBP1
RAB18ENSG00000099246.122397.816901792.230700.419905.325604.72390HepG2SRSF1
RAB18ENSG00000099246.121854.535001602.577300.210602.058801.50880HepG2SRSF5
RAB18ENSG00000099246.121459.788001067.449100.451502.481301.34630HepG2SUB1
RAB18ENSG00000099246.121663.795001153.870000.527904.954104.09000HepG2SUPV3L1
RAB18ENSG00000099246.121014.902701212.90420-0.257101.976601.53910HepG2TIAL1
RAB18ENSG00000099246.12795.832601146.68430-0.526903.137101.57650HepG2TRA2A
RAB18ENSG00000099246.12963.896801223.65310-0.344204.162203.49860HepG2TRIM56
RAB18ENSG00000099246.12663.720101056.82780-0.671103.020001.97050HepG2UPF2
RAB18ENSG00000099246.121576.082201274.205800.306603.811003.12560HepG2UTP3
RAB18ENSG00000099246.12767.869101135.85580-0.564804.179803.29580HepG2XRN2
RAB18ENSG00000099246.12999.02170764.091800.386704.999104.14110HepG2ZC3H8
RAB18ENSG00000099246.122234.892901451.516800.6225019.8470018.71220HepG2ZNF622
RAB18ENSG00000099246.12905.10690696.105000.378702.731601.55860K562AARS
RAB18ENSG00000099246.121928.393001325.657600.5406011.2133010.16500K562AGGF1
RAB18ENSG00000099246.122185.405501379.428300.6637010.266408.90260K562AKAP8L
RAB18ENSG00000099246.122857.442601596.819000.8394014.2846013.09730K562AQR
RAB18ENSG00000099246.121992.156901447.392900.460807.493105.87910K562ATP5C1
RAB18ENSG00000099246.121692.092001051.161400.686708.318806.76640K562BOP1
RAB18ENSG00000099246.122107.068201454.317100.534802.575301.55860K562CNOT7
RAB18ENSG00000099246.122783.219201996.779700.479006.759305.25320K562CELF1
RAB18ENSG00000099246.121611.949401344.165000.262002.887402.22200K562DDX47
RAB18ENSG00000099246.121934.832301484.229000.382405.696504.38390K562DKC1
RAB18ENSG00000099246.121096.69050661.257000.729807.640105.62390K562FKBP4
RAB18ENSG00000099246.121017.01020796.784200.352003.320701.83630K562FUS
RAB18ENSG00000099246.121798.899401171.868500.618202.423801.76840K562G3BP2
RAB18ENSG00000099246.121061.95590857.094700.309102.733401.60070K562GLRX3
RAB18ENSG00000099246.121442.355301067.093500.434602.796801.99830K562GPKOW
RAB18ENSG00000099246.122307.347101232.115400.905005.019303.22000K562HNRNPA2B1
RAB18ENSG00000099246.12525.30550680.19230-0.372802.507401.43150K562HNRNPF
RAB18ENSG00000099246.121216.02040804.488200.595905.222203.89750K562HNRNPM
RAB18ENSG00000099246.122593.062801463.842900.8248013.3537011.10360K562KIF1C
RAB18ENSG00000099246.121051.330701280.52620-0.284502.203001.44770K562MAGOH
RAB18ENSG00000099246.122015.942401401.318900.524602.657001.60860K562MAK16
RAB18ENSG00000099246.12922.258301277.99380-0.470604.425403.23310K562MATR3
RAB18ENSG00000099246.122581.183501639.884300.654303.877502.77130K562MBNL1
RAB18ENSG00000099246.12776.691201041.60650-0.423403.600702.59410K562METAP2
RAB18ENSG00000099246.122479.685301730.718200.518705.829204.19680K562MSI2
RAB18ENSG00000099246.122244.395901149.446700.965306.512504.94760K562NAA15
RAB18ENSG00000099246.121370.616101004.539100.448202.538401.36450K562NCBP2
RAB18ENSG00000099246.121642.898701077.479800.608502.486701.56210K562PABPN1
RAB18ENSG00000099246.12949.915201244.07930-0.389203.787503.02210K562PTBP1
RAB18ENSG00000099246.122458.055801771.604100.472405.459404.31470K562PUF60
RAB18ENSG00000099246.122333.351601884.615000.308002.586101.55480K562PUM1
RAB18ENSG00000099246.123440.718701367.860901.3307034.7015032.73090K562PUS1
RAB18ENSG00000099246.121759.719401118.076800.654204.127702.33100K562RAVER1
RAB18ENSG00000099246.122464.728601332.901500.8868024.6316022.78680K562RBM15
RAB18ENSG00000099246.12830.185601193.15840-0.523305.286604.08070K562RBM22
RAB18ENSG00000099246.121421.771601111.392200.355203.208201.76930K562RBM25
RAB18ENSG00000099246.12856.527201189.70220-0.474004.174002.01590K562RECQL
RAB18ENSG00000099246.12661.57140968.15280-0.549303.032601.97880K562RPS3
