PDXP

General Information

Gene Name       : PDXP
Gene ID             : ENSG00000241360.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDXP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDXPENSG00000241360.119.0227.2023.11ENCSR000AEF
HepG2PDXPENSG00000241360.145.2641.2343.24ENCSR985KAT
K562PDXPENSG00000241360.145.0236.4840.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDXP is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDXP RNA is bound by 21 proteins.  







eCLIP assay for PDXP is not avaliable on ENCORE database.





21 proteins are bound to PDXP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223806212738062192+3'-UTR5.6403027.63263HepG2PCBP2
chr223806275138062798+3'-UTR3.490494.36276HepG2LARP4
chr223806257138062627+3'-UTR3.628763.73678HepG2UPF1
chr223806211838062187+3'-UTR3.828803.17235HepG2HNRNPK
chr223806210138062191+3'-UTR5.3914910.94465HepG2UPF1
chr223806283138062918+3'-UTR6.5969227.26004K562PABPC4
chr223806220038062276+3'-UTR4.358004.85526K562PCBP1
chr223806246938062571+3'-UTR4.0025710.09137HepG2UPF1
chr223806283038062857+3'-UTR3.463124.25556HepG2TIAL1
chr223806217038062275+3'-UTR3.220343.72310K562HNRNPK
chr223806283938062904+3'-UTR3.588706.68363K562TIA1
chr223806283138062897+3'-UTR4.306464.51679K562DDX6
chr223806257938062625+3'-UTR5.199438.41097K562UPF1
chr223806220638062285+3'-UTR4.0267111.29390HepG2AKAP1
chr223806219238062278+3'-UTR4.1673317.16113HepG2PCBP2
chr223806230438062381+3'-UTR3.779769.00887K562UPF1
chr223806198838062011+3'-UTR4.716465.81610HepG2DDX3X
chr223806283038062897+3'-UTR3.284784.39043HepG2AKAP1
chr223806278538062831+3'-UTR5.3144313.04183K562PABPC4
chr223806282438062899+3'-UTR3.9520115.56300HepG2DDX55
chr223806267638062753+3'-UTR4.672055.45170HepG2AKAP1
chr223806248338062619+3'-UTR4.089907.46349HepG2AKAP1
chr223806212338062200+3'-UTR3.352546.48920K562UPF1
chr223806219138062283+3'-UTR3.6253312.43817HepG2UPF1
chr223806250638062561+3'-UTR4.362247.50817K562UPF1
chr223806283438062898+3'-UTR4.362247.50817K562UPF1
chr223806238838062467+3'-UTR4.049189.37242K562UPF1
chr223806256138062613+3'-UTR3.180534.11795K562YBX3
chr223806266938062738+3'-UTR3.002543.35239HepG2IGF2BP1
chr223805475638054866+5'-UTR,CDS,intron-Distal6.59391400.00000HepG2DDX3X
chr223806155138061585+3'-UTR,5'-UTR,CDS,intron-Proximal4.3918613.64756HepG2AQR
chr223806150738061576+3'-UTR,5'-UTR,CDS,intron-Proximal3.814043.84691HepG2SF3B4
chr223805477338054928+5'-UTR,CDS,intron-Distal4.680595.93974HepG2UPF1
chr223805476238054901+5'-UTR,CDS,intron-Distal4.346928.45138K562DDX3X
chr223805484338054936+CDS,intron-Distal3.087534.64546HepG2DHX30
chr223806169338061773+3'-UTR,CDS3.414784.88774HepG2RBM15
chr223805511138055163+CDS,intron-Distal4.4575419.27291HepG2DDX3X
chr223805523138055255+CDS,intron-Distal3.287083.62497HepG2DHX30
chr223805486638054951+CDS,intron-Distal6.1303769.10355HepG2DDX3X
chr223805535938055400+CDS,intron-Distal,intron-Proximal3.150994.23709HepG2AQR
chr223806168838061762+3'-UTR,CDS3.975153.48187K562RBM15
chr223805480638054949+CDS,intron-Distal3.100484.74029K562FTO
chr223805543438055548+intron-Distal,intron-Proximal3.387284.59965HepG2PRPF4
chr223805734438057456+intron-Distal3.794273.08314K562TARDBP
chr223806149938061551+intron-Proximal4.8042125.65652HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDXP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDXP is not available on ENCORE database.

