PRIM1

General Information

Gene Name       : PRIM1
Gene ID             : ENSG00000198056.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PRIM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRIM1ENSG00000198056.1345.1240.6742.89ENCSR000AEF
HepG2PRIM1ENSG00000198056.1322.6636.8129.73ENCSR985KAT
K562PRIM1ENSG00000198056.13106.58102.44104.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRIM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRIM1 RNA is bound by 13 proteins.  







eCLIP assay for PRIM1 is not avaliable on ENCORE database.





13 proteins are bound to PRIM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125712543557125502-3'-UTR,intron-Distal,intron-Proximal3.789118.04012K562ZNF622
chr125713554357135561-3'-UTR,CDS,intron-Distal4.080343.02457HepG2BCLAF1
chr125713553057135614-3'-UTR,CDS,intron-Distal,intron-Proximal3.467247.44661K562YBX3
chr125712794057127978-3'-UTR,CDS,intron-Distal3.450113.68471HepG2BCLAF1
chr125713786457137908-5'-UTR,CDS,intron-Distal,intron-Proximal3.370765.77496K562DDX24
chr125713983957139951-5'-UTR,CDS,intron-Distal,intron-Proximal3.558664.88141HepG2GRWD1
chr125713983257139882-5'-UTR,CDS,intron-Distal,intron-Proximal3.419603.05161HepG2PPIG
chr125714602657146118-5'-UTR,CDS,intron-Distal,intron-Proximal3.451106.03665K562DDX3X
chr125713978857139841-5'-UTR,CDS,intron-Distal,intron-Proximal3.045396.53539K562PRPF8
chr125714074257140816-CDS,intron-Distal3.039463.68571K562IGF2BP1
chr125714071157140755-CDS,intron-Distal,intron-Proximal8.1954394.93489K562LIN28B
chr125714076057140816-CDS,intron-Distal3.819343.27203K562IGF2BP2
chr125713988257139939-CDS,intron-Distal,intron-Proximal3.647444.52024HepG2PPIG
chr125713988857139953-CDS,intron-Distal,intron-Proximal4.1730311.92429K562LIN28B
chr125714070957140753-CDS,intron-Distal,intron-Proximal5.115975.78061HepG2LIN28B
chr125714072257140776-CDS,intron-Distal,intron-Proximal3.272905.23038K562ZNF622
chr125714066157140720-CDS,intron-Distal,intron-Proximal4.0745512.44852K562PRPF8
chr125714058057140638-CDS,intron-Distal,intron-Proximal8.39676110.05927K562LIN28B
chr125714070857140711-CDS,intron-Distal,intron-Proximal8.0713086.64317K562LIN28B
chr125713988357139948-CDS,intron-Distal,intron-Proximal3.170814.61143K562UCHL5
chr125714060457140639-CDS,intron-Distal,intron-Proximal5.196115.48503HepG2LIN28B
chr125714066357140733-CDS,intron-Distal,intron-Proximal4.8499910.85246HepG2PRPF8
chr125714038557140422-intron-Distal4.184883.31283K562PRPF8
chr125713975557139788-intron-Distal,intron-Proximal4.356863.49003K562PRPF8
chr125712531657125360-5'-UTR,intron-Distal,intron-Proximal3.947415.48330K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRIM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRIM1 is not available on ENCORE database.

  • 123 RBPs can affect the levels of PRIM1.  








The Knockdown/knockout RNA-Seq assay for PRIM1 is not available on ENCORE database.