RAB18ENSG00000099246.122132.23210985.225901.113706.027804.04480K562SF1
RAB18ENSG00000099246.121197.05010987.942600.276902.657501.85810K562SF3A3
RAB18ENSG00000099246.122087.990401131.715700.883503.841902.30320K562SNRNP200
RAB18ENSG00000099246.12618.64060934.82880-0.595603.480202.28100K562SRSF4
RAB18ENSG00000099246.122441.946301353.541200.851203.307701.70360K562SUPT6H
RAB18ENSG00000099246.12841.62610623.503300.432702.788201.76800K562SUPV3L1
RAB18ENSG00000099246.12491.01330656.88150-0.419902.431401.55740K562TIAL1
RAB18ENSG00000099246.121246.712201009.652600.304203.346301.93940K562TROVE2
RAB18ENSG00000099246.121620.695601173.061500.466205.930904.75670K562U2AF2
RAB18ENSG00000099246.12878.90900659.889300.413402.870601.82970K562UCHL5
RAB18ENSG00000099246.12902.106701061.64070-0.234901.984301.36890K562UPF1
RAB18ENSG00000099246.122321.329901387.023600.742902.894501.56550K562UTP18
RAB18ENSG00000099246.121145.58960944.627500.278202.944402.07150K562WDR43
RAB18ENSG00000099246.122356.230901892.324600.316203.027901.67250K562WRN
RAB18ENSG00000099246.122365.874301331.672600.829004.045801.95350K562YTHDC2
RAB18ENSG00000099246.122159.423601798.678600.263602.095701.35470K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB18 is not available on ENCORE database.





13 RBPs can affect the splicing of RAB18 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB18ENSG00000099246.12chr10+278228562782292327822663278227822782680427827069-0.120000.002790.07900excludedK562PRPF8
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.108000.000090.02839includedK562PCBP1
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.076000.000000.00000includedHepG2U2AF2
SERAB18ENSG00000099246.12chr10+278228562782292327822663278227822782680427828203-0.169000.000000.00000excludedK562AQR
SERAB18ENSG00000099246.12chr10+278157292781581827798771277988592782143527821508-0.058000.003370.03366excludedK562AQR
SERAB18ENSG00000099246.12chr10+278226632782278227815756278158182782285627822923-0.102000.005950.07101excludedK562PUS1
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.084000.000700.01681includedK562U2AF1
SERAB18ENSG00000099246.12chr10+278228562782292327822663278227822782680427827069-0.089000.000000.00004excludedHepG2SF3A3
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.079000.000460.03833includedK562HNRNPUL1
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.184000.000000.00000includedK562U2AF2
SERAB18ENSG00000099246.12chr10+2782045727820544278157562781581827821435278215080.053000.000060.00681includedHepG2SRSF9
MXERAB18ENSG00000099246.12chr10+2781575627815818278226632782278227798803277988592782285627822923-0.177000.003730.083142includedK562UCHL5
MXERAB18ENSG00000099246.12chr10+27815756278158182782143527821508277988032779885927822663278227820.093000.009820.086271includedK562DROSHA
MXERAB18ENSG00000099246.12chr10+27798771277988592782266327822782277932562779336627822856278229230.061000.000120.001441includedK562AQR
MXERAB18ENSG00000099246.12chr10+27821435278215082782266327822782277988032779885927822856278229230.070000.000110.001281includedK562AQR
MXERAB18ENSG00000099246.12chr10+27798803277988592782266327822782277932562779336627822856278229230.118000.002240.018361includedK562AQR
MXERAB18ENSG00000099246.12chr10+2782285627822923278268042782689127822663278227822783093027831143-0.167000.000000.000002includedK562AQR
MXERAB18ENSG00000099246.12chr10+2781575627815818278226632782278227798803277988592782285627822923-0.113000.006330.056502includedHepG2SFPQ
MXERAB18ENSG00000099246.12chr10+2779880327798859278157562781581827793196277933662782143527821508-0.192000.002270.059572includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB18 is not avaliable on ENCORE database.