  • 111 RBPs can affect the levels of PDXP.  








The Knockdown/knockout RNA-Seq assay for PDXP is not available on ENCORE database.





111 RBPs can affect the gene expression of PDXP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDXPENSG00000241360.1487.49730711.06310-0.544604.553303.21040HepG2AATF
PDXPENSG00000241360.1750.26440973.91550-0.376404.487203.74960HepG2ACO1
PDXPENSG00000241360.1415.727202018.55070-2.2796056.4957054.58670HepG2AKAP1
PDXPENSG00000241360.11140.598401670.14500-0.550205.289304.22070HepG2ASCC1
PDXPENSG00000241360.11273.340301041.973800.289203.140002.41510HepG2AUH
PDXPENSG00000241360.1852.75110577.563800.562003.737502.70600HepG2BCLAF1
PDXPENSG00000241360.1620.33720354.990800.805206.247205.38950HepG2BOP1
PDXPENSG00000241360.12105.479001586.764400.408003.471302.61150HepG2CIRBP
PDXPENSG00000241360.11227.27110973.639400.333904.430803.62700HepG2CKAP4
PDXPENSG00000241360.1548.18580901.71320-0.718004.457803.48350HepG2CNOT7
PDXPENSG00000241360.1145.57250325.88790-1.162608.791307.62640HepG2CPSF6
PDXPENSG00000241360.11005.36930648.724200.631909.224007.39580HepG2YBX3
PDXPENSG00000241360.11387.303601120.183000.308404.105203.23070HepG2DAZAP1
PDXPENSG00000241360.1590.45490784.71340-0.410303.064702.35320HepG2DDX21
PDXPENSG00000241360.11430.835201115.664800.358902.903501.58020HepG2DDX47
PDXPENSG00000241360.1354.13850653.60970-0.884107.928906.69940HepG2DDX55
PDXPENSG00000241360.1982.092401661.13510-0.758208.131607.12410HepG2DDX6
PDXPENSG00000241360.1817.48640614.370600.412003.140502.09880HepG2DHX30
PDXPENSG00000241360.11461.74210931.756500.6496012.8250011.58460HepG2DKC1
PDXPENSG00000241360.1826.89380631.384100.389104.591603.78790HepG2DNAJC2
PDXPENSG00000241360.1580.02590793.78190-0.452603.094502.12290HepG2EEF2
PDXPENSG00000241360.1226.62710661.64960-1.5457023.9891020.97010HepG2EFTUD2
PDXPENSG00000241360.1282.47130644.32190-1.1897013.4452011.62110HepG2EIF3D
PDXPENSG00000241360.1783.564101718.11890-1.1327013.2217011.78430HepG2EIF4B
PDXPENSG00000241360.1540.756801105.10880-1.0311023.9623022.01940HepG2EIF4G1
PDXPENSG00000241360.1542.40520747.71900-0.463103.842802.52750HepG2FASTKD2
PDXPENSG00000241360.1297.451601079.99280-1.8603013.2520011.75660HepG2FIP1L1
PDXPENSG00000241360.1448.14360821.78320-0.874806.974205.25880HepG2FUS
PDXPENSG00000241360.1986.526901780.53400-0.8519011.6439010.32250HepG2FXR1
PDXPENSG00000241360.1756.272401651.56620-1.1269017.3587015.76390HepG2G3BP1
PDXPENSG00000241360.1429.50610691.25650-0.686504.946003.57980HepG2GNB2L1
PDXPENSG00000241360.11072.21040369.383901.5373025.0175023.30290HepG2GPKOW
PDXPENSG00000241360.1582.89990834.80950-0.518202.821501.69940HepG2GRSF1
PDXPENSG00000241360.1855.84590643.078800.412303.168102.48330HepG2HNRNPA1
PDXPENSG00000241360.11087.95610625.642100.7981015.9513014.41700HepG2HNRNPF
PDXPENSG00000241360.1608.655801672.68770-1.4585032.8363030.71710HepG2HNRNPK
PDXPENSG00000241360.1868.64600352.513101.3010019.0413017.61210HepG2HNRNPLL
PDXPENSG00000241360.1482.45730744.86330-0.626604.140302.99710HepG2HNRNPM
PDXPENSG00000241360.1568.02760710.58710-0.323102.759002.15240HepG2HNRNPU