123 RBPs can affect the gene expression of PRIM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRIM1ENSG00000198056.9197.44420501.29170-1.3442023.4763022.09680HepG2ACO1
PRIM1ENSG00000198056.9239.99180591.42210-1.3012011.6766010.65740HepG2AKAP1
PRIM1ENSG00000198056.9138.86870244.69630-0.817304.223602.94570HepG2AKAP8
PRIM1ENSG00000198056.9295.46080503.70570-0.769608.944207.66450HepG2AKAP8L
PRIM1ENSG00000198056.9193.99060489.37510-1.3350011.413109.90080HepG2ASCC1
PRIM1ENSG00000198056.9465.20990763.69480-0.7151010.315009.12870HepG2AUH
PRIM1ENSG00000198056.9241.76900402.08590-0.733903.674502.59580HepG2BCCIP
PRIM1ENSG00000198056.9197.30010349.42350-0.824604.728503.58100HepG2BCLAF1
PRIM1ENSG00000198056.9125.13200374.99500-1.5834014.8953013.66040HepG2BOP1
PRIM1ENSG00000198056.9273.68710539.61880-0.9794011.4083010.01370HepG2CALR
PRIM1ENSG00000198056.9252.06740501.25350-0.9917014.6856013.40650HepG2CKAP4
PRIM1ENSG00000198056.9117.72780230.24290-0.967704.288403.33050HepG2CNOT7
PRIM1ENSG00000198056.9202.41290344.27440-0.766304.735703.85670HepG2CPSF6
PRIM1ENSG00000198056.9446.35510672.35400-0.591006.630005.71720HepG2CELF1
PRIM1ENSG00000198056.9514.73300722.98650-0.490106.112105.07120HepG2DAZAP1
PRIM1ENSG00000198056.9301.92260468.21700-0.633004.780703.91630HepG2DDX21
PRIM1ENSG00000198056.9277.23590566.58690-1.031207.520006.53380HepG2DDX3X
PRIM1ENSG00000198056.9170.19350395.31200-1.215808.812307.51750HepG2DDX55
PRIM1ENSG00000198056.9248.11440390.94600-0.656002.430601.51380HepG2DDX59
PRIM1ENSG00000198056.9123.19870486.59390-1.9817021.3861019.88350HepG2DDX6
PRIM1ENSG00000198056.9256.11050365.67200-0.513803.476002.69420HepG2DNAJC21
PRIM1ENSG00000198056.9253.08200362.38400-0.517904.058303.29950HepG2DNAJC2
PRIM1ENSG00000198056.9280.79540450.27090-0.681304.382803.24830HepG2EEF2
PRIM1ENSG00000198056.9268.34890431.07140-0.683804.002202.65530HepG2AGO1
PRIM1ENSG00000198056.9267.59600467.88960-0.806105.910905.06150HepG2EIF2S1
PRIM1ENSG00000198056.9180.41250365.51510-1.018607.086105.70020HepG2EIF3D
PRIM1ENSG00000198056.9241.57970517.12860-1.098008.546507.42540HepG2EIF4A3
PRIM1ENSG00000198056.9289.49790503.39110-0.798104.742003.85640HepG2EIF4B
PRIM1ENSG00000198056.9398.88870683.24010-0.776407.823906.48350HepG2EIF4G2
PRIM1ENSG00000198056.9556.63600411.251400.436602.738501.65150HepG2ESF1
PRIM1ENSG00000198056.9508.57580876.84670-0.7859012.4416011.31590HepG2ETF1
PRIM1ENSG00000198056.9292.54830489.91430-0.743906.783905.47890HepG2EWSR1
PRIM1ENSG00000198056.9328.98360479.32690-0.543002.779302.00670HepG2FIP1L1
PRIM1ENSG00000198056.9207.35080344.84680-0.733902.218001.31680HepG2FTO
PRIM1ENSG00000198056.9258.88190483.94230-0.902506.829605.80350HepG2G3BP1
PRIM1ENSG00000198056.9716.65250513.651100.480403.272102.29930HepG2G3BP2
PRIM1ENSG00000198056.9228.11890325.44270-0.512602.526301.67500HepG2GEMIN5
PRIM1ENSG00000198056.9280.30790511.25440-0.867007.090105.44890HepG2GNB2L1
PRIM1ENSG00000198056.9277.43990390.28510-0.492402.283701.69930HepG2GPKOW
PRIM1ENSG00000198056.9357.27070478.63290-0.421903.347102.27890HepG2HDGF
PRIM1ENSG00000198056.9267.67510369.17460-0.463802.391501.78730HepG2HNRNPA1
PRIM1ENSG00000198056.9186.89930410.61890-1.1355010.456709.18260HepG2HNRNPC
PRIM1ENSG00000198056.9374.66780489.82870-0.386701.937101.34710HepG2HNRNPK
PRIM1ENSG00000198056.9457.40060658.59770-0.525906.394205.40980HepG2HNRNPL
PRIM1ENSG00000198056.9259.72390372.45410-0.520102.571601.96080HepG2HNRNPLL
PRIM1ENSG00000198056.9132.37230491.94830-1.8939017.7994016.26200HepG2IGF2BP2
PRIM1ENSG00000198056.9235.85460620.03820-1.3945014.9962013.10190HepG2LARP4
PRIM1ENSG00000198056.9196.08780382.54140-0.964104.602103.26560HepG2METAP2
PRIM1ENSG00000198056.9259.70010537.10420-1.048409.115108.00440HepG2NCBP2
PRIM1ENSG00000198056.9219.48650362.88830-0.725402.768101.67470HepG2NONO
PRIM1ENSG00000198056.999.73410210.38500-1.076904.824003.62580HepG2PABPC1
PRIM1ENSG00000198056.9283.27260478.42860-0.756103.705502.87790HepG2PABPC4
PRIM1ENSG00000198056.9305.43490403.78120-0.402702.595801.77160HepG2PARN
PRIM1ENSG00000198056.9340.26860508.77920-0.580405.484304.67590HepG2PCBP1
PRIM1ENSG00000198056.9296.62380541.64120-0.868705.926704.45110HepG2PCBP2
PRIM1ENSG00000198056.9102.40720305.07070-1.5748012.6063011.05550HepG2PRPF8
PRIM1ENSG00000198056.9312.52720517.70540-0.728107.418306.60800HepG2PTBP1
PRIM1ENSG00000198056.9331.95820684.34170-1.0437013.9519012.75450HepG2PUF60
PRIM1ENSG00000198056.9474.63080726.44560-0.614009.098308.15460HepG2PUM1
PRIM1ENSG00000198056.9474.77330725.92330-0.612606.471905.46140HepG2PUM2
PRIM1ENSG00000198056.9326.79190560.68020-0.778808.201407.21400HepG2QKI
PRIM1ENSG00000198056.9327.77880522.67710-0.673202.993002.26180HepG2RAVER1
PRIM1ENSG00000198056.9441.16180583.77530-0.404102.956402.07240HepG2RBM15
PRIM1ENSG00000198056.9138.26260732.87680-2.4062062.6265060.80640HepG2RBM22
PRIM1ENSG00000198056.9253.31190508.85620-1.0063011.126909.83370HepG2RBM25
PRIM1ENSG00000198056.9343.74380603.82010-0.812806.427504.90730HepG2RBM27
PRIM1ENSG00000198056.9730.64590536.614000.445202.431801.84920HepG2RECQL
PRIM1ENSG00000198056.9155.96710428.46520-1.4579016.8990015.49190HepG2RPLP0
PRIM1ENSG00000198056.9223.78930513.46330-1.198109.554807.90670HepG2RPS10
PRIM1ENSG00000198056.982.38730355.66810-2.1100027.9788026.36170HepG2RPS19
PRIM1ENSG00000198056.9229.25500556.91720-1.2805014.5581012.82240HepG2RPS2
PRIM1ENSG00000198056.965.86330301.78980-2.1960019.9917018.24210HepG2RRP9
PRIM1ENSG00000198056.9181.48150356.95920-0.975907.331405.82110HepG2SERBP1
PRIM1ENSG00000198056.9266.52620499.20310-0.905306.759505.67330HepG2SF3A3
PRIM1ENSG00000198056.9274.18260368.66940-0.427202.030901.42120HepG2SF3B1
PRIM1ENSG00000198056.9184.26960538.99180-1.5484026.5345025.02290HepG2SF3B4
PRIM1ENSG00000198056.9336.37000423.65300-0.332802.077801.50850HepG2SMN1
PRIM1ENSG00000198056.9295.04450533.03560-0.853306.219104.73790HepG2SMNDC1
PRIM1ENSG00000198056.9262.34490827.74890-1.6577044.8906043.51020HepG2SRFBP1
PRIM1ENSG00000198056.9393.88570562.59330-0.514304.591404.02060HepG2SRSF1