PDXPENSG00000241360.11312.56790616.077801.0911014.9599013.41980HepG2IGF2BP1
PDXPENSG00000241360.11287.873101678.73110-0.382402.836002.15390HepG2IGF2BP2
PDXPENSG00000241360.1707.961501575.61750-1.154205.502804.14010HepG2IGF2BP3
PDXPENSG00000241360.1891.978001688.60990-0.920809.895307.91210HepG2KHSRP
PDXPENSG00000241360.1536.65460890.24080-0.7302013.9746011.91450HepG2KIF1C
PDXPENSG00000241360.1455.50970677.25710-0.572203.331502.08690HepG2LARP7
PDXPENSG00000241360.1299.39770674.30410-1.171309.665807.82770HepG2METAP2
PDXPENSG00000241360.1546.74370873.62240-0.676104.726003.68910HepG2MSI2
PDXPENSG00000241360.1341.53070703.34590-1.0422018.4480016.62290HepG2PARN
PDXPENSG00000241360.1398.83640532.84760-0.417902.952301.67830HepG2PKM
PDXPENSG00000241360.1852.77630593.811500.522106.722205.57650HepG2PRPF4
PDXPENSG00000241360.11076.822601884.10910-0.8071021.7558020.50360HepG2PTBP1
PDXPENSG00000241360.1763.894601125.56910-0.5592010.424709.42870HepG2PUM1
PDXPENSG00000241360.1720.242801124.75180-0.643108.823207.65850HepG2PUM2
PDXPENSG00000241360.11631.20450991.986700.717405.893005.05450HepG2PUS1
PDXPENSG00000241360.1792.803501134.33600-0.516805.878704.68660HepG2RBM15
PDXPENSG00000241360.1698.32270999.91010-0.517906.384905.67570HepG2RBM22
PDXPENSG00000241360.1528.10660816.66730-0.628905.485904.07580HepG2RBM27
PDXPENSG00000241360.11064.775202096.90230-0.9777011.5736010.61360HepG2NELFE
PDXPENSG00000241360.1961.278801952.85300-1.0226033.7465032.04710HepG2RECQL
PDXPENSG00000241360.11293.90250673.984700.940809.863708.70850HepG2RPLP0
PDXPENSG00000241360.11149.01670737.568100.639504.150502.99830HepG2RPS10
PDXPENSG00000241360.1336.85650627.00700-0.8963010.039108.95600HepG2RPS19
PDXPENSG00000241360.1283.73430629.21470-1.1490014.0384012.01270HepG2SERBP1
PDXPENSG00000241360.1674.53060348.897900.9510010.622609.32370HepG2SF3B1
PDXPENSG00000241360.1911.780501961.75130-1.1054032.4174030.79030HepG2SF3B4
PDXPENSG00000241360.11250.703001016.666000.298803.613102.82870HepG2SLBP
PDXPENSG00000241360.1396.44590737.94420-0.8964016.9392015.55180HepG2SMN1
PDXPENSG00000241360.1572.43680245.338401.222202.695901.40780HepG2SNRNP200
PDXPENSG00000241360.1167.32540388.21740-1.214205.610804.48740HepG2SNRNP70
PDXPENSG00000241360.1783.853501129.35960-0.526808.000407.27030HepG2SRFBP1
PDXPENSG00000241360.11273.518602047.58220-0.6851015.7408014.81070HepG2SRSF1
PDXPENSG00000241360.1536.042601046.90260-0.9657021.1977019.68350HepG2SRSF5
PDXPENSG00000241360.11263.91200614.676101.0399027.6174025.86490HepG2SRSF7
PDXPENSG00000241360.1857.102001665.76430-0.9586027.6446026.24390HepG2SRSF9
PDXPENSG00000241360.11902.03210980.548000.9558032.0831030.77240HepG2SSB
PDXPENSG00000241360.1789.664901190.62470-0.5924011.058909.95590HepG2SUCLG1
PDXPENSG00000241360.11024.48810728.874200.491104.436203.25810HepG2SUPT6H
PDXPENSG00000241360.1396.85860650.61870-0.713205.536004.63070HepG2SUPV3L1
PDXPENSG00000241360.1744.163401840.27620-1.3062044.4811042.58330HepG2TAF15
PDXPENSG00000241360.1645.41700343.685100.909005.535204.56260HepG2TARDBP
PDXPENSG00000241360.11147.719201691.14410-0.559208.195506.76640HepG2TIA1