PRIM1ENSG00000198056.9355.21270675.67180-0.9276014.6423013.36410HepG2SRSF5
PRIM1ENSG00000198056.9195.74040390.80790-0.9975010.538309.33070HepG2SRSF7
PRIM1ENSG00000198056.9250.70300457.70190-0.8684010.364009.41450HepG2SRSF9
PRIM1ENSG00000198056.9560.00320768.43860-0.456505.211204.40380HepG2SUCLG1
PRIM1ENSG00000198056.9103.26360393.56160-1.9303018.8165017.32440HepG2SUPV3L1
PRIM1ENSG00000198056.9151.20930362.96580-1.2633011.257209.94500HepG2TARDBP
PRIM1ENSG00000198056.9140.67770263.81170-0.907104.993603.71200HepG2TFIP11
PRIM1ENSG00000198056.9202.91270396.42990-0.966209.680808.84450HepG2TIAL1
PRIM1ENSG00000198056.9228.95500399.89490-0.804605.138904.41850HepG2TRIM56
PRIM1ENSG00000198056.9500.99280668.55110-0.416203.040102.12010HepG2TUFM
PRIM1ENSG00000198056.9199.68920410.08450-1.038208.035806.96610HepG2U2AF1
PRIM1ENSG00000198056.9125.55290407.49010-1.698505.796804.31920HepG2U2AF2
PRIM1ENSG00000198056.9195.29120442.71490-1.1808016.4835015.05910HepG2UPF1
PRIM1ENSG00000198056.9332.36640455.06330-0.453303.374702.23070HepG2UTP18
PRIM1ENSG00000198056.9320.96190427.42670-0.413302.797102.19740HepG2UTP3
PRIM1ENSG00000198056.9338.44530574.82530-0.764205.050003.64680HepG2XRCC6
PRIM1ENSG00000198056.9152.68290486.90430-1.6731033.3131031.95680HepG2ZNF622
PRIM1ENSG00000198056.92088.607402445.89990-0.227802.881202.30320K562AGGF1
PRIM1ENSG00000198056.92214.137402687.52530-0.279502.399001.49350K562AKAP8
PRIM1ENSG00000198056.91831.508302545.03310-0.474705.718404.75900K562AKAP8L
PRIM1ENSG00000198056.91155.067602890.20740-1.3232032.6910030.87660K562AQR
PRIM1ENSG00000198056.9564.66960746.18150-0.402102.761601.71000K562CCAR1
PRIM1ENSG00000198056.9841.105701335.29480-0.666809.537807.48640K562DDX3X
PRIM1ENSG00000198056.92213.167902599.78410-0.232302.681102.03830K562DDX47
PRIM1ENSG00000198056.91048.391101353.80110-0.368804.238702.51580K562DDX6
PRIM1ENSG00000198056.92364.170502738.86760-0.212202.352001.55360K562DKC1
PRIM1ENSG00000198056.9917.194401404.54700-0.614806.547005.09580K562EFTUD2
PRIM1ENSG00000198056.91016.604701503.95070-0.565004.573203.20260K562EIF3D
PRIM1ENSG00000198056.91477.275201760.90550-0.253402.227801.50760K562EIF3G
PRIM1ENSG00000198056.91067.803201395.03550-0.385703.435802.52540K562EIF4A3
PRIM1ENSG00000198056.92966.396503478.73640-0.229902.516701.61740K562EIF4G2
PRIM1ENSG00000198056.91217.104101532.16100-0.332102.413701.61270K562FMR1
PRIM1ENSG00000198056.9966.586001298.60560-0.426003.324502.31500K562FTO
PRIM1ENSG00000198056.91103.739501450.77510-0.394405.030804.24950K562FXR1
PRIM1ENSG00000198056.92402.024401732.133200.471603.301602.51590K562G3BP2
PRIM1ENSG00000198056.9996.579101437.83230-0.528805.869204.71670K562GPKOW
PRIM1ENSG00000198056.92113.679802702.60240-0.354603.761502.88440K562GRSF1
PRIM1ENSG00000198056.9891.720601529.87150-0.7787012.3999011.21220K562HNRNPC
PRIM1ENSG00000198056.9940.060601366.04640-0.539206.032204.26240K562HNRNPF
PRIM1ENSG00000198056.92583.988502025.713000.351103.154502.20300K562HNRNPU
PRIM1ENSG00000198056.91362.403401964.60410-0.528104.424103.00020K562IGF2BP2