PDXPENSG00000241360.1712.363201069.90520-0.586808.908607.93360HepG2UTP3
PDXPENSG00000241360.1606.18400825.48790-0.445502.253701.30160HepG2XRCC6
PDXPENSG00000241360.1944.91340640.464000.561004.009003.14440HepG2XRN2
PDXPENSG00000241360.1789.30450586.001700.429604.996604.13880HepG2ZC3H8
PDXPENSG00000241360.11097.45840605.224300.8585017.9403016.61750K562AGGF1
PDXPENSG00000241360.1942.29720665.068300.502604.797703.41610K562AKAP8
PDXPENSG00000241360.11116.67560629.767800.8262011.7876010.31280K562AKAP8L
PDXPENSG00000241360.1379.74120539.96620-0.507902.961901.48760K562BUD13
PDXPENSG00000241360.1613.85010472.901700.376202.635401.61900K562DDX3X
PDXPENSG00000241360.11002.44590677.647100.564807.898806.28480K562DKC1
PDXPENSG00000241360.1300.92370441.38960-0.552703.587902.53920K562EFTUD2
PDXPENSG00000241360.1392.11350288.981800.440202.567701.80020K562EIF3G
PDXPENSG00000241360.1181.75460430.40710-1.243707.176604.00020K562EIF4G1
PDXPENSG00000241360.1561.65140431.271100.381002.794001.49790K562EWSR1
PDXPENSG00000241360.1319.20020511.73960-0.680904.643303.11460K562FKBP4
PDXPENSG00000241360.1744.00300513.809200.534005.815704.98610K562FXR1
PDXPENSG00000241360.1164.95280347.17020-1.073607.288706.02520K562G3BP2
PDXPENSG00000241360.1556.43090784.62970-0.495804.514603.14810K562HNRNPA1
PDXPENSG00000241360.1345.26500588.88570-0.770307.575706.63420K562HNRNPC
PDXPENSG00000241360.1612.19740458.390900.417302.323201.47440K562HNRNPM
PDXPENSG00000241360.1847.82580639.764600.406103.163401.99350K562MAK16
PDXPENSG00000241360.11229.26400748.695400.7152010.434608.46490K562MBNL1
PDXPENSG00000241360.1818.84780524.782600.641804.419803.22560K562NAA15
PDXPENSG00000241360.1737.30260396.819200.893704.134102.86100K562PABPN1
PDXPENSG00000241360.1537.42960411.434400.385302.296401.40980K562PCBP2
PDXPENSG00000241360.1880.992001110.18330-0.333603.117101.59480K562PNPT1
PDXPENSG00000241360.1853.93640632.652900.432603.343502.42610K562PPIG
PDXPENSG00000241360.1397.25640528.03570-0.410602.643501.76340K562PSIP1
PDXPENSG00000241360.1658.02430449.350500.550203.844703.07330K562PTBP1
PDXPENSG00000241360.1926.348801178.79150-0.347702.934402.09350K562PUF60
PDXPENSG00000241360.11468.70410624.524801.2336023.8452022.26300K562PUS1
PDXPENSG00000241360.11044.17850608.531900.7789012.8887011.60880K562RBM15
PDXPENSG00000241360.1628.11160439.086100.516402.614601.32610K562RRP9
PDXPENSG00000241360.1670.67030362.800700.886303.127201.82490K562SF1
PDXPENSG00000241360.1636.75970793.30740-0.317102.724101.91490K562SF3A3
PDXPENSG00000241360.1639.35920440.548400.537204.524903.62420K562SRSF1
PDXPENSG00000241360.1230.55960347.38230-0.591404.074203.10000K562U2AF2
PDXPENSG00000241360.1321.07270440.07210-0.454802.592101.61090K562UCHL5
PDXPENSG00000241360.1603.27600852.44560-0.498805.143804.19550K562UPF1
PDXPENSG00000241360.1625.03660758.50980-0.279202.376501.58760K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDXP is not available on ENCORE database.






No RBPs affect the alternative splcing events of PDXP on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PDXP is not avaliable on ENCORE database.