PRIM1ENSG00000198056.91550.287301998.29360-0.366203.417802.05490K562IGF2BP3
PRIM1ENSG00000198056.92177.550602701.04460-0.310803.155902.27080K562KIF1C
PRIM1ENSG00000198056.9890.690401227.63210-0.462902.866401.91310K562KRR1
PRIM1ENSG00000198056.91669.989202064.78400-0.306202.825201.97570K562MAGOH
PRIM1ENSG00000198056.91137.177201403.46910-0.303502.411501.59730K562METAP2
PRIM1ENSG00000198056.91824.671302056.09230-0.172302.190901.51970K562NSUN2
PRIM1ENSG00000198056.91381.254601837.15780-0.411504.217303.00340K562PCBP2
PRIM1ENSG00000198056.92054.093401620.870200.341602.345001.57940K562PCBP3
PRIM1ENSG00000198056.91563.909601243.268700.330902.266201.54080K562POLR2G
PRIM1ENSG00000198056.9936.485501366.78320-0.545505.155104.13130K562PRPF8
PRIM1ENSG00000198056.91029.714801371.65370-0.413703.589502.54030K562PSIP1
PRIM1ENSG00000198056.91615.944402006.06230-0.312003.011702.32210K562PTBP1
PRIM1ENSG00000198056.92063.419902524.23670-0.290802.248601.74900K562PUS1
PRIM1ENSG00000198056.91995.725502459.27110-0.301303.629402.96350K562RBM15
PRIM1ENSG00000198056.91391.140301923.60820-0.467504.979503.81290K562RBM22
PRIM1ENSG00000198056.9850.704601392.29970-0.710706.780005.48940K562RPS19
PRIM1ENSG00000198056.9986.186301345.84230-0.448603.528602.38550K562RPS3
PRIM1ENSG00000198056.9953.653801801.69780-0.9178020.5710018.05660K562SF3B4
PRIM1ENSG00000198056.9847.670901186.19910-0.484804.430303.04680K562SRFBP1
PRIM1ENSG00000198056.91743.842902078.53040-0.253303.573202.52570K562SRPK2
PRIM1ENSG00000198056.91222.619701966.60290-0.6857011.6628010.21890K562SRSF1
PRIM1ENSG00000198056.91029.090501299.22480-0.336302.757701.70870K562SRSF4
PRIM1ENSG00000198056.92269.320501816.345400.321103.323201.89910K562SSB
PRIM1ENSG00000198056.91490.894401990.34550-0.416803.781302.94830K562TARDBP
PRIM1ENSG00000198056.91591.752701919.90900-0.270402.357701.60920K562TIA1
PRIM1ENSG00000198056.9969.761101401.41420-0.531205.672504.20210K562TRIM56
PRIM1ENSG00000198056.91484.533802180.11540-0.5544013.1271011.70170K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRIM1 is not available on ENCORE database.





6 RBPs can affect the splicing of PRIM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRIM1ENSG00000198056.9chr12-571448215714497957140739571408165714597957146053-0.188000.000020.00081excludedHepG2SRSF1
SEPRIM1ENSG00000198056.9chr12-571355295713559657135218571353605713784857137907-0.490000.000010.00089excludedHepG2SF3B4
SEPRIM1ENSG00000198056.9chr12-571448215714497957140739571408165714597957146053-0.067000.000000.00018excludedK562HNRNPK
RIPRIM1ENSG00000198056.9chr12-5714056457140816571405645714063857140709571408160.133000.002040.01647includedHepG2U2AF2
RIPRIM1ENSG00000198056.9chr12-5714056457140816571405645714063857140709571408160.054000.000100.00081includedK562AQR
MXEPRIM1ENSG00000198056.9chr12-57140709571408165714482157144979571405645714063857145979571461190.151000.002410.079151includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRIM1 is not avaliable on ENCORE